Wall clock time and date at job start Tue Mar 31 2020 13:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86803 * 119.99610 * 2 1 4 4 H 1.48494 * 109.47248 * 274.97197 * 3 2 1 5 5 H 1.48500 * 109.47261 * 34.97680 * 3 2 1 6 6 H 1.48506 * 109.46671 * 154.97787 * 3 2 1 7 7 C 1.38989 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.04394 * 7 2 1 9 9 N 1.37314 * 119.99795 * 354.31613 * 7 2 1 10 10 C 1.36492 * 126.06908 * 185.48980 * 9 7 2 11 11 C 1.35695 * 107.50744 * 180.02562 * 10 9 7 12 12 N 1.40539 * 126.08146 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99502 * 180.02562 * 12 11 10 14 14 O 1.21602 * 120.00396 * 359.97438 * 13 12 11 15 15 C 1.47679 * 119.99764 * 180.02562 * 13 12 11 16 16 C 1.41565 * 126.43852 * 179.71271 * 15 13 12 17 17 C 1.35333 * 105.55845 * 179.87192 * 16 15 13 18 18 N 1.35910 * 107.11273 * 0.37841 * 17 16 15 19 19 C 1.39910 * 124.96213 * 179.74567 * 18 17 16 20 20 C 1.39326 * 120.85658 * 359.70106 * 19 18 17 21 21 C 1.38016 * 119.07844 * 179.70312 * 20 19 18 22 22 N 1.31933 * 120.83151 * 0.58218 * 21 20 19 23 23 C 1.31928 * 121.88561 * 359.71027 * 22 21 20 24 24 C 1.38014 * 120.83529 * 359.97438 * 23 22 21 25 25 N 1.28484 * 110.07562 * 359.74829 * 18 17 16 26 26 C 1.40657 * 107.83096 * 359.97438 * 11 10 9 27 27 N 1.30908 * 108.38791 * 359.72070 * 26 11 10 28 28 H 0.96997 * 120.00151 * 0.02562 * 1 2 3 29 29 H 1.08000 * 126.24516 * 359.96122 * 10 9 7 30 30 H 0.97000 * 120.00013 * 359.97438 * 12 11 10 31 31 H 1.08002 * 127.22103 * 0.02562 * 16 15 13 32 32 H 1.08003 * 126.44208 * 180.10170 * 17 16 15 33 33 H 1.08005 * 120.45953 * 359.97438 * 20 19 18 34 34 H 1.07998 * 119.57835 * 180.29192 * 21 20 19 35 35 H 1.08001 * 119.57847 * 180.02562 * 23 22 21 36 36 H 1.07999 * 120.45922 * 180.02562 * 24 23 22 37 37 H 1.07997 * 125.80616 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3892 2.1072 -1.3947 5 1 1.5008 2.6201 0.8026 6 1 3.5931 1.4121 0.5922 7 6 2.0079 -1.2037 0.0005 8 1 3.0836 -1.2061 -0.0965 9 7 1.3264 -2.3899 0.1188 10 6 1.8854 -3.6293 0.2390 11 6 0.8720 -4.5271 0.3293 12 7 1.0091 -5.9191 0.4659 13 6 -0.0868 -6.6996 0.5443 14 8 -1.1942 -6.1995 0.4974 15 6 0.0573 -8.1623 0.6884 16 6 -0.9941 -9.1050 0.7885 17 6 -0.3907 -10.3111 0.9013 18 7 0.9503 -10.0912 0.8780 19 6 1.9279 -11.0873 0.9754 20 6 1.5716 -12.4270 1.1146 21 6 2.5661 -13.3801 1.2012 22 7 3.8388 -13.0344 1.1651 23 6 4.2161 -11.7764 1.0402 24 6 3.2828 -10.7645 0.9412 25 7 1.1890 -8.8349 0.7535 26 6 -0.3401 -3.8166 0.2631 27 7 -0.0657 -2.5421 0.1440 28 1 -0.4850 0.8400 -0.0004 29 1 2.9415 -3.8544 0.2576 30 1 1.8925 -6.3181 0.5029 31 1 -2.0552 -8.9040 0.7749 32 1 -0.8824 -11.2680 0.9969 33 1 0.5316 -12.7162 1.1498 34 1 2.2990 -14.4214 1.3044 35 1 5.2685 -11.5355 1.0144 36 1 3.5983 -9.7368 0.8387 37 1 -1.3289 -4.2484 0.3083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116800515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:49 Heat of formation + Delta-G solvation = 158.357538 kcal Electronic energy + Delta-G solvation = -24903.618170 eV Core-core repulsion = 21070.600140 eV Total energy + Delta-G solvation = -3833.018030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.108 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.07585 -41.72014 -41.03038 -40.03801 -36.00465 -35.52458 -34.97980 -32.74990 -32.30820 -31.71095 -31.44288 -29.62861 -27.14434 -25.87977 -24.95222 -23.64995 -22.83720 -22.30149 -21.54353 -21.07273 -19.76612 -19.32655 -18.25672 -17.42908 -17.40066 -17.11555 -16.99510 -16.77813 -16.10816 -16.04014 -15.73700 -15.23521 -15.11535 -14.90835 -14.74756 -14.74296 -14.66669 -14.06376 -13.49907 -13.34755 -12.94554 -12.85802 -12.82446 -12.11438 -12.07854 -11.98596 -11.82451 -11.12315 -11.04261 -10.83628 -10.68421 -10.43031 -10.28870 -10.12261 -9.82259 -8.57320 -8.48543 -6.25393 -0.51849 0.03092 0.57333 1.12570 1.20125 1.30227 1.40042 1.58457 1.73394 2.00332 2.09180 2.24434 2.61004 2.74879 2.83814 3.07265 3.10777 3.49096 3.58990 3.70933 3.85322 4.03416 4.07260 4.40845 4.45392 4.47276 4.55129 4.62746 4.66909 4.79031 4.91442 4.99124 5.04204 5.21501 5.26866 5.38022 5.47519 5.79062 5.93918 6.26781 6.49191 6.69864 6.75520 6.88829 7.22820 7.43716 7.64584 8.51266 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.002260 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.626070 B =12383.689860 C =13465.733732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C -0.007 4.007 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.244 1.244 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.165 5.165 10 C -0.078 4.078 11 C -0.049 4.049 12 N -0.602 5.602 13 C 0.584 3.416 14 O -0.560 6.560 15 C -0.009 4.009 16 C -0.183 4.183 17 C 0.009 3.991 18 N -0.242 5.242 19 C 0.160 3.840 20 C -0.172 4.172 21 C 0.124 3.876 22 N -0.509 5.509 23 C 0.121 3.879 24 C -0.179 4.179 25 N -0.273 5.273 26 C -0.055 4.055 27 N -0.308 5.308 28 H 0.277 0.723 29 H 0.187 0.813 30 H 0.418 0.582 31 H 0.179 0.821 32 H 0.240 0.760 33 H 0.181 0.819 34 H 0.201 0.799 35 H 0.187 0.813 36 H 0.147 0.853 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.616 -26.646 2.685 27.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.167 1.167 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.066 4.934 10 C -0.229 4.229 11 C -0.155 4.155 12 N -0.245 5.245 13 C 0.370 3.630 14 O -0.437 6.437 15 C -0.170 4.170 16 C -0.210 4.210 17 C -0.129 4.129 18 N -0.024 5.024 19 C 0.062 3.938 20 C -0.194 4.194 21 C -0.033 4.033 22 N -0.219 5.219 23 C -0.035 4.035 24 C -0.200 4.200 25 N -0.107 5.107 26 C -0.230 4.230 27 N -0.140 5.140 28 H 0.087 0.913 29 H 0.204 0.796 30 H 0.255 0.745 31 H 0.196 0.804 32 H 0.256 0.744 33 H 0.198 0.802 34 H 0.218 0.782 35 H 0.204 0.796 36 H 0.164 0.836 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.000 -25.533 2.594 26.602 hybrid contribution -0.811 0.683 -0.053 1.062 sum 6.189 -24.850 2.541 25.735 Atomic orbital electron populations 1.70397 1.08466 1.29221 1.36962 1.26917 0.96490 1.04388 0.94068 0.84567 0.78468 0.74027 0.79055 1.18885 1.20125 1.16663 1.20640 0.93445 0.80944 1.53440 0.84129 1.44853 1.03626 1.05106 1.39791 1.21955 0.98715 0.84598 1.17608 1.17326 0.93268 0.83327 1.21558 1.42268 1.09469 1.03398 1.69386 1.17164 0.83957 0.84282 0.77630 1.90679 1.26670 1.74083 1.52282 1.21843 0.91599 0.93583 1.09971 1.22149 1.01194 0.90379 1.07253 1.23756 0.81658 1.02395 1.05109 1.42888 1.06182 1.03385 1.49967 1.18324 0.87851 0.87262 1.00390 1.22296 1.04620 0.89146 1.03295 1.23327 0.86383 1.01438 0.92108 1.67778 1.20691 1.20588 1.12812 1.23098 1.01212 0.86602 0.92584 1.22157 0.91334 1.03310 1.03229 1.73468 1.26250 0.91242 1.19700 1.24187 0.98914 0.91010 1.08897 1.78148 0.92088 1.16357 1.27401 0.91283 0.79577 0.74484 0.80371 0.74402 0.80185 0.78192 0.79619 0.83561 0.81225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.99 11.83 21.66 0.26 -47.73 16 2 C -0.01 -0.36 5.50 84.95 0.47 0.11 16 3 Si 1.02 38.94 29.56 68.60 2.03 40.96 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.24 -8.43 7.11 99.48 0.71 -7.72 16 7 C -0.35 -19.00 10.24 84.01 0.86 -18.14 16 8 H 0.14 6.55 7.84 -2.91 -0.02 6.52 16 9 N -0.17 -9.38 3.74 -190.01 -0.71 -10.09 16 10 C -0.08 -3.77 11.49 83.38 0.96 -2.81 16 11 C -0.05 -2.36 6.90 37.75 0.26 -2.10 16 12 N -0.60 -23.57 5.46 -306.65 -1.67 -25.25 16 13 C 0.58 22.91 7.79 86.74 0.68 23.59 16 14 O -0.56 -25.86 14.07 -4.04 -0.06 -25.91 16 15 C -0.01 -0.26 7.13 42.46 0.30 0.04 16 16 C -0.18 -4.23 10.80 22.42 0.24 -3.98 16 17 C 0.01 0.14 10.82 83.39 0.90 1.05 16 18 N -0.24 -4.79 3.51 -186.72 -0.66 -5.45 16 19 C 0.16 2.49 6.70 38.37 0.26 2.75 16 20 C -0.17 -1.44 9.50 22.48 0.21 -1.23 16 21 C 0.12 1.04 11.17 84.62 0.95 1.99 16 22 N -0.51 -6.90 10.36 -196.06 -2.03 -8.93 16 23 C 0.12 1.56 11.17 84.63 0.95 2.51 16 24 C -0.18 -2.79 9.67 22.48 0.22 -2.57 16 25 N -0.27 -7.22 10.94 -48.16 -0.53 -7.75 16 26 C -0.05 -3.09 10.85 85.42 0.93 -2.16 16 27 N -0.31 -18.97 10.41 -56.46 -0.59 -19.56 16 28 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.19 7.16 8.06 -2.91 -0.02 7.14 16 30 H 0.42 13.50 8.54 -92.71 -0.79 12.70 16 31 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.24 0.88 7.04 -2.91 -0.02 0.86 16 33 H 0.18 0.16 6.78 -2.91 -0.02 0.14 16 34 H 0.20 0.21 8.06 -2.91 -0.02 0.19 16 35 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.15 2.43 7.74 -2.91 -0.02 2.41 16 37 H 0.17 9.55 5.91 -2.91 -0.02 9.54 16 Total: -1.00 -83.01 335.33 4.58 -78.43 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.36 Total: 32.25 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 8.17 Total: -0.97 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -5.93 Total: -124.76 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.06 Total: -25.91 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.96 kcal Total: -83.01 4.58 -78.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116800515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.792 kcal (2) G-P(sol) polarization free energy of solvation -83.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds