Wall clock time and date at job start Tue Mar 31 2020 14:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29417 * 125.69389 * 2 1 4 4 N 1.26398 * 116.47397 * 179.75303 * 3 2 1 5 5 C 1.29416 * 116.47372 * 0.52634 * 4 3 2 6 6 C 1.50700 * 125.69313 * 179.77447 * 5 4 3 7 7 N 1.46492 * 109.47502 * 89.69305 * 6 5 4 8 8 C 1.34778 * 120.00351 * 179.97438 * 7 6 5 9 9 O 1.21345 * 119.99684 * 0.02562 * 8 7 6 10 10 C 1.49449 * 120.00001 * 180.02562 * 8 7 6 11 11 O 1.21347 * 120.00228 * 5.09493 * 10 8 7 12 12 N 1.34774 * 120.00048 * 185.09256 * 10 8 7 13 13 C 1.46502 * 120.00331 * 185.04195 * 12 10 8 14 14 C 1.52996 * 109.47063 * 184.77839 * 13 12 10 15 15 C 1.50698 * 115.55121 * 294.81386 * 14 13 12 16 16 H 1.08003 * 119.99766 * 95.20398 * 15 14 13 17 17 C 1.37874 * 119.99926 * 274.92660 * 15 14 13 18 18 N 1.31507 * 120.00401 * 355.41780 * 17 15 14 19 19 Si 1.86807 * 119.99884 * 175.41717 * 17 15 14 20 20 H 1.48500 * 109.47157 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47138 * 120.00273 * 19 17 15 22 22 H 1.48505 * 109.47155 * 240.00161 * 19 17 15 23 23 C 1.53002 * 117.49906 * 80.48488 * 14 13 12 24 24 C 1.53002 * 117.49925 * 149.14404 * 14 13 12 25 25 S 1.71212 * 125.69821 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.46949 * 269.95802 * 1 2 3 27 27 H 1.09000 * 109.47439 * 29.96297 * 1 2 3 28 28 H 1.09006 * 109.46803 * 149.96070 * 1 2 3 29 29 H 1.08999 * 109.47133 * 329.68986 * 6 5 4 30 30 H 1.09006 * 109.46963 * 209.69558 * 6 5 4 31 31 H 0.97003 * 120.00155 * 0.02562 * 7 6 5 32 32 H 0.97000 * 119.99834 * 5.03638 * 12 10 8 33 33 H 1.08991 * 109.46950 * 64.77719 * 13 12 10 34 34 H 1.09002 * 109.46795 * 304.77265 * 13 12 10 35 35 H 0.97005 * 120.00851 * 184.99676 * 18 17 15 36 36 H 1.09007 * 117.49900 * 214.99948 * 23 14 13 37 37 H 1.08994 * 117.50021 * 0.02562 * 23 14 13 38 38 H 1.09005 * 117.49794 * 359.97438 * 24 14 13 39 39 H 1.09000 * 117.49885 * 144.96827 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0511 0.0000 4 7 3.5097 0.8485 0.0049 5 6 3.8936 -0.3874 -0.0013 6 6 5.3233 -0.8640 -0.0021 7 7 5.7872 -1.0189 1.3787 8 6 7.0443 -1.4385 1.6242 9 8 7.7918 -1.6876 0.7014 10 6 7.5174 -1.5971 3.0330 11 8 6.7439 -1.4377 3.9543 12 7 8.8030 -1.9171 3.2801 13 6 9.2415 -2.1809 4.6529 14 6 10.7554 -2.4009 4.6713 15 6 11.2435 -3.6234 3.9376 16 1 11.5807 -3.5406 2.9149 17 6 11.2650 -4.8464 4.5738 18 7 10.9455 -4.9313 5.8466 19 14 11.7478 -6.3830 3.6275 20 1 12.0601 -6.0210 2.2216 21 1 12.9443 -6.9968 4.2576 22 1 10.6234 -7.3528 3.6514 23 6 11.6500 -1.1599 4.6496 24 6 11.5146 -1.9839 5.9325 25 16 2.5060 -1.3904 -0.0006 26 1 -0.3633 -0.0008 1.0277 27 1 -0.3634 0.8903 -0.5132 28 1 -0.3633 -0.8897 -0.5145 29 1 5.9492 -0.1345 -0.5161 30 1 5.3862 -1.8231 -0.5164 31 1 5.1896 -0.8201 2.1164 32 1 9.4381 -1.9728 2.5490 33 1 8.7401 -3.0724 5.0294 34 1 8.9905 -1.3287 5.2845 35 1 11.0301 -5.7779 6.3126 36 1 12.5917 -1.2277 4.1047 37 1 11.1600 -0.1867 4.6227 38 1 10.9355 -1.5524 6.7490 39 1 12.3668 -2.5941 6.2318 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117406803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:34 Heat of formation + Delta-G solvation = 18.660884 kcal Electronic energy + Delta-G solvation = -23854.474402 eV Core-core repulsion = 20118.549870 eV Total energy + Delta-G solvation = -3735.924531 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.77823 -40.35462 -38.34453 -36.75578 -35.74593 -33.65953 -33.18110 -31.99392 -30.46720 -27.66582 -26.77773 -25.50556 -24.91552 -22.95713 -21.18313 -20.58086 -19.99455 -19.79818 -19.53813 -18.19293 -16.94166 -16.26633 -16.16807 -15.82525 -15.74615 -15.12987 -14.82672 -14.62542 -14.39050 -14.01060 -13.82453 -13.70897 -13.48564 -13.29732 -12.93874 -12.88716 -12.70989 -11.92355 -11.65531 -11.45883 -11.01642 -10.98141 -10.92520 -10.68149 -10.53233 -10.32247 -10.26265 -10.13069 -9.65385 -9.49469 -9.31860 -9.10521 -8.56772 -8.43173 -8.21125 -6.11082 -4.20825 -0.14715 0.38205 0.86399 1.65670 1.98723 2.62481 3.24026 3.33325 3.37193 3.40832 3.48726 3.92276 3.95599 4.33673 4.34582 4.61123 4.82524 4.84330 4.99434 5.10641 5.16451 5.17748 5.31969 5.32427 5.91447 5.93455 6.26369 6.37583 6.45050 6.64000 6.72335 6.88570 7.05413 7.07020 7.29844 7.47390 7.68798 7.79286 8.04323 8.07510 8.29214 8.44643 8.81850 9.47063 10.95955 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021259 B = 0.002416 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.803377 B =11586.739715 C =12096.632802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.016 4.016 3 N -0.262 5.262 4 N -0.234 5.234 5 C -0.045 4.045 6 C 0.204 3.796 7 N -0.706 5.706 8 C 0.515 3.485 9 O -0.511 6.511 10 C 0.497 3.503 11 O -0.539 6.539 12 N -0.664 5.664 13 C 0.159 3.841 14 C 0.020 3.980 15 C -0.500 4.500 16 H 0.063 0.937 17 C 0.073 3.927 18 N -0.876 5.876 19 Si 0.890 3.110 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.210 4.210 24 C -0.139 4.139 25 S 0.200 5.800 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.415 0.585 32 H 0.414 0.586 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.261 0.739 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.850 6.224 -11.233 22.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.294 4.294 3 N -0.101 5.101 4 N -0.073 5.073 5 C -0.324 4.324 6 C 0.077 3.923 7 N -0.363 5.363 8 C 0.296 3.704 9 O -0.385 6.385 10 C 0.276 3.724 11 O -0.418 6.418 12 N -0.313 5.313 13 C 0.037 3.963 14 C 0.019 3.981 15 C -0.537 4.537 16 H 0.081 0.919 17 C -0.131 4.131 18 N -0.512 5.512 19 Si 0.718 3.282 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.247 4.247 24 C -0.177 4.177 25 S 0.443 5.557 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.251 0.749 32 H 0.251 0.749 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.842 6.321 -11.102 22.765 hybrid contribution 0.280 -0.744 -0.360 0.873 sum -18.562 5.577 -11.461 22.517 Atomic orbital electron populations 1.20441 0.83628 1.04922 1.04693 1.29412 1.04661 0.92088 1.03196 1.71529 0.96716 1.26695 1.15175 1.71493 1.06633 1.16907 1.12294 1.29078 1.02890 0.93041 1.07414 1.19671 0.85037 1.02804 0.84783 1.45671 1.14310 1.68181 1.08125 1.20533 0.81770 0.77447 0.90681 1.90779 1.54242 1.47748 1.45750 1.19766 0.84188 0.80190 0.88212 1.90727 1.54658 1.51133 1.45244 1.45893 1.08345 1.64482 1.12623 1.21238 0.96571 0.99432 0.79099 1.19042 0.87251 0.92821 0.98991 1.20424 1.44074 0.90440 0.98796 0.91907 1.24994 0.94385 0.98827 0.94914 1.69992 1.46666 1.25915 1.08591 0.86562 0.78076 0.83175 0.80396 1.19551 1.21017 1.20924 1.23039 1.02645 0.94954 1.04053 1.22479 1.03327 1.01707 0.90217 1.83890 0.97017 1.10927 1.63848 0.88743 0.88594 0.89458 0.87354 0.88166 0.74911 0.74913 0.90705 0.93308 0.92887 0.90180 0.91613 0.91724 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.48 36.00 0.38 0.08 16 2 C -0.02 -0.13 7.53 -13.30 -0.10 -0.23 16 3 N -0.26 -3.01 11.66 32.58 0.38 -2.63 16 4 N -0.23 -2.86 11.66 32.58 0.38 -2.48 16 5 C -0.05 -0.45 6.90 -13.30 -0.09 -0.54 16 6 C 0.20 2.03 6.27 -5.20 -0.03 2.00 16 7 N -0.71 -8.66 5.54 -61.91 -0.34 -9.00 16 8 C 0.51 7.99 7.89 -11.59 -0.09 7.90 16 9 O -0.51 -8.77 16.50 5.50 0.09 -8.68 16 10 C 0.50 9.04 7.88 -11.59 -0.09 8.95 16 11 O -0.54 -10.69 16.47 5.50 0.09 -10.60 16 12 N -0.66 -12.93 5.46 -60.73 -0.33 -13.26 16 13 C 0.16 3.47 5.53 -4.04 -0.02 3.44 16 14 C 0.02 0.46 1.47 -155.66 -0.23 0.23 16 15 C -0.50 -12.76 8.59 -34.44 -0.30 -13.06 16 16 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 17 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 18 N -0.88 -23.80 12.65 55.43 0.70 -23.10 16 19 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.21 -4.32 9.96 -26.69 -0.27 -4.59 16 24 C -0.14 -3.12 9.14 -26.69 -0.24 -3.36 16 25 S 0.20 1.42 23.04 -107.50 -2.48 -1.05 16 26 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.41 4.92 7.95 -40.82 -0.32 4.60 16 32 H 0.41 7.95 7.84 -40.82 -0.32 7.63 16 33 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 35 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 36 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -31.03 362.30 -7.09 -38.12 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -4.84 Total: 9.13 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.18 Total: 2.63 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.79 Total: -50.47 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.18 Total: -19.28 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.48 Total: -1.05 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.03 -7.09 -38.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117406803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.786 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds