Wall clock time and date at job start Tue Mar 31 2020 14:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29417 * 125.69389 * 2 1 4 4 N 1.26398 * 116.47397 * 179.75303 * 3 2 1 5 5 C 1.29416 * 116.47372 * 0.52634 * 4 3 2 6 6 C 1.50700 * 125.69313 * 179.77447 * 5 4 3 7 7 N 1.46492 * 109.47502 * 89.69305 * 6 5 4 8 8 C 1.34778 * 120.00351 * 179.97438 * 7 6 5 9 9 O 1.21345 * 119.99684 * 0.02562 * 8 7 6 10 10 C 1.49449 * 120.00001 * 180.02562 * 8 7 6 11 11 O 1.21347 * 120.00228 * 5.09493 * 10 8 7 12 12 N 1.34774 * 120.00048 * 185.09256 * 10 8 7 13 13 C 1.46502 * 120.00331 * 185.04195 * 12 10 8 14 14 C 1.52996 * 109.47063 * 184.77839 * 13 12 10 15 15 C 1.50698 * 115.55121 * 294.81386 * 14 13 12 16 16 H 1.08003 * 119.99766 * 95.20398 * 15 14 13 17 17 C 1.37874 * 119.99926 * 274.92660 * 15 14 13 18 18 N 1.31507 * 120.00401 * 355.41780 * 17 15 14 19 19 Si 1.86807 * 119.99884 * 175.41717 * 17 15 14 20 20 H 1.48500 * 109.47157 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47138 * 120.00273 * 19 17 15 22 22 H 1.48505 * 109.47155 * 240.00161 * 19 17 15 23 23 C 1.53002 * 117.49906 * 80.48488 * 14 13 12 24 24 C 1.53002 * 117.49925 * 149.14404 * 14 13 12 25 25 S 1.71212 * 125.69821 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.46949 * 269.95802 * 1 2 3 27 27 H 1.09000 * 109.47439 * 29.96297 * 1 2 3 28 28 H 1.09006 * 109.46803 * 149.96070 * 1 2 3 29 29 H 1.08999 * 109.47133 * 329.68986 * 6 5 4 30 30 H 1.09006 * 109.46963 * 209.69558 * 6 5 4 31 31 H 0.97003 * 120.00155 * 0.02562 * 7 6 5 32 32 H 0.97000 * 119.99834 * 5.03638 * 12 10 8 33 33 H 1.08991 * 109.46950 * 64.77719 * 13 12 10 34 34 H 1.09002 * 109.46795 * 304.77265 * 13 12 10 35 35 H 0.97005 * 120.00851 * 184.99676 * 18 17 15 36 36 H 1.09007 * 117.49900 * 214.99948 * 23 14 13 37 37 H 1.08994 * 117.50021 * 0.02562 * 23 14 13 38 38 H 1.09005 * 117.49794 * 359.97438 * 24 14 13 39 39 H 1.09000 * 117.49885 * 144.96827 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0511 0.0000 4 7 3.5097 0.8485 0.0049 5 6 3.8936 -0.3874 -0.0013 6 6 5.3233 -0.8640 -0.0021 7 7 5.7872 -1.0189 1.3787 8 6 7.0443 -1.4385 1.6242 9 8 7.7918 -1.6876 0.7014 10 6 7.5174 -1.5971 3.0330 11 8 6.7439 -1.4377 3.9543 12 7 8.8030 -1.9171 3.2801 13 6 9.2415 -2.1809 4.6529 14 6 10.7554 -2.4009 4.6713 15 6 11.2435 -3.6234 3.9376 16 1 11.5807 -3.5406 2.9149 17 6 11.2650 -4.8464 4.5738 18 7 10.9455 -4.9313 5.8466 19 14 11.7478 -6.3830 3.6275 20 1 12.0601 -6.0210 2.2216 21 1 12.9443 -6.9968 4.2576 22 1 10.6234 -7.3528 3.6514 23 6 11.6500 -1.1599 4.6496 24 6 11.5146 -1.9839 5.9325 25 16 2.5060 -1.3904 -0.0006 26 1 -0.3633 -0.0008 1.0277 27 1 -0.3634 0.8903 -0.5132 28 1 -0.3633 -0.8897 -0.5145 29 1 5.9492 -0.1345 -0.5161 30 1 5.3862 -1.8231 -0.5164 31 1 5.1896 -0.8201 2.1164 32 1 9.4381 -1.9728 2.5490 33 1 8.7401 -3.0724 5.0294 34 1 8.9905 -1.3287 5.2845 35 1 11.0301 -5.7779 6.3126 36 1 12.5917 -1.2277 4.1047 37 1 11.1600 -0.1867 4.6227 38 1 10.9355 -1.5524 6.7490 39 1 12.3668 -2.5941 6.2318 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117406803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:34 Heat of formation + Delta-G solvation = -4.515481 kcal Electronic energy + Delta-G solvation = -23855.479404 eV Core-core repulsion = 20118.549870 eV Total energy + Delta-G solvation = -3736.929534 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.50905 -41.68798 -39.77252 -38.47491 -36.78880 -35.06269 -34.03442 -33.94547 -31.21591 -28.92758 -27.96262 -27.29816 -25.76431 -24.21423 -22.90880 -21.56362 -21.39238 -20.97394 -20.48445 -19.59474 -18.18326 -17.95031 -17.17354 -17.11687 -16.71049 -16.57434 -16.38543 -15.94232 -15.62023 -15.39056 -14.89736 -14.58361 -14.44514 -14.40128 -13.95154 -13.86122 -13.63930 -13.47772 -13.34609 -12.94584 -12.85858 -12.84619 -12.34307 -12.01449 -11.60578 -11.42623 -11.35461 -11.10658 -10.96605 -10.74825 -10.69256 -10.52601 -10.45599 -10.13446 -9.96999 -8.09999 -6.23720 -0.79817 -0.22693 0.21536 0.30724 1.12085 1.40890 1.45588 1.53144 1.54959 2.10673 2.42574 2.63050 2.73613 3.17479 3.36142 3.41480 3.58484 3.70598 4.07562 4.19786 4.32598 4.39633 4.51669 4.60691 4.62679 4.69040 4.70262 4.85721 4.91937 5.02576 5.06333 5.28796 5.32889 5.52541 5.68059 5.78249 5.83140 6.34503 6.37168 6.65839 6.83498 6.95473 7.38232 7.46163 8.96747 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021259 B = 0.002416 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.803377 B =11586.739715 C =12096.632802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.014 4.014 3 N -0.303 5.303 4 N -0.267 5.267 5 C -0.065 4.065 6 C 0.204 3.796 7 N -0.690 5.690 8 C 0.524 3.476 9 O -0.528 6.528 10 C 0.498 3.502 11 O -0.556 6.556 12 N -0.667 5.667 13 C 0.174 3.826 14 C -0.003 4.003 15 C -0.506 4.506 16 H 0.059 0.941 17 C 0.027 3.973 18 N -0.904 5.904 19 Si 0.946 3.054 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.285 1.285 23 C -0.181 4.181 24 C -0.146 4.146 25 S 0.260 5.740 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.417 0.583 32 H 0.416 0.584 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.260 0.740 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.290 6.070 -12.573 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.292 4.292 3 N -0.142 5.142 4 N -0.107 5.107 5 C -0.344 4.344 6 C 0.078 3.922 7 N -0.345 5.345 8 C 0.305 3.695 9 O -0.404 6.404 10 C 0.278 3.722 11 O -0.436 6.436 12 N -0.317 5.317 13 C 0.051 3.949 14 C -0.004 4.004 15 C -0.543 4.543 16 H 0.077 0.923 17 C -0.174 4.174 18 N -0.541 5.541 19 Si 0.772 3.228 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.211 1.211 23 C -0.219 4.219 24 C -0.184 4.184 25 S 0.504 5.496 26 H 0.126 0.874 27 H 0.117 0.883 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.254 0.746 32 H 0.253 0.747 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.312 6.183 -12.466 24.622 hybrid contribution 0.596 -0.687 0.044 0.910 sum -19.716 5.496 -12.422 23.943 Atomic orbital electron populations 1.20707 0.80932 1.06387 1.05959 1.30077 1.06325 0.91937 1.00834 1.71503 0.96830 1.28412 1.17440 1.71446 1.07508 1.18419 1.13280 1.29003 1.03649 0.93457 1.08242 1.19819 0.85398 1.03848 0.83103 1.45607 1.13027 1.66335 1.09553 1.19885 0.82651 0.78043 0.88946 1.90781 1.54940 1.49106 1.45565 1.20213 0.83456 0.79065 0.89447 1.90713 1.54935 1.51631 1.46303 1.45785 1.09108 1.65063 1.11706 1.20843 0.95449 0.98177 0.80422 1.19090 0.88159 0.93546 0.99579 1.20680 1.43397 0.91517 0.98747 0.92272 1.25643 0.94794 1.01321 0.95604 1.70091 1.47994 1.26328 1.09727 0.85690 0.77541 0.80107 0.79425 1.19039 1.20860 1.21143 1.23026 1.02014 0.94924 1.01894 1.22399 1.02739 1.02308 0.91000 1.83648 0.94650 1.08952 1.62339 0.87362 0.88262 0.86851 0.87465 0.86200 0.74570 0.74688 0.93924 0.92709 0.93077 0.89881 0.89262 0.90705 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.48 71.24 0.75 0.33 16 2 C -0.01 -0.20 7.53 88.46 0.67 0.46 16 3 N -0.30 -6.73 11.66 -50.85 -0.59 -7.33 16 4 N -0.27 -6.40 11.66 -50.85 -0.59 -6.99 16 5 C -0.06 -1.19 6.90 88.46 0.61 -0.58 16 6 C 0.20 3.77 6.27 85.63 0.54 4.31 16 7 N -0.69 -16.06 5.54 -468.16 -2.59 -18.65 16 8 C 0.52 15.74 7.89 87.27 0.69 16.43 16 9 O -0.53 -17.52 16.50 -3.23 -0.05 -17.57 16 10 C 0.50 17.83 7.88 87.27 0.69 18.52 16 11 O -0.56 -21.82 16.47 -3.24 -0.05 -21.87 16 12 N -0.67 -25.75 5.46 -464.43 -2.54 -28.28 16 13 C 0.17 7.62 5.53 86.38 0.48 8.10 16 14 C 0.00 -0.14 1.47 -52.93 -0.08 -0.22 16 15 C -0.51 -25.83 8.59 25.60 0.22 -25.61 16 16 H 0.06 3.00 7.82 -2.91 -0.02 2.97 16 17 C 0.03 1.44 5.43 84.65 0.46 1.90 16 18 N -0.90 -49.83 12.65 21.45 0.27 -49.55 16 19 Si 0.95 42.15 29.54 68.60 2.03 44.18 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 23 C -0.18 -7.22 9.96 30.62 0.30 -6.92 16 24 C -0.15 -6.53 9.14 30.62 0.28 -6.25 16 25 S 0.26 3.10 23.04 -56.49 -1.30 1.80 16 26 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.11 0.02 8.14 -2.38 -0.02 0.00 16 29 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.42 9.43 7.95 -92.71 -0.74 8.69 16 32 H 0.42 15.77 7.84 -92.71 -0.73 15.04 16 33 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.05 2.30 8.05 -2.39 -0.02 2.28 16 35 H 0.26 13.78 8.32 -92.70 -0.77 13.01 16 36 H 0.08 3.25 8.14 -2.38 -0.02 3.24 16 37 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 39 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -66.84 362.30 -0.18 -67.02 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -0.35 Total: 26.78 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 5.60 Total: 10.47 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -6.04 Total: -110.81 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -0.11 Total: -39.45 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.30 Total: 1.80 kcal Total: -66.84 -0.18 -67.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117406803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.505 kcal (2) G-P(sol) polarization free energy of solvation -66.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds