Wall clock time and date at job start Tue Mar 31 2020 13:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32106 * 120.46589 * 2 1 4 4 C 1.32561 * 121.15777 * 179.97438 * 3 2 1 5 5 O 1.35295 * 118.94858 * 180.02562 * 4 3 2 6 6 N 1.32258 * 122.10231 * 359.97438 * 4 3 2 7 7 C 1.32911 * 120.78439 * 359.74864 * 6 4 3 8 8 S 1.76196 * 120.61883 * 180.26521 * 7 6 4 9 9 C 1.39829 * 120.46284 * 179.97438 * 2 1 3 10 10 C 1.47209 * 120.94173 * 0.02761 * 9 2 1 11 11 O 1.21629 * 120.00323 * 89.99734 * 10 9 2 12 12 N 1.34778 * 119.99643 * 269.99890 * 10 9 2 13 13 C 1.46966 * 120.59146 * 180.02562 * 12 10 9 14 14 C 1.53376 * 108.63466 * 235.24493 * 13 12 10 15 15 N 1.46968 * 108.63457 * 310.57917 * 14 13 12 16 16 C 1.36937 * 120.59055 * 235.20386 * 15 14 13 17 17 H 1.07997 * 120.00034 * 28.27851 * 16 15 14 18 18 C 1.38806 * 119.99615 * 208.56371 * 16 15 14 19 19 N 1.31620 * 120.00437 * 17.30811 * 18 16 15 20 20 Si 1.86800 * 119.99904 * 197.31053 * 18 16 15 21 21 H 1.48502 * 109.47086 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47060 * 119.99742 * 20 18 16 23 23 H 1.48496 * 109.47229 * 239.99810 * 20 18 16 24 24 C 1.46960 * 118.81400 * 55.47579 * 15 14 13 25 25 C 1.46965 * 120.59722 * 0.02562 * 12 10 9 26 26 H 1.08998 * 109.46609 * 270.02450 * 1 2 3 27 27 H 1.09001 * 109.46610 * 30.01661 * 1 2 3 28 28 H 1.08999 * 109.47274 * 150.01827 * 1 2 3 29 29 H 0.96704 * 114.00467 * 90.00009 * 5 4 3 30 30 H 1.41001 * 100.00168 * 270.26006 * 8 7 6 31 31 H 1.08997 * 109.60957 * 115.50322 * 13 12 10 32 32 H 1.08992 * 109.61068 * 354.99229 * 13 12 10 33 33 H 1.08998 * 109.60957 * 190.83139 * 14 13 12 34 34 H 1.09001 * 109.60896 * 70.31950 * 14 13 12 35 35 H 0.96998 * 120.00790 * 179.97438 * 19 18 16 36 36 H 1.09011 * 109.61027 * 64.26353 * 24 15 14 37 37 H 1.09000 * 109.60956 * 184.77581 * 24 15 14 38 38 H 1.08998 * 109.61178 * 244.50230 * 25 12 10 39 39 H 1.09005 * 109.60650 * 4.83670 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1769 1.1387 0.0000 4 6 3.5024 1.1547 0.0005 5 8 4.1429 2.3464 0.0010 6 7 4.2187 0.0429 0.0015 7 6 3.6273 -1.1474 0.0071 8 16 4.5859 -2.6257 0.0155 9 6 2.2160 -1.2053 0.0005 10 6 1.5114 -2.4978 0.0005 11 8 1.2207 -3.0320 -1.0528 12 7 1.1884 -3.0892 1.1678 13 6 0.4855 -4.3798 1.1830 14 6 -0.7939 -4.2313 2.0157 15 7 -0.4499 -3.5969 3.2960 16 6 -0.7788 -4.1974 4.4819 17 1 -0.8603 -5.2728 4.5383 18 6 -1.0131 -3.4235 5.6101 19 7 -1.2572 -2.1361 5.4861 20 14 -0.9822 -4.2091 7.3046 21 1 -0.6882 -5.6588 7.1728 22 1 0.0696 -3.5634 8.1305 23 1 -2.3038 -4.0299 7.9576 24 6 0.2480 -2.3036 3.2808 25 6 1.5328 -2.4551 2.4481 26 1 -0.3632 0.0004 1.0277 27 1 -0.3632 0.8899 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 4.3288 2.6927 0.8846 30 1 4.7256 -2.8349 -1.3719 31 1 1.1263 -5.1401 1.6294 32 1 0.2274 -4.6678 0.1640 33 1 -1.2271 -5.2145 2.1993 34 1 -1.5093 -3.6079 1.4792 35 1 -1.4213 -1.5953 6.2745 36 1 -0.3949 -1.5462 2.8322 37 1 0.5030 -2.0135 4.3001 38 1 2.2481 -3.0786 2.9844 39 1 1.9691 -1.4732 2.2643 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123675572.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:07 Heat of formation + Delta-G solvation = 24.202370 kcal Electronic energy + Delta-G solvation = -26073.942594 eV Core-core repulsion = 22338.258359 eV Total energy + Delta-G solvation = -3735.684235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.62129 -39.63838 -37.66931 -36.87404 -34.81168 -34.00044 -32.48734 -31.21778 -30.23870 -29.07360 -27.09826 -25.28243 -23.79810 -23.41149 -22.90055 -21.02517 -19.54481 -19.17415 -18.55843 -17.81667 -17.51152 -16.67362 -16.23406 -15.91605 -14.90350 -14.80266 -14.61826 -14.37180 -13.90504 -13.76420 -13.66113 -13.40934 -13.37493 -13.07439 -12.71165 -12.39604 -12.35095 -12.05512 -11.80792 -11.68320 -11.42642 -10.92894 -10.83912 -10.67488 -10.57772 -10.34055 -10.13854 -9.97612 -9.81883 -9.58578 -9.44256 -8.69860 -8.50541 -8.39311 -6.81225 -5.93928 -3.38130 0.04503 0.44210 0.99845 2.15142 2.54355 2.69576 3.12530 3.26398 3.29442 3.38599 3.40226 3.75057 4.14489 4.38082 4.46457 4.66665 4.91682 5.15095 5.25939 5.44595 5.46637 5.50097 5.64778 5.73864 5.82125 5.96943 6.03273 6.09053 6.20709 6.28522 6.30984 6.66960 6.78890 7.05443 7.06879 7.32511 7.51824 7.62694 7.69075 8.22368 8.27322 9.03597 9.66074 10.22039 11.14074 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.004184 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.366691 B = 6690.453826 C = 7161.028955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.239 3.761 3 N -0.508 5.508 4 C 0.504 3.496 5 O -0.454 6.454 6 N -0.494 5.494 7 C 0.207 3.793 8 S -0.078 6.078 9 C -0.184 4.184 10 C 0.574 3.426 11 O -0.543 6.543 12 N -0.573 5.573 13 C 0.096 3.904 14 C 0.131 3.869 15 N -0.590 5.590 16 C -0.255 4.255 17 H 0.070 0.930 18 C 0.005 3.995 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.290 1.290 24 C 0.160 3.840 25 C 0.082 3.918 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.415 0.585 30 H 0.121 0.879 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.025 0.975 35 H 0.255 0.745 36 H 0.024 0.976 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.158 3.875 -8.961 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.089 3.911 3 N -0.233 5.233 4 C 0.197 3.803 5 O -0.258 6.258 6 N -0.221 5.221 7 C -0.051 4.051 8 S 0.079 5.921 9 C -0.196 4.196 10 C 0.358 3.642 11 O -0.423 6.423 12 N -0.303 5.303 13 C -0.028 4.028 14 C 0.004 3.996 15 N -0.312 5.312 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.217 1.217 24 C 0.033 3.967 25 C -0.042 4.042 26 H 0.124 0.876 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.276 0.724 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.004 3.840 -9.688 13.772 hybrid contribution -0.531 0.129 0.554 0.778 sum 8.473 3.968 -9.133 13.075 Atomic orbital electron populations 1.21036 0.85888 1.05007 1.05487 1.21813 0.97874 0.85054 0.86319 1.67857 1.09121 1.30736 1.15625 1.20407 0.84007 0.85410 0.90474 1.84667 1.76335 1.30191 1.34631 1.68539 1.40850 0.97637 1.15062 1.22860 0.91198 0.95383 0.95687 1.87260 1.69956 1.21336 1.13594 1.22061 0.94817 0.97469 1.05264 1.17321 0.79042 0.83247 0.84579 1.90794 1.55886 1.64688 1.30884 1.47954 1.55073 1.21969 1.05334 1.22343 0.95509 0.83346 1.01580 1.21331 0.92629 0.97971 0.87682 1.43998 1.64975 1.21578 1.00669 1.19250 1.42047 0.90988 0.86176 0.91265 1.25061 0.99338 0.96036 0.98978 1.70001 1.50476 1.05665 1.28543 0.86215 0.77341 0.78903 0.84261 1.20124 1.21468 1.21675 1.21279 0.88152 0.87601 0.99649 1.22798 1.01283 0.96130 0.83997 0.87648 0.88849 0.89208 0.72424 0.91458 0.91172 0.89656 0.91205 0.95697 0.93486 0.95758 0.88033 0.90936 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.85 36.01 0.35 -1.11 16 2 C 0.24 3.42 6.74 -81.88 -0.55 2.87 16 3 N -0.51 -7.21 10.38 -10.68 -0.11 -7.32 16 4 C 0.50 6.89 8.69 -91.09 -0.79 6.10 16 5 O -0.45 -4.94 13.63 -17.58 -0.24 -5.18 16 6 N -0.49 -7.15 10.45 -13.12 -0.14 -7.28 16 7 C 0.21 3.04 7.14 -15.94 -0.11 2.93 16 8 S -0.08 -1.02 25.14 -107.50 -2.70 -3.72 16 9 C -0.18 -2.81 3.65 -104.51 -0.38 -3.19 16 10 C 0.57 9.49 4.81 -12.62 -0.06 9.43 16 11 O -0.54 -10.10 16.51 5.25 0.09 -10.02 16 12 N -0.57 -9.56 2.95 -173.54 -0.51 -10.07 16 13 C 0.10 1.58 6.59 -3.59 -0.02 1.56 16 14 C 0.13 2.47 6.67 -3.59 -0.02 2.45 16 15 N -0.59 -13.27 2.96 -171.74 -0.51 -13.78 16 16 C -0.26 -6.40 9.57 -15.06 -0.14 -6.55 16 17 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 18 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 19 N -0.90 -24.21 11.19 55.49 0.62 -23.59 16 20 Si 0.90 20.33 29.59 -169.99 -5.03 15.30 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 24 C 0.16 3.36 5.54 -3.35 -0.02 3.34 16 25 C 0.08 1.41 6.52 -3.35 -0.02 1.39 16 26 H 0.11 1.34 8.05 -51.93 -0.42 0.93 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.18 7.17 -51.93 -0.37 0.81 16 29 H 0.42 2.28 9.06 45.56 0.41 2.69 16 30 H 0.12 1.39 9.55 96.90 0.93 2.32 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.35 6.99 -51.93 -0.36 0.99 16 33 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.02 0.53 8.06 -51.92 -0.42 0.11 16 37 H 0.10 2.41 5.99 -51.93 -0.31 2.10 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.06 0.91 6.23 -51.93 -0.32 0.59 16 LS Contribution 342.62 15.07 5.16 5.16 Total: -1.00 -30.40 342.62 -7.75 -38.15 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -2.52 Total: 3.10 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: -1.86 Total: 19.25 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.65 Total: -62.04 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.15 Total: -15.20 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -2.70 Total: -3.72 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.40 -7.75 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123675572.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.355 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds