Wall clock time and date at job start Tue Mar 31 2020 13:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32106 * 120.46589 * 2 1 4 4 C 1.32561 * 121.15777 * 179.97438 * 3 2 1 5 5 O 1.35295 * 118.94858 * 180.02562 * 4 3 2 6 6 N 1.32258 * 122.10231 * 359.97438 * 4 3 2 7 7 C 1.32911 * 120.78439 * 359.74864 * 6 4 3 8 8 S 1.76196 * 120.61883 * 180.26521 * 7 6 4 9 9 C 1.39829 * 120.46284 * 179.97438 * 2 1 3 10 10 C 1.47209 * 120.94173 * 0.02761 * 9 2 1 11 11 O 1.21629 * 120.00323 * 89.99734 * 10 9 2 12 12 N 1.34778 * 119.99643 * 269.99890 * 10 9 2 13 13 C 1.46966 * 120.59146 * 180.02562 * 12 10 9 14 14 C 1.53376 * 108.63466 * 235.24493 * 13 12 10 15 15 N 1.46968 * 108.63457 * 310.57917 * 14 13 12 16 16 C 1.36937 * 120.59055 * 235.20386 * 15 14 13 17 17 H 1.07997 * 120.00034 * 28.27851 * 16 15 14 18 18 C 1.38806 * 119.99615 * 208.56371 * 16 15 14 19 19 N 1.31620 * 120.00437 * 17.30811 * 18 16 15 20 20 Si 1.86800 * 119.99904 * 197.31053 * 18 16 15 21 21 H 1.48502 * 109.47086 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47060 * 119.99742 * 20 18 16 23 23 H 1.48496 * 109.47229 * 239.99810 * 20 18 16 24 24 C 1.46960 * 118.81400 * 55.47579 * 15 14 13 25 25 C 1.46965 * 120.59722 * 0.02562 * 12 10 9 26 26 H 1.08998 * 109.46609 * 270.02450 * 1 2 3 27 27 H 1.09001 * 109.46610 * 30.01661 * 1 2 3 28 28 H 1.08999 * 109.47274 * 150.01827 * 1 2 3 29 29 H 0.96704 * 114.00467 * 90.00009 * 5 4 3 30 30 H 1.41001 * 100.00168 * 270.26006 * 8 7 6 31 31 H 1.08997 * 109.60957 * 115.50322 * 13 12 10 32 32 H 1.08992 * 109.61068 * 354.99229 * 13 12 10 33 33 H 1.08998 * 109.60957 * 190.83139 * 14 13 12 34 34 H 1.09001 * 109.60896 * 70.31950 * 14 13 12 35 35 H 0.96998 * 120.00790 * 179.97438 * 19 18 16 36 36 H 1.09011 * 109.61027 * 64.26353 * 24 15 14 37 37 H 1.09000 * 109.60956 * 184.77581 * 24 15 14 38 38 H 1.08998 * 109.61178 * 244.50230 * 25 12 10 39 39 H 1.09005 * 109.60650 * 4.83670 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1769 1.1387 0.0000 4 6 3.5024 1.1547 0.0005 5 8 4.1429 2.3464 0.0010 6 7 4.2187 0.0429 0.0015 7 6 3.6273 -1.1474 0.0071 8 16 4.5859 -2.6257 0.0155 9 6 2.2160 -1.2053 0.0005 10 6 1.5114 -2.4978 0.0005 11 8 1.2207 -3.0320 -1.0528 12 7 1.1884 -3.0892 1.1678 13 6 0.4855 -4.3798 1.1830 14 6 -0.7939 -4.2313 2.0157 15 7 -0.4499 -3.5969 3.2960 16 6 -0.7788 -4.1974 4.4819 17 1 -0.8603 -5.2728 4.5383 18 6 -1.0131 -3.4235 5.6101 19 7 -1.2572 -2.1361 5.4861 20 14 -0.9822 -4.2091 7.3046 21 1 -0.6882 -5.6588 7.1728 22 1 0.0696 -3.5634 8.1305 23 1 -2.3038 -4.0299 7.9576 24 6 0.2480 -2.3036 3.2808 25 6 1.5328 -2.4551 2.4481 26 1 -0.3632 0.0004 1.0277 27 1 -0.3632 0.8899 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 4.3288 2.6927 0.8846 30 1 4.7256 -2.8349 -1.3719 31 1 1.1263 -5.1401 1.6294 32 1 0.2274 -4.6678 0.1640 33 1 -1.2271 -5.2145 2.1993 34 1 -1.5093 -3.6079 1.4792 35 1 -1.4213 -1.5953 6.2745 36 1 -0.3949 -1.5462 2.8322 37 1 0.5030 -2.0135 4.3001 38 1 2.2481 -3.0786 2.9844 39 1 1.9691 -1.4732 2.2643 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123675572.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:06 Heat of formation + Delta-G solvation = -0.223771 kcal Electronic energy + Delta-G solvation = -26075.001791 eV Core-core repulsion = 22338.258359 eV Total energy + Delta-G solvation = -3736.743432 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.72890 -40.94532 -38.72288 -38.32314 -35.88780 -35.62728 -33.77523 -32.80967 -31.78009 -30.17452 -28.69010 -26.53878 -25.32622 -24.61526 -24.36354 -22.49429 -20.65825 -20.48579 -19.65728 -19.21213 -18.63782 -17.90950 -17.71213 -17.27465 -16.63124 -16.05535 -15.78784 -15.54274 -15.30549 -15.23622 -15.21340 -14.94430 -14.71462 -14.11821 -13.92031 -13.61712 -13.37344 -13.31814 -13.21275 -13.11061 -12.72834 -12.68953 -12.46078 -12.18782 -11.99292 -11.90695 -11.72937 -11.63645 -11.18430 -10.69431 -10.61353 -10.53658 -9.89721 -9.51757 -8.62456 -7.85697 -5.31930 -1.04071 -0.63940 -0.06074 1.17939 1.25950 1.50471 1.54800 1.62946 1.66024 1.93150 2.12338 2.54416 2.67868 3.00395 3.25960 3.30400 3.59128 3.60507 3.87328 4.16108 4.25098 4.39831 4.42828 4.46784 4.52077 4.55878 4.67841 4.74201 4.86672 4.97855 5.12552 5.23264 5.27671 5.49011 5.61330 5.69904 6.28157 6.33937 6.39808 6.44281 6.89305 7.15128 7.83057 8.35341 9.19786 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.004184 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.366691 B = 6690.453826 C = 7161.028955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.239 3.761 3 N -0.515 5.515 4 C 0.509 3.491 5 O -0.454 6.454 6 N -0.503 5.503 7 C 0.207 3.793 8 S -0.081 6.081 9 C -0.204 4.204 10 C 0.585 3.415 11 O -0.562 6.562 12 N -0.575 5.575 13 C 0.105 3.895 14 C 0.131 3.869 15 N -0.606 5.606 16 C -0.259 4.259 17 H 0.071 0.929 18 C -0.043 4.043 19 N -0.932 5.932 20 Si 0.961 3.039 21 H -0.267 1.267 22 H -0.291 1.291 23 H -0.297 1.297 24 C 0.168 3.832 25 C 0.102 3.898 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.438 0.562 30 H 0.138 0.862 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.019 0.981 35 H 0.251 0.749 36 H 0.010 0.990 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.144 3.727 -9.517 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 N -0.241 5.241 4 C 0.203 3.797 5 O -0.262 6.262 6 N -0.230 5.230 7 C -0.051 4.051 8 S 0.075 5.925 9 C -0.216 4.216 10 C 0.370 3.630 11 O -0.443 6.443 12 N -0.305 5.305 13 C -0.018 4.018 14 C 0.005 3.995 15 N -0.329 5.329 16 C -0.389 4.389 17 H 0.089 0.911 18 C -0.239 4.239 19 N -0.578 5.578 20 Si 0.790 3.210 21 H -0.191 1.191 22 H -0.218 1.218 23 H -0.224 1.224 24 C 0.042 3.958 25 C -0.022 4.022 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.101 0.899 29 H 0.303 0.697 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.037 0.963 35 H 0.060 0.940 36 H 0.028 0.972 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.010 3.697 -10.249 14.796 hybrid contribution -0.815 0.222 0.650 1.066 sum 9.195 3.919 -9.599 13.858 Atomic orbital electron populations 1.21034 0.85016 1.05605 1.05334 1.22027 0.98504 0.84931 0.85575 1.67944 1.09422 1.30466 1.16294 1.20617 0.84022 0.86031 0.89044 1.84632 1.75867 1.28976 1.36694 1.68630 1.40856 0.97754 1.15781 1.23029 0.91185 0.96008 0.94891 1.87238 1.69579 1.20616 1.15084 1.21948 0.95167 0.96990 1.07500 1.17363 0.78355 0.83318 0.83925 1.90780 1.56671 1.65388 1.31447 1.47931 1.55243 1.22039 1.05239 1.22218 0.94381 0.83548 1.01634 1.21415 0.93829 0.97819 0.86420 1.44229 1.65475 1.21941 1.01254 1.19536 1.40833 0.91257 0.87261 0.91110 1.25685 0.99898 0.96479 1.01790 1.70129 1.52058 1.06727 1.28847 0.85308 0.76562 0.78523 0.80625 1.19140 1.21778 1.22417 1.21061 0.89415 0.86798 0.98574 1.22452 0.99044 0.97051 0.83638 0.88040 0.86943 0.89905 0.69674 0.89712 0.90262 0.88588 0.90490 0.96344 0.94020 0.97182 0.90906 0.90684 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.72 9.85 71.24 0.70 -2.02 16 2 C 0.24 6.55 6.74 42.90 0.29 6.84 16 3 N -0.52 -13.81 10.38 -300.63 -3.12 -16.93 16 4 C 0.51 12.99 8.69 180.51 1.57 14.55 16 5 O -0.45 -8.86 13.63 -85.81 -1.17 -10.03 16 6 N -0.50 -13.66 10.45 -308.51 -3.22 -16.89 16 7 C 0.21 5.76 7.14 85.27 0.61 6.37 16 8 S -0.08 -1.99 25.14 -56.49 -1.42 -3.41 16 9 C -0.20 -5.95 3.65 -19.79 -0.07 -6.02 16 10 C 0.59 18.56 4.81 86.60 0.42 18.98 16 11 O -0.56 -20.12 16.51 -4.12 -0.07 -20.19 16 12 N -0.57 -18.44 2.95 -821.19 -2.42 -20.86 16 13 C 0.11 3.32 6.59 86.42 0.57 3.89 16 14 C 0.13 4.86 6.67 86.42 0.58 5.43 16 15 N -0.61 -27.14 2.96 -697.26 -2.06 -29.21 16 16 C -0.26 -12.92 9.57 84.03 0.80 -12.12 16 17 H 0.07 3.45 7.89 -2.91 -0.02 3.42 16 18 C -0.04 -2.20 4.91 84.86 0.42 -1.78 16 19 N -0.93 -50.75 11.19 21.65 0.24 -50.51 16 20 Si 0.96 41.89 29.59 68.60 2.03 43.92 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.30 -13.18 7.11 99.48 0.71 -12.48 16 24 C 0.17 7.10 5.54 86.58 0.48 7.58 16 25 C 0.10 3.43 6.52 86.58 0.56 3.99 16 26 H 0.10 2.55 8.05 -2.39 -0.02 2.53 16 27 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.08 2.12 7.17 -2.39 -0.02 2.10 16 29 H 0.44 3.75 9.06 -74.05 -0.67 3.08 16 30 H 0.14 2.90 9.55 73.80 0.70 3.61 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.10 2.87 6.99 -2.39 -0.02 2.85 16 33 H 0.08 2.70 7.93 -2.39 -0.02 2.68 16 34 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 36 H 0.01 0.45 8.06 -2.38 -0.02 0.43 16 37 H 0.07 3.53 5.99 -2.39 -0.01 3.51 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.07 2.19 6.23 -2.38 -0.01 2.18 16 Total: -1.00 -63.43 342.62 -3.12 -66.56 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.16 Total: 11.84 kcal Atomic # 6 Polarization: 38.78 SS G_CDS: 6.93 Total: 45.70 kcal Atomic # 7 Polarization: -123.81 SS G_CDS: -10.59 Total: -134.40 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -1.24 Total: -30.21 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -1.42 Total: -3.41 kcal Total: -63.43 -3.12 -66.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123675572.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.334 kcal (2) G-P(sol) polarization free energy of solvation -63.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds