Wall clock time and date at job start Tue Mar 31 2020 13:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99772 * 2 1 4 4 H 1.48505 * 109.47083 * 269.99855 * 3 2 1 5 5 H 1.48500 * 109.47107 * 29.99945 * 3 2 1 6 6 H 1.48502 * 109.46902 * 150.00298 * 3 2 1 7 7 C 1.38796 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00261 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99958 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00388 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47292 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99642 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46995 * 180.02562 * 14 13 11 16 16 N 1.46898 * 109.47006 * 179.97438 * 15 14 13 17 17 C 1.46903 * 110.99673 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.46899 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.46873 * 65.00475 * 18 17 16 20 20 C 1.42904 * 113.99693 * 179.97438 * 19 18 17 21 21 H 1.09000 * 115.55395 * 355.58564 * 20 19 18 22 22 C 1.53006 * 117.49665 * 209.90962 * 20 19 18 23 23 C 1.53006 * 117.49794 * 141.25482 * 20 19 18 24 24 F 1.39902 * 117.49850 * 214.98113 * 23 20 19 25 25 F 1.39899 * 117.49757 * 359.97438 * 23 20 19 26 26 H 0.97001 * 119.99965 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46620 * 59.99992 * 10 9 7 28 28 H 1.09001 * 109.47018 * 299.99940 * 10 9 7 29 29 H 0.96998 * 120.00166 * 0.02562 * 13 11 10 30 30 H 1.09001 * 109.47464 * 60.00642 * 14 13 11 31 31 H 1.09001 * 109.47459 * 300.00357 * 14 13 11 32 32 H 1.09001 * 109.47002 * 299.99701 * 15 14 13 33 33 H 1.08993 * 109.46955 * 60.00138 * 15 14 13 34 34 H 1.00906 * 111.00348 * 56.04933 * 16 15 14 35 35 H 1.08993 * 109.47323 * 299.99830 * 17 16 15 36 36 H 1.08995 * 109.46831 * 60.00909 * 17 16 15 37 37 H 1.08999 * 109.47100 * 185.00294 * 18 17 16 38 38 H 1.09001 * 109.47572 * 305.00496 * 18 17 16 39 39 H 1.08993 * 117.49708 * 0.02562 * 22 20 19 40 40 H 1.08996 * 117.49616 * 144.99741 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8443 -6.3430 -0.0018 14 6 2.3305 -7.7150 -0.0030 15 6 3.5027 -8.6985 -0.0029 16 7 2.9875 -10.0741 -0.0034 17 6 4.0873 -11.0480 -0.0039 18 6 3.5127 -12.4661 -0.0039 19 8 2.8058 -12.6936 -1.2248 20 6 2.2271 -13.9962 -1.3272 21 1 2.4545 -14.6775 -0.5073 22 6 2.0845 -14.5978 -2.7268 23 6 0.8452 -14.1064 -1.9747 24 9 -0.0297 -15.0741 -1.4693 25 9 0.2447 -12.9241 -2.4206 26 1 -0.4850 0.8401 -0.0004 27 1 3.1245 -3.7312 0.8895 28 1 3.1245 -3.7313 -0.8905 29 1 3.8010 -6.1834 -0.0015 30 1 1.7222 -7.8744 -0.8933 31 1 1.7217 -7.8758 0.8867 32 1 4.1118 -8.5378 -0.8924 33 1 4.1106 -8.5389 0.8876 34 1 2.3683 -10.2281 -0.7851 35 1 4.6999 -10.9039 -0.8939 36 1 4.6999 -10.9047 0.8861 37 1 4.3252 -13.1873 0.0854 38 1 2.8302 -12.5816 0.8381 39 1 2.4325 -14.0002 -3.5693 40 1 2.2182 -15.6748 -2.8276 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123791955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:40 Heat of formation + Delta-G solvation = -145.723733 kcal Electronic energy + Delta-G solvation = -23496.274030 eV Core-core repulsion = 19302.532060 eV Total energy + Delta-G solvation = -4193.741970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.02572 -47.70971 -39.27610 -39.05724 -36.98822 -35.18154 -34.01270 -32.41335 -30.83151 -29.13824 -26.62456 -25.43479 -23.30718 -22.79327 -22.54621 -22.31710 -20.33028 -18.63752 -17.88105 -17.70016 -16.80864 -16.64158 -16.43598 -16.31361 -15.90343 -15.61244 -15.15057 -14.80445 -14.78989 -14.38705 -14.25767 -14.04642 -13.96654 -13.78137 -13.66840 -13.23897 -13.02092 -12.70192 -12.52217 -12.30227 -12.07953 -11.94014 -11.55075 -11.42620 -11.05035 -11.00831 -10.90374 -10.74797 -9.89285 -9.80063 -9.39263 -9.05535 -8.87470 -8.85154 -8.21232 -6.48003 -6.19885 -3.90396 2.32284 2.58476 2.75164 2.98695 3.13474 3.23486 3.27536 3.31631 3.58319 3.70268 4.02035 4.06968 4.15455 4.21972 4.44922 4.57118 4.67583 4.74582 4.81062 4.88509 4.93539 5.15136 5.15572 5.20567 5.23795 5.25923 5.28789 5.63969 5.79723 5.92051 5.94148 6.15587 6.35053 6.50877 6.65298 6.98128 7.61062 7.72460 8.36805 8.64510 9.25253 10.87535 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.028314 B = 0.001615 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.673804 B =17329.460966 C =18019.881220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.122 3.878 15 C 0.050 3.950 16 N -0.686 5.686 17 C 0.063 3.937 18 C 0.058 3.942 19 O -0.342 6.342 20 C 0.030 3.970 21 H 0.135 0.865 22 C -0.178 4.178 23 C 0.187 3.813 24 F -0.161 7.161 25 F -0.151 7.151 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.397 0.603 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.354 0.646 35 H 0.042 0.958 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.129 0.871 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.015 -32.102 -2.189 34.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.389 6.389 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.319 5.319 17 C -0.066 4.066 18 C -0.018 4.018 19 O -0.260 6.260 20 C -0.030 4.030 21 H 0.153 0.847 22 C -0.216 4.216 23 C 0.149 3.851 24 F -0.142 7.142 25 F -0.131 7.131 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.231 0.769 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.173 0.827 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.147 0.853 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.691 -32.194 -1.637 33.661 hybrid contribution 2.533 1.249 -0.777 2.929 sum 12.223 -30.945 -2.415 33.359 Atomic orbital electron populations 1.70018 1.05951 1.27443 1.46841 1.24993 0.95027 0.99023 0.94560 0.86166 0.79395 0.81585 0.78327 1.20288 1.20748 1.19717 1.22871 0.94914 0.91684 1.58949 0.90929 1.85421 1.04928 0.96290 1.96710 1.23529 1.06565 0.95363 1.04910 1.20294 0.86514 0.86226 0.75204 1.90712 1.15358 1.85566 1.47303 1.45893 1.09912 1.05461 1.78176 1.21136 0.95716 0.80305 1.03079 1.22095 0.96631 0.88049 1.01229 1.60358 1.18517 1.01853 1.51145 1.21976 0.93181 0.89678 1.01807 1.22860 0.95742 0.96897 0.86313 1.87896 1.69859 1.28791 1.39436 1.24025 0.92567 0.88259 0.98194 0.84717 1.24872 0.95155 1.04001 0.97559 1.20810 0.81986 0.78873 1.03389 1.93043 1.71798 1.61647 1.87690 1.93069 1.85335 1.45259 1.89430 0.92183 0.89195 0.89245 0.76943 0.91729 0.90662 0.94461 0.90285 0.82746 0.94008 0.89001 0.91856 0.91263 0.85263 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.40 9.50 30.94 0.29 -15.10 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 C 0.53 10.16 7.85 -10.98 -0.09 10.08 16 12 O -0.52 -12.10 15.86 5.56 0.09 -12.02 16 13 N -0.74 -10.00 5.56 -60.29 -0.33 -10.33 16 14 C 0.12 1.48 5.93 -4.04 -0.02 1.46 16 15 C 0.05 0.42 5.80 -3.82 -0.02 0.40 16 16 N -0.69 -5.70 6.50 -113.78 -0.74 -6.44 16 17 C 0.06 0.37 6.11 -3.82 -0.02 0.35 16 18 C 0.06 0.30 6.15 37.16 0.23 0.52 16 19 O -0.34 -2.40 10.00 -35.23 -0.35 -2.76 16 20 C 0.03 0.16 6.43 -26.72 -0.17 -0.01 16 21 H 0.14 0.36 7.93 -51.93 -0.41 -0.05 16 22 C -0.18 -0.76 10.45 -26.69 -0.28 -1.04 16 23 C 0.19 1.43 5.26 -26.69 -0.14 1.29 16 24 F -0.16 -1.38 17.60 2.25 0.04 -1.34 16 25 F -0.15 -1.62 17.47 2.25 0.04 -1.58 16 26 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 27 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.40 4.05 8.47 -40.82 -0.35 3.71 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.35 3.24 8.29 -39.29 -0.33 2.91 16 35 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.13 0.24 8.14 -51.93 -0.42 -0.19 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -36.27 371.29 -7.97 -44.23 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.70 Total: 0.61 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.10 Total: -2.95 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.34 Total: -42.42 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.26 Total: -14.77 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.08 Total: -2.92 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.27 -7.97 -44.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123791955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.493 kcal (2) G-P(sol) polarization free energy of solvation -36.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds