Wall clock time and date at job start Tue Mar 31 2020 13:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99772 * 2 1 4 4 H 1.48505 * 109.47083 * 269.99855 * 3 2 1 5 5 H 1.48500 * 109.47107 * 29.99945 * 3 2 1 6 6 H 1.48502 * 109.46902 * 150.00298 * 3 2 1 7 7 C 1.38796 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00261 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99958 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00388 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47292 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99642 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46995 * 180.02562 * 14 13 11 16 16 N 1.46898 * 109.47006 * 179.97438 * 15 14 13 17 17 C 1.46903 * 110.99673 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.46899 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.46873 * 65.00475 * 18 17 16 20 20 C 1.42904 * 113.99693 * 179.97438 * 19 18 17 21 21 H 1.09000 * 115.55395 * 355.58564 * 20 19 18 22 22 C 1.53006 * 117.49665 * 209.90962 * 20 19 18 23 23 C 1.53006 * 117.49794 * 141.25482 * 20 19 18 24 24 F 1.39902 * 117.49850 * 214.98113 * 23 20 19 25 25 F 1.39899 * 117.49757 * 359.97438 * 23 20 19 26 26 H 0.97001 * 119.99965 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46620 * 59.99992 * 10 9 7 28 28 H 1.09001 * 109.47018 * 299.99940 * 10 9 7 29 29 H 0.96998 * 120.00166 * 0.02562 * 13 11 10 30 30 H 1.09001 * 109.47464 * 60.00642 * 14 13 11 31 31 H 1.09001 * 109.47459 * 300.00357 * 14 13 11 32 32 H 1.09001 * 109.47002 * 299.99701 * 15 14 13 33 33 H 1.08993 * 109.46955 * 60.00138 * 15 14 13 34 34 H 1.00906 * 111.00348 * 56.04933 * 16 15 14 35 35 H 1.08993 * 109.47323 * 299.99830 * 17 16 15 36 36 H 1.08995 * 109.46831 * 60.00909 * 17 16 15 37 37 H 1.08999 * 109.47100 * 185.00294 * 18 17 16 38 38 H 1.09001 * 109.47572 * 305.00496 * 18 17 16 39 39 H 1.08993 * 117.49708 * 0.02562 * 22 20 19 40 40 H 1.08996 * 117.49616 * 144.99741 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8443 -6.3430 -0.0018 14 6 2.3305 -7.7150 -0.0030 15 6 3.5027 -8.6985 -0.0029 16 7 2.9875 -10.0741 -0.0034 17 6 4.0873 -11.0480 -0.0039 18 6 3.5127 -12.4661 -0.0039 19 8 2.8058 -12.6936 -1.2248 20 6 2.2271 -13.9962 -1.3272 21 1 2.4545 -14.6775 -0.5073 22 6 2.0845 -14.5978 -2.7268 23 6 0.8452 -14.1064 -1.9747 24 9 -0.0297 -15.0741 -1.4693 25 9 0.2447 -12.9241 -2.4206 26 1 -0.4850 0.8401 -0.0004 27 1 3.1245 -3.7312 0.8895 28 1 3.1245 -3.7313 -0.8905 29 1 3.8010 -6.1834 -0.0015 30 1 1.7222 -7.8744 -0.8933 31 1 1.7217 -7.8758 0.8867 32 1 4.1118 -8.5378 -0.8924 33 1 4.1106 -8.5389 0.8876 34 1 2.3683 -10.2281 -0.7851 35 1 4.6999 -10.9039 -0.8939 36 1 4.6999 -10.9047 0.8861 37 1 4.3252 -13.1873 0.0854 38 1 2.8302 -12.5816 0.8381 39 1 2.4325 -14.0002 -3.5693 40 1 2.2182 -15.6748 -2.8276 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123791955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:40 Heat of formation + Delta-G solvation = -174.188123 kcal Electronic energy + Delta-G solvation = -23497.508338 eV Core-core repulsion = 19302.532060 eV Total energy + Delta-G solvation = -4194.976278 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.111 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.62836 -48.35032 -40.63833 -39.60468 -37.71686 -35.93493 -34.92444 -34.58193 -31.91630 -30.27132 -27.80951 -27.33300 -23.67840 -23.30387 -23.23419 -22.96438 -21.77556 -19.84619 -19.15710 -18.27102 -17.83427 -17.47769 -17.32584 -17.03200 -16.90325 -16.87319 -16.54861 -16.18605 -15.76148 -15.50977 -15.03218 -14.91595 -14.82836 -14.63755 -14.61661 -14.29990 -14.27403 -13.73569 -13.47539 -13.20354 -13.16408 -12.89023 -12.72906 -12.62299 -12.57660 -12.28402 -12.13481 -11.72492 -11.33855 -11.14083 -11.00461 -10.33028 -10.27309 -10.15754 -9.46130 -8.67216 -8.34259 -6.12884 1.26497 1.43127 1.47020 1.57555 1.59843 1.90065 2.17457 2.19179 2.28005 2.33113 2.99864 3.23006 3.35068 3.37897 3.60812 3.71261 3.84126 4.00711 4.08436 4.09747 4.24009 4.31041 4.35892 4.47267 4.50630 4.50855 4.60912 4.78488 4.82413 4.84153 4.91744 4.96769 5.38530 5.42150 5.91975 6.02571 6.20153 6.29643 6.49540 7.06796 7.23619 8.75045 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.028314 B = 0.001615 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.673804 B =17329.460966 C =18019.881220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.156 6.156 10 C -0.128 4.128 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.124 3.876 15 C 0.063 3.937 16 N -0.699 5.699 17 C 0.062 3.938 18 C 0.056 3.944 19 O -0.365 6.365 20 C 0.038 3.962 21 H 0.164 0.836 22 C -0.151 4.151 23 C 0.140 3.860 24 F -0.173 7.173 25 F -0.179 7.179 26 H 0.271 0.729 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.418 0.582 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.346 0.654 35 H 0.044 0.956 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.130 0.870 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.742 -33.104 -2.036 36.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.279 4.279 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.365 5.365 14 C -0.001 4.001 15 C -0.066 4.066 16 N -0.331 5.331 17 C -0.067 4.067 18 C -0.019 4.019 19 O -0.283 6.283 20 C -0.022 4.022 21 H 0.181 0.819 22 C -0.188 4.188 23 C 0.103 3.897 24 F -0.153 7.153 25 F -0.159 7.159 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.256 0.744 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.164 0.836 35 H 0.063 0.937 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.148 0.852 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 13.490 -33.239 -1.480 35.903 hybrid contribution 1.413 1.411 -0.820 2.158 sum 14.902 -31.828 -2.299 35.219 Atomic orbital electron populations 1.70190 1.08038 1.28615 1.48000 1.26158 0.95977 1.03411 0.93728 0.84927 0.78195 0.75890 0.78785 1.19313 1.20342 1.18077 1.23213 0.95401 0.91895 1.58884 0.89738 1.85638 1.10752 0.99409 1.97068 1.23363 1.03498 0.94039 1.07010 1.20119 0.86198 0.86799 0.75091 1.90702 1.17624 1.86145 1.50143 1.45584 1.10410 1.04905 1.75603 1.21201 0.97239 0.80065 1.01577 1.21964 0.94824 0.87242 1.02607 1.60389 1.19635 1.02183 1.50919 1.22099 0.92511 0.89409 1.02648 1.22977 0.96367 0.97148 0.85442 1.87872 1.70131 1.29933 1.40332 1.24285 0.89955 0.88132 0.99814 0.81872 1.24983 0.91233 1.05640 0.96958 1.21519 0.82636 0.78589 1.06909 1.93004 1.72419 1.61865 1.88060 1.92995 1.85972 1.47001 1.89962 0.92005 0.86921 0.86994 0.74446 0.93179 0.92390 0.93124 0.88676 0.83647 0.93730 0.87417 0.88950 0.91780 0.85159 0.82189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 2 C 0.01 0.68 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.55 -31.39 9.50 67.95 0.65 -30.74 16 8 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 9 S -0.16 -8.79 20.57 -56.49 -1.16 -9.95 16 10 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 11 C 0.53 20.13 7.85 87.66 0.69 20.82 16 12 O -0.57 -27.46 15.86 -3.03 -0.05 -27.50 16 13 N -0.71 -18.01 5.56 -463.06 -2.57 -20.58 16 14 C 0.12 2.90 5.93 86.38 0.51 3.42 16 15 C 0.06 0.93 5.80 86.31 0.50 1.43 16 16 N -0.70 -10.63 6.50 -513.89 -3.34 -13.98 16 17 C 0.06 0.58 6.11 86.30 0.53 1.10 16 18 C 0.06 0.45 6.15 71.98 0.44 0.89 16 19 O -0.36 -4.59 10.00 -148.98 -1.49 -6.08 16 20 C 0.04 0.34 6.43 30.60 0.20 0.54 16 21 H 0.16 0.43 7.93 -2.39 -0.02 0.41 16 22 C -0.15 -1.00 10.45 30.62 0.32 -0.68 16 23 C 0.14 2.14 5.26 30.62 0.16 2.31 16 24 F -0.17 -3.01 17.60 44.97 0.79 -2.22 16 25 F -0.18 -4.10 17.47 44.97 0.79 -3.31 16 26 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 27 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 28 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 29 H 0.42 7.19 8.47 -92.71 -0.79 6.41 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.35 6.20 8.29 -89.69 -0.74 5.46 16 35 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.16 0.08 8.14 -2.39 -0.02 0.06 16 Total: -1.00 -83.04 371.29 -0.28 -83.32 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -0.45 Total: 15.29 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 4.90 Total: -4.43 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -5.63 Total: -90.90 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.54 Total: -33.58 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 1.58 Total: -5.53 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -83.04 -0.28 -83.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123791955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.864 kcal (2) G-P(sol) polarization free energy of solvation -83.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds