Wall clock time and date at job start Tue Mar 31 2020 13:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31483 * 119.81838 * 2 1 4 4 C 1.32742 * 121.73283 * 179.97438 * 3 2 1 5 5 N 1.38362 * 119.43130 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00015 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47278 * 179.97438 * 6 5 4 8 8 C 1.36123 * 119.77425 * 260.00395 * 7 6 5 9 9 C 1.38811 * 120.59387 * 179.97438 * 8 7 6 10 10 C 1.37505 * 120.18936 * 0.02562 * 9 8 7 11 11 C 1.39820 * 120.17182 * 359.97438 * 10 9 8 12 12 S 1.75903 * 130.56371 * 179.97438 * 11 10 9 13 13 C 1.75295 * 92.19425 * 180.02562 * 12 11 10 14 14 C 1.31811 * 111.41072 * 359.97438 * 13 12 11 15 15 C 1.39776 * 119.76026 * 0.26632 * 11 10 9 16 16 C 1.39710 * 121.13625 * 0.25214 * 4 3 2 17 17 C 1.36561 * 119.49379 * 359.49133 * 16 4 3 18 18 C 1.40752 * 119.81218 * 179.97438 * 2 1 3 19 19 C 1.41201 * 120.57220 * 0.04574 * 18 2 1 20 20 H 1.08002 * 120.00142 * 24.88785 * 19 18 2 21 21 C 1.39874 * 120.00034 * 204.88142 * 19 18 2 22 22 N 1.30898 * 120.00198 * 14.67696 * 21 19 18 23 23 Si 1.86802 * 120.00028 * 194.68127 * 21 19 18 24 24 H 1.48499 * 109.47458 * 59.99760 * 23 21 19 25 25 H 1.48497 * 109.47194 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46764 * 300.00021 * 23 21 19 27 27 H 1.09004 * 109.46675 * 89.99830 * 1 2 3 28 28 H 1.09003 * 109.47310 * 210.00064 * 1 2 3 29 29 H 1.08991 * 109.46765 * 330.00290 * 1 2 3 30 30 H 0.96995 * 120.00210 * 0.02562 * 5 4 3 31 31 H 1.09000 * 109.46660 * 60.00296 * 6 5 4 32 32 H 1.09001 * 109.47490 * 299.99904 * 6 5 4 33 33 H 1.08000 * 119.70558 * 359.95361 * 8 7 6 34 34 H 1.07995 * 119.90589 * 180.02562 * 9 8 7 35 35 H 1.07997 * 119.91416 * 180.02562 * 10 9 8 36 36 H 1.08004 * 124.29251 * 180.02562 * 13 12 11 37 37 H 1.08000 * 122.55589 * 179.97438 * 14 13 12 38 38 H 1.07997 * 120.25108 * 179.71939 * 16 4 3 39 39 H 1.08001 * 120.79695 * 180.24535 * 17 16 4 40 40 H 0.96995 * 120.00277 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1609 1.1408 0.0000 4 6 3.4875 1.1851 0.0005 5 7 4.1268 2.4122 -0.0001 6 6 5.5904 2.4757 0.0011 7 6 6.0308 3.9169 -0.0005 8 6 6.4254 4.5019 -1.1645 9 6 6.8338 5.8284 -1.1856 10 6 6.8441 6.5672 -0.0259 11 6 6.4429 5.9864 1.1809 12 16 6.3498 6.6642 2.8015 13 6 5.7645 5.1541 3.4723 14 6 5.6527 4.2261 2.5430 15 6 6.0360 4.6494 1.2060 16 6 4.2495 0.0141 -0.0042 17 6 3.6199 -1.1977 0.0011 18 6 2.2068 -1.2212 0.0005 19 6 1.5090 -2.4488 0.0001 20 1 0.5048 -2.4990 -0.3942 21 6 2.1184 -3.5998 0.5103 22 7 3.1999 -3.4989 1.2408 23 14 1.3889 -5.2812 0.1490 24 1 1.3680 -5.5068 -1.3186 25 1 2.2152 -6.3295 0.7997 26 1 0.0032 -5.3437 0.6793 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 3.6059 3.2304 -0.0004 31 1 5.9763 1.9773 -0.8882 32 1 5.9751 1.9789 0.8918 33 1 6.4210 3.9288 -2.0799 34 1 7.1442 6.2815 -2.1154 35 1 7.1623 7.5990 -0.0475 36 1 5.5251 5.0036 4.5147 37 1 5.3076 3.2258 2.7592 38 1 5.3282 0.0668 -0.0083 39 1 4.1882 -2.1161 0.0016 40 1 3.6223 -4.2971 1.5948 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160186787.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:53 Heat of formation + Delta-G solvation = 73.260051 kcal Electronic energy + Delta-G solvation = -23336.185042 eV Core-core repulsion = 20013.477372 eV Total energy + Delta-G solvation = -3322.707671 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.93565 -38.58249 -35.58074 -35.24720 -33.70271 -31.87265 -30.85950 -29.85295 -29.30928 -26.87238 -25.71056 -24.01294 -23.87192 -21.91024 -21.19228 -20.62917 -19.89655 -17.78838 -17.20179 -16.48804 -16.12039 -15.55227 -15.32100 -15.11300 -14.87328 -13.98727 -13.91694 -13.64066 -13.55939 -13.49182 -13.05418 -12.69983 -12.57862 -12.25904 -11.88989 -11.80573 -11.58740 -11.44165 -11.37010 -11.22842 -11.12942 -11.03102 -10.81461 -10.72273 -10.53829 -9.77911 -9.60365 -9.35874 -8.67027 -8.61437 -8.12963 -7.97591 -7.83680 -6.78713 -6.56437 -4.16728 0.58658 1.05878 1.40894 1.85877 2.21110 2.75803 3.00038 3.08740 3.11890 3.31467 3.48006 3.96845 4.32279 4.48932 4.61439 4.71672 4.76945 5.02222 5.12933 5.21424 5.45912 5.62056 5.68768 5.70090 5.82201 5.88774 5.97333 6.04681 6.17171 6.26242 6.40944 6.49998 6.52466 6.56332 6.69978 6.70722 6.82531 7.07288 7.24436 7.41106 7.49292 7.77751 7.92719 8.28153 8.46090 8.67627 8.87321 8.94720 9.76220 10.26310 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022150 B = 0.002597 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.832244 B =10778.634715 C =10951.219192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.037 3.963 3 N -0.521 5.521 4 C 0.285 3.715 5 N -0.739 5.739 6 C 0.182 3.818 7 C -0.052 4.052 8 C -0.102 4.102 9 C -0.103 4.103 10 C -0.085 4.085 11 C -0.139 4.139 12 S 0.066 5.934 13 C -0.193 4.193 14 C -0.106 4.106 15 C -0.060 4.060 16 C -0.209 4.209 17 C -0.091 4.091 18 C 0.033 3.967 19 C -0.452 4.452 20 H 0.079 0.921 21 C 0.072 3.928 22 N -0.808 5.808 23 Si 0.908 3.092 24 H -0.265 1.265 25 H -0.280 1.280 26 H -0.266 1.266 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.390 0.610 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.167 0.833 37 H 0.150 0.850 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.533 14.764 0.030 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 N -0.237 5.237 4 C 0.053 3.947 5 N -0.378 5.378 6 C 0.057 3.943 7 C -0.054 4.054 8 C -0.123 4.123 9 C -0.124 4.124 10 C -0.108 4.108 11 C -0.254 4.254 12 S 0.329 5.671 13 C -0.326 4.326 14 C -0.135 4.135 15 C -0.068 4.068 16 C -0.233 4.233 17 C -0.118 4.118 18 C 0.028 3.972 19 C -0.484 4.484 20 H 0.097 0.903 21 C -0.143 4.143 22 N -0.435 5.435 23 Si 0.733 3.267 24 H -0.190 1.190 25 H -0.205 1.205 26 H -0.191 1.191 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.223 0.777 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.185 0.815 37 H 0.167 0.833 38 H 0.114 0.886 39 H 0.147 0.853 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.674 16.644 0.903 18.791 hybrid contribution -0.156 -2.663 -0.538 2.721 sum 8.517 13.981 0.365 16.376 Atomic orbital electron populations 1.20253 0.91265 1.01060 1.00224 1.20728 0.94645 0.87388 1.07384 1.66296 1.07356 1.31269 1.18742 1.17659 0.88220 0.84787 1.04061 1.43549 1.02740 1.05054 1.86501 1.19916 0.82448 0.90542 1.01417 1.19638 0.98466 0.95888 0.91428 1.20703 0.98841 0.95156 0.97623 1.21039 0.99515 0.94184 0.97650 1.20456 1.00376 0.99688 0.90232 1.22688 1.07223 0.97409 0.98087 1.84008 1.70798 1.14110 0.98178 1.25014 1.07589 0.96326 1.03670 1.21086 1.00847 1.01180 0.90409 1.19180 1.01398 0.92442 0.93795 1.20797 0.98128 0.92902 1.11516 1.21335 0.94906 0.96243 0.99268 1.18159 0.92226 0.93040 0.93817 1.19320 1.01344 0.91976 1.35728 0.90296 1.25855 0.94494 1.01177 0.92790 1.69792 1.17804 1.31323 1.24623 0.86377 0.79781 0.80889 0.79695 1.19004 1.20522 1.19088 0.93446 0.91360 0.93458 0.77683 0.92130 0.92213 0.85107 0.85142 0.85683 0.81521 0.83259 0.88591 0.85304 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 9.58 36.01 0.34 -1.16 16 2 C 0.04 0.93 6.86 -81.79 -0.56 0.37 16 3 N -0.52 -12.76 10.29 -8.05 -0.08 -12.84 16 4 C 0.29 6.46 7.64 -155.13 -1.19 5.27 16 5 N -0.74 -13.48 5.70 -61.53 -0.35 -13.83 16 6 C 0.18 2.72 4.72 -5.19 -0.02 2.70 16 7 C -0.05 -0.68 5.27 -104.28 -0.55 -1.23 16 8 C -0.10 -1.16 9.55 -40.13 -0.38 -1.54 16 9 C -0.10 -1.01 10.03 -39.64 -0.40 -1.40 16 10 C -0.08 -0.88 10.07 -39.26 -0.40 -1.27 16 11 C -0.14 -1.69 6.48 -38.42 -0.25 -1.94 16 12 S 0.07 0.71 23.23 -107.50 -2.50 -1.79 16 13 C -0.19 -2.16 11.02 28.84 0.32 -1.84 16 14 C -0.11 -1.37 9.86 -38.63 -0.38 -1.75 16 15 C -0.06 -0.80 5.98 -105.38 -0.63 -1.43 16 16 C -0.21 -4.84 9.24 -39.64 -0.37 -5.21 16 17 C -0.09 -2.33 8.73 -39.01 -0.34 -2.67 16 18 C 0.03 0.86 5.59 -106.65 -0.60 0.27 16 19 C -0.45 -11.73 8.16 -37.85 -0.31 -12.04 16 20 H 0.08 1.95 6.84 -52.49 -0.36 1.59 16 21 C 0.07 1.79 5.22 -17.34 -0.09 1.70 16 22 N -0.81 -20.67 10.83 55.54 0.60 -20.06 16 23 Si 0.91 18.57 29.58 -169.99 -5.03 13.54 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.44 6.75 -51.93 -0.35 1.09 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.39 7.03 8.58 -40.82 -0.35 6.68 16 31 H 0.06 0.88 7.71 -51.93 -0.40 0.48 16 32 H 0.06 0.91 7.56 -51.93 -0.39 0.52 16 33 H 0.13 1.29 7.99 -52.49 -0.42 0.87 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.17 1.48 8.06 -52.48 -0.42 1.05 16 37 H 0.15 2.01 7.85 -52.49 -0.41 1.60 16 38 H 0.10 1.96 6.64 -52.49 -0.35 1.61 16 39 H 0.13 3.38 6.17 -52.49 -0.32 3.06 16 40 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -28.72 349.79 -12.49 -41.20 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -4.60 Total: 11.68 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -5.80 Total: -23.17 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.17 Total: -46.73 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.50 Total: -1.79 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.72 -12.49 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160186787.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.464 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds