Wall clock time and date at job start Tue Mar 31 2020 13:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31483 * 119.81838 * 2 1 4 4 C 1.32742 * 121.73283 * 179.97438 * 3 2 1 5 5 N 1.38362 * 119.43130 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00015 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47278 * 179.97438 * 6 5 4 8 8 C 1.36123 * 119.77425 * 260.00395 * 7 6 5 9 9 C 1.38811 * 120.59387 * 179.97438 * 8 7 6 10 10 C 1.37505 * 120.18936 * 0.02562 * 9 8 7 11 11 C 1.39820 * 120.17182 * 359.97438 * 10 9 8 12 12 S 1.75903 * 130.56371 * 179.97438 * 11 10 9 13 13 C 1.75295 * 92.19425 * 180.02562 * 12 11 10 14 14 C 1.31811 * 111.41072 * 359.97438 * 13 12 11 15 15 C 1.39776 * 119.76026 * 0.26632 * 11 10 9 16 16 C 1.39710 * 121.13625 * 0.25214 * 4 3 2 17 17 C 1.36561 * 119.49379 * 359.49133 * 16 4 3 18 18 C 1.40752 * 119.81218 * 179.97438 * 2 1 3 19 19 C 1.41201 * 120.57220 * 0.04574 * 18 2 1 20 20 H 1.08002 * 120.00142 * 24.88785 * 19 18 2 21 21 C 1.39874 * 120.00034 * 204.88142 * 19 18 2 22 22 N 1.30898 * 120.00198 * 14.67696 * 21 19 18 23 23 Si 1.86802 * 120.00028 * 194.68127 * 21 19 18 24 24 H 1.48499 * 109.47458 * 59.99760 * 23 21 19 25 25 H 1.48497 * 109.47194 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46764 * 300.00021 * 23 21 19 27 27 H 1.09004 * 109.46675 * 89.99830 * 1 2 3 28 28 H 1.09003 * 109.47310 * 210.00064 * 1 2 3 29 29 H 1.08991 * 109.46765 * 330.00290 * 1 2 3 30 30 H 0.96995 * 120.00210 * 0.02562 * 5 4 3 31 31 H 1.09000 * 109.46660 * 60.00296 * 6 5 4 32 32 H 1.09001 * 109.47490 * 299.99904 * 6 5 4 33 33 H 1.08000 * 119.70558 * 359.95361 * 8 7 6 34 34 H 1.07995 * 119.90589 * 180.02562 * 9 8 7 35 35 H 1.07997 * 119.91416 * 180.02562 * 10 9 8 36 36 H 1.08004 * 124.29251 * 180.02562 * 13 12 11 37 37 H 1.08000 * 122.55589 * 179.97438 * 14 13 12 38 38 H 1.07997 * 120.25108 * 179.71939 * 16 4 3 39 39 H 1.08001 * 120.79695 * 180.24535 * 17 16 4 40 40 H 0.96995 * 120.00277 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1609 1.1408 0.0000 4 6 3.4875 1.1851 0.0005 5 7 4.1268 2.4122 -0.0001 6 6 5.5904 2.4757 0.0011 7 6 6.0308 3.9169 -0.0005 8 6 6.4254 4.5019 -1.1645 9 6 6.8338 5.8284 -1.1856 10 6 6.8441 6.5672 -0.0259 11 6 6.4429 5.9864 1.1809 12 16 6.3498 6.6642 2.8015 13 6 5.7645 5.1541 3.4723 14 6 5.6527 4.2261 2.5430 15 6 6.0360 4.6494 1.2060 16 6 4.2495 0.0141 -0.0042 17 6 3.6199 -1.1977 0.0011 18 6 2.2068 -1.2212 0.0005 19 6 1.5090 -2.4488 0.0001 20 1 0.5048 -2.4990 -0.3942 21 6 2.1184 -3.5998 0.5103 22 7 3.1999 -3.4989 1.2408 23 14 1.3889 -5.2812 0.1490 24 1 1.3680 -5.5068 -1.3186 25 1 2.2152 -6.3295 0.7997 26 1 0.0032 -5.3437 0.6793 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 3.6059 3.2304 -0.0004 31 1 5.9763 1.9773 -0.8882 32 1 5.9751 1.9789 0.8918 33 1 6.4210 3.9288 -2.0799 34 1 7.1442 6.2815 -2.1154 35 1 7.1623 7.5990 -0.0475 36 1 5.5251 5.0036 4.5147 37 1 5.3076 3.2258 2.7592 38 1 5.3282 0.0668 -0.0083 39 1 4.1882 -2.1161 0.0016 40 1 3.6223 -4.2971 1.5948 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160186787.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:53 Heat of formation + Delta-G solvation = 59.971650 kcal Electronic energy + Delta-G solvation = -23336.761271 eV Core-core repulsion = 20013.477372 eV Total energy + Delta-G solvation = -3323.283899 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92795 -40.32382 -37.07083 -36.16992 -35.45258 -33.30494 -32.64204 -31.27249 -30.30409 -28.68864 -27.03428 -25.73175 -24.74894 -23.12971 -22.89166 -21.71703 -21.38514 -19.09274 -18.83931 -17.93274 -17.14129 -16.97597 -16.72266 -16.39771 -15.90789 -15.42321 -15.29033 -15.19949 -14.78469 -14.66626 -14.43602 -14.14268 -13.76882 -13.57372 -13.44353 -13.33740 -13.16926 -12.90495 -12.78320 -12.66328 -12.58442 -12.27732 -12.19401 -12.02954 -11.63173 -11.54736 -11.16629 -10.60756 -10.36530 -9.99855 -9.87597 -9.52233 -8.69597 -8.61740 -8.36044 -6.08252 -0.29997 0.17076 0.55966 0.90281 0.96634 1.15866 1.30618 1.42649 1.52908 1.59900 2.26150 2.45844 2.85559 2.97712 3.54417 3.72423 3.77413 3.94777 4.10549 4.18349 4.29974 4.36152 4.49700 4.58644 4.61957 4.70620 4.77483 4.79747 4.86700 4.96229 5.01207 5.04622 5.07646 5.22857 5.30752 5.38887 5.41300 5.55971 5.57424 5.67511 5.86559 5.91664 6.03275 6.51363 6.63880 6.86904 6.97696 7.14493 7.89322 8.43931 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022150 B = 0.002597 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.832244 B =10778.634715 C =10951.219192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.022 3.978 3 N -0.538 5.538 4 C 0.291 3.709 5 N -0.727 5.727 6 C 0.185 3.815 7 C -0.072 4.072 8 C -0.101 4.101 9 C -0.099 4.099 10 C -0.083 4.083 11 C -0.160 4.160 12 S 0.097 5.903 13 C -0.190 4.190 14 C -0.133 4.133 15 C -0.078 4.078 16 C -0.215 4.215 17 C -0.108 4.108 18 C -0.002 4.002 19 C -0.481 4.481 20 H 0.082 0.918 21 C 0.031 3.969 22 N -0.841 5.841 23 Si 0.980 3.020 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.260 1.260 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.392 0.608 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.144 0.856 34 H 0.165 0.835 35 H 0.152 0.848 36 H 0.187 0.813 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.057 16.341 -0.654 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 N -0.255 5.255 4 C 0.057 3.943 5 N -0.366 5.366 6 C 0.061 3.939 7 C -0.074 4.074 8 C -0.122 4.122 9 C -0.119 4.119 10 C -0.105 4.105 11 C -0.275 4.275 12 S 0.360 5.640 13 C -0.323 4.323 14 C -0.163 4.163 15 C -0.087 4.087 16 C -0.239 4.239 17 C -0.135 4.135 18 C -0.007 4.007 19 C -0.512 4.512 20 H 0.100 0.900 21 C -0.181 4.181 22 N -0.469 5.469 23 Si 0.801 3.199 24 H -0.187 1.187 25 H -0.198 1.198 26 H -0.184 1.184 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.226 0.774 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.161 0.839 34 H 0.182 0.818 35 H 0.170 0.830 36 H 0.204 0.796 37 H 0.152 0.848 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.218 18.264 0.220 20.459 hybrid contribution -0.206 -2.934 -0.304 2.957 sum 9.012 15.329 -0.084 17.782 Atomic orbital electron populations 1.20237 0.89117 1.01496 1.01282 1.21270 0.96398 0.87254 1.06704 1.66438 1.08130 1.31043 1.19854 1.17995 0.88032 0.86248 1.02010 1.43664 1.04198 1.03538 1.85170 1.19980 0.80199 0.92517 1.01252 1.19489 1.00674 0.94829 0.92436 1.20961 0.97836 0.96101 0.97295 1.21414 0.98276 0.93338 0.98890 1.20873 0.99077 1.00948 0.89625 1.23005 1.07751 0.97228 0.99515 1.83847 1.70052 1.12957 0.97128 1.25333 1.06109 0.96432 1.04438 1.21071 1.02830 1.01117 0.91236 1.19305 1.02191 0.93325 0.93836 1.20970 0.99337 0.92368 1.11249 1.21357 0.95078 0.96669 1.00420 1.18499 0.92835 0.94051 0.95307 1.19547 1.01879 0.92750 1.37010 0.89968 1.26680 0.94778 1.04645 0.92029 1.69861 1.19066 1.32551 1.25381 0.85282 0.79117 0.76013 0.79473 1.18655 1.19774 1.18393 0.91961 0.91509 0.92293 0.77430 0.91424 0.92960 0.83852 0.81763 0.83038 0.79583 0.84842 0.86387 0.86612 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.73 9.58 71.24 0.68 -2.05 16 2 C 0.02 1.12 6.86 43.23 0.30 1.41 16 3 N -0.54 -26.60 10.29 -179.37 -1.85 -28.45 16 4 C 0.29 13.33 7.64 133.32 1.02 14.34 16 5 N -0.73 -26.54 5.70 -348.59 -1.99 -28.52 16 6 C 0.18 5.50 4.72 85.63 0.40 5.91 16 7 C -0.07 -1.84 5.27 -19.64 -0.10 -1.94 16 8 C -0.10 -2.08 9.55 21.91 0.21 -1.87 16 9 C -0.10 -1.60 10.03 22.23 0.22 -1.38 16 10 C -0.08 -1.47 10.07 22.48 0.23 -1.24 16 11 C -0.16 -3.61 6.48 23.02 0.15 -3.46 16 12 S 0.10 1.91 23.23 -56.49 -1.31 0.60 16 13 C -0.19 -4.11 11.02 67.05 0.74 -3.37 16 14 C -0.13 -3.48 9.86 23.34 0.23 -3.25 16 15 C -0.08 -2.04 5.98 -20.35 -0.12 -2.16 16 16 C -0.22 -10.15 9.24 22.23 0.21 -9.94 16 17 C -0.11 -5.76 8.73 22.64 0.20 -5.56 16 18 C 0.00 -0.10 5.59 -21.18 -0.12 -0.22 16 19 C -0.48 -25.51 8.16 23.39 0.19 -25.32 16 20 H 0.08 4.14 6.84 -2.91 -0.02 4.12 16 21 C 0.03 1.56 5.22 85.23 0.45 2.01 16 22 N -0.84 -44.09 10.83 21.82 0.24 -43.85 16 23 Si 0.98 38.28 29.58 68.60 2.03 40.31 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 25 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 27 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.07 2.84 6.75 -2.39 -0.02 2.82 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.39 14.08 8.58 -92.71 -0.80 13.28 16 31 H 0.07 1.92 7.71 -2.39 -0.02 1.90 16 32 H 0.05 1.64 7.56 -2.39 -0.02 1.62 16 33 H 0.14 2.50 7.99 -2.91 -0.02 2.48 16 34 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 35 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.19 3.09 8.06 -2.91 -0.02 3.06 16 37 H 0.13 3.80 7.85 -2.91 -0.02 3.78 16 38 H 0.12 4.88 6.64 -2.91 -0.02 4.87 16 39 H 0.12 6.35 6.17 -2.91 -0.02 6.33 16 40 H 0.28 13.62 8.30 -92.71 -0.77 12.85 16 Total: -1.00 -63.07 349.79 2.29 -60.78 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: 0.29 Total: 37.23 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 4.87 Total: -38.09 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -3.59 Total: -100.83 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.31 Total: 0.60 kcal Total: -63.07 2.29 -60.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160186787.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.755 kcal (2) G-P(sol) polarization free energy of solvation -63.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds