Wall clock time and date at job start Tue Mar 31 2020 13:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38681 * 119.27990 * 2 1 4 4 C 1.38010 * 119.62770 * 179.97438 * 3 2 1 5 5 C 1.41001 * 118.28299 * 359.74783 * 4 3 2 6 6 C 1.41014 * 120.70770 * 180.24447 * 5 4 3 7 7 H 1.08000 * 120.00022 * 154.91611 * 6 5 4 8 8 C 1.39943 * 120.00075 * 334.92086 * 6 5 4 9 9 N 1.30866 * 119.99950 * 343.58210 * 8 6 5 10 10 Si 1.86807 * 120.00103 * 163.58518 * 8 6 5 11 11 H 1.48504 * 109.47075 * 89.99796 * 10 8 6 12 12 H 1.48496 * 109.47185 * 209.99793 * 10 8 6 13 13 H 1.48496 * 109.46998 * 329.99795 * 10 8 6 14 14 C 1.41711 * 118.58520 * 0.48809 * 5 4 3 15 15 N 1.38095 * 119.90326 * 179.77529 * 14 5 4 16 16 C 1.46503 * 119.99802 * 179.72292 * 15 14 5 17 17 C 1.50699 * 109.46756 * 180.02562 * 16 15 14 18 18 C 1.36134 * 119.77291 * 259.99828 * 17 16 15 19 19 C 1.38804 * 120.59250 * 179.97438 * 18 17 16 20 20 C 1.37507 * 120.18580 * 0.02775 * 19 18 17 21 21 C 1.39810 * 120.18042 * 359.97379 * 20 19 18 22 22 S 1.75893 * 130.56774 * 179.97438 * 21 20 19 23 23 C 1.75301 * 92.19583 * 180.02562 * 22 21 20 24 24 C 1.31815 * 111.40627 * 0.02562 * 23 22 21 25 25 C 1.39782 * 119.75191 * 0.27275 * 21 20 19 26 26 N 1.31970 * 119.27677 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46969 * 270.03011 * 1 2 3 28 28 H 1.09003 * 109.46798 * 30.02000 * 1 2 3 29 29 H 1.08996 * 109.47712 * 150.02286 * 1 2 3 30 30 H 1.08004 * 120.18606 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.85689 * 180.02562 * 4 3 2 32 32 H 0.97005 * 119.99973 * 180.02562 * 9 8 6 33 33 H 0.96998 * 119.99731 * 359.72549 * 15 14 5 34 34 H 1.09000 * 109.46700 * 60.00625 * 16 15 14 35 35 H 1.08993 * 109.47269 * 300.00281 * 16 15 14 36 36 H 1.08004 * 119.70248 * 359.96344 * 18 17 16 37 37 H 1.07998 * 119.90453 * 180.02562 * 19 18 17 38 38 H 1.08007 * 119.90719 * 179.97438 * 20 19 18 39 39 H 1.08002 * 124.29264 * 180.02562 * 23 22 21 40 40 H 1.08002 * 122.54978 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5653 1.2180 0.0005 5 6 4.2409 -0.0196 0.0065 6 6 5.6501 -0.0707 0.0125 7 1 6.1574 -0.9357 0.4134 8 6 6.3913 0.9996 -0.5008 9 7 5.8121 1.8891 -1.2663 10 14 8.2075 1.1585 -0.0936 11 1 9.0088 0.4373 -1.1150 12 1 8.5897 2.5935 -0.0873 13 1 8.4678 0.5711 1.2452 14 6 3.4736 -1.2110 0.0011 15 7 4.1073 -2.4380 0.0021 16 6 3.3161 -3.6710 0.0026 17 6 4.2407 -4.8610 0.0043 18 6 4.4941 -5.5218 -1.1586 19 6 5.3433 -6.6196 -1.1767 20 6 5.9387 -7.0523 -0.0153 21 6 5.6925 -6.3886 1.1904 22 16 6.2967 -6.7013 2.8124 23 6 5.3978 -5.3525 3.4801 24 6 4.7048 -4.7281 2.5488 25 6 4.8337 -5.2860 1.2123 26 7 2.1523 -1.1511 0.0005 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5134 30 1 1.6365 2.1399 -0.0004 31 1 4.1136 2.1485 0.0010 32 1 6.3259 2.6308 -1.6224 33 1 5.0762 -2.4834 0.0024 34 1 2.6878 -3.6998 -0.8876 35 1 2.6871 -3.6987 0.8923 36 1 4.0301 -5.1889 -2.0754 37 1 5.5369 -7.1353 -2.1057 38 1 6.5984 -7.9073 -0.0345 39 1 5.4104 -5.0691 4.5222 40 1 4.0852 -3.8698 2.7628 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160187368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:57 Heat of formation + Delta-G solvation = 70.243155 kcal Electronic energy + Delta-G solvation = -23858.275445 eV Core-core repulsion = 20535.436952 eV Total energy + Delta-G solvation = -3322.838493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.77021 -38.51537 -35.26087 -34.97211 -34.10530 -31.83260 -30.64449 -29.57577 -29.05671 -27.66916 -25.42008 -23.72825 -23.71496 -21.76645 -20.73253 -20.62174 -20.34020 -17.64288 -17.21946 -16.22359 -15.89858 -15.54928 -15.40722 -15.03998 -14.62845 -13.85563 -13.83029 -13.73029 -13.43574 -13.38073 -12.78044 -12.60940 -12.53346 -12.32592 -11.91946 -11.74959 -11.62271 -11.44767 -11.39259 -11.25488 -11.18187 -10.91839 -10.81773 -10.60101 -10.48113 -9.78221 -9.55570 -9.25208 -8.86251 -8.51710 -8.07960 -7.87183 -7.68028 -6.80212 -6.48747 -4.20763 0.73027 1.21995 1.53548 1.98097 2.34536 2.72201 3.06192 3.08152 3.12255 3.23224 3.65228 3.92684 4.56416 4.63849 4.68401 4.77266 4.92617 5.18933 5.27664 5.36159 5.60952 5.69922 5.80257 5.84413 5.89489 5.98652 6.14716 6.15274 6.25580 6.31717 6.41043 6.44244 6.46039 6.58304 6.71158 6.81429 6.86052 6.94865 7.13426 7.22717 7.65774 7.79626 8.01950 8.28543 8.52070 8.66653 8.79550 9.00570 9.79205 10.20784 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010207 B = 0.004309 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.559267 B = 6497.180975 C = 7934.366876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.026 3.974 3 C -0.185 4.185 4 C -0.123 4.123 5 C 0.032 3.968 6 C -0.454 4.454 7 H 0.073 0.927 8 C 0.076 3.924 9 N -0.798 5.798 10 Si 0.903 3.097 11 H -0.271 1.271 12 H -0.276 1.276 13 H -0.262 1.262 14 C 0.308 3.692 15 N -0.724 5.724 16 C 0.184 3.816 17 C -0.050 4.050 18 C -0.104 4.104 19 C -0.102 4.102 20 C -0.088 4.088 21 C -0.138 4.138 22 S 0.062 5.938 23 C -0.195 4.195 24 C -0.103 4.103 25 C -0.061 4.061 26 N -0.529 5.529 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.279 0.721 33 H 0.404 0.596 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.166 0.834 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.405 -13.201 3.535 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.150 4.150 5 C 0.025 3.975 6 C -0.486 4.486 7 H 0.091 0.909 8 C -0.140 4.140 9 N -0.424 5.424 10 Si 0.728 3.272 11 H -0.196 1.196 12 H -0.201 1.201 13 H -0.186 1.186 14 C 0.070 3.930 15 N -0.364 5.364 16 C 0.059 3.941 17 C -0.053 4.053 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.253 4.253 22 S 0.324 5.676 23 C -0.328 4.328 24 C -0.132 4.132 25 C -0.069 4.069 26 N -0.247 5.247 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.143 0.857 32 H 0.090 0.910 33 H 0.241 0.759 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.184 0.816 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.746 -14.847 4.124 15.427 hybrid contribution 0.872 2.052 -0.477 2.280 sum 1.618 -12.795 3.648 13.403 Atomic orbital electron populations 1.20281 0.91851 1.00737 1.00257 1.19938 0.94241 0.87986 1.08715 1.21222 0.95351 0.96637 1.07574 1.21331 0.92095 0.98159 1.03366 1.17893 0.93829 0.90040 0.95779 1.19114 0.90774 1.02853 1.35839 0.90854 1.25783 1.00636 0.94892 0.92736 1.69811 1.38370 1.11275 1.22969 0.86390 0.82442 0.78290 0.80103 1.19603 1.20139 1.18577 1.18394 0.87903 0.85353 1.01339 1.43666 1.07390 1.00627 1.84723 1.19807 0.91492 0.81141 1.01687 1.19798 0.97338 0.96860 0.91278 1.20712 0.98432 0.95579 0.97729 1.21033 0.96863 0.96821 0.97545 1.20424 1.00644 0.99729 0.90275 1.22661 1.03521 1.01114 0.97965 1.83950 1.52028 1.33264 0.98355 1.24976 1.03592 1.00671 1.03575 1.21077 1.00826 1.00863 0.90435 1.19183 0.98533 0.95400 0.93829 1.66326 1.08315 1.29859 1.20179 0.93301 0.92941 0.92788 0.88822 0.85746 0.90989 0.75947 0.92179 0.92299 0.85165 0.85248 0.85804 0.81636 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 10.15 36.00 0.37 -0.97 16 2 C 0.03 0.59 6.79 -82.37 -0.56 0.03 16 3 C -0.19 -4.38 9.69 -39.50 -0.38 -4.76 16 4 C -0.12 -3.18 8.79 -38.62 -0.34 -3.52 16 5 C 0.03 0.82 5.59 -106.47 -0.60 0.23 16 6 C -0.45 -11.58 8.51 -37.89 -0.32 -11.90 16 7 H 0.07 1.79 6.70 -52.49 -0.35 1.43 16 8 C 0.08 1.88 5.19 -17.32 -0.09 1.79 16 9 N -0.80 -20.37 10.95 55.55 0.61 -19.76 16 10 Si 0.90 18.55 29.59 -169.99 -5.03 13.52 16 11 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 12 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 13 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 14 C 0.31 7.44 7.52 -155.02 -1.17 6.28 16 15 N -0.72 -14.90 5.60 -61.15 -0.34 -15.25 16 16 C 0.18 3.19 5.53 -5.19 -0.03 3.16 16 17 C -0.05 -0.76 5.27 -104.28 -0.55 -1.31 16 18 C -0.10 -1.38 9.55 -40.13 -0.38 -1.76 16 19 C -0.10 -1.17 10.03 -39.64 -0.40 -1.56 16 20 C -0.09 -1.05 10.07 -39.26 -0.40 -1.44 16 21 C -0.14 -1.88 6.48 -38.42 -0.25 -2.13 16 22 S 0.06 0.74 23.23 -107.50 -2.50 -1.76 16 23 C -0.19 -2.41 11.02 28.84 0.32 -2.09 16 24 C -0.10 -1.47 9.86 -38.63 -0.38 -1.85 16 25 C -0.06 -0.91 5.98 -105.38 -0.63 -1.54 16 26 N -0.53 -12.59 9.44 -8.11 -0.08 -12.66 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.97 8.06 -52.48 -0.42 1.55 16 31 H 0.12 3.30 6.26 -52.49 -0.33 2.97 16 32 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 33 H 0.40 8.34 6.67 -40.82 -0.27 8.07 16 34 H 0.06 1.07 7.96 -51.93 -0.41 0.65 16 35 H 0.06 1.05 7.78 -51.93 -0.40 0.65 16 36 H 0.13 1.57 7.99 -52.48 -0.42 1.15 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.15 2.18 7.85 -52.49 -0.41 1.77 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -28.28 352.26 -12.51 -40.79 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -4.69 Total: 13.18 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -5.79 Total: -23.36 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.19 Total: -47.67 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.50 Total: -1.76 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.28 -12.51 -40.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160187368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.033 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds