Wall clock time and date at job start Tue Mar 31 2020 13:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38681 * 119.27990 * 2 1 4 4 C 1.38010 * 119.62770 * 179.97438 * 3 2 1 5 5 C 1.41001 * 118.28299 * 359.74783 * 4 3 2 6 6 C 1.41014 * 120.70770 * 180.24447 * 5 4 3 7 7 H 1.08000 * 120.00022 * 154.91611 * 6 5 4 8 8 C 1.39943 * 120.00075 * 334.92086 * 6 5 4 9 9 N 1.30866 * 119.99950 * 343.58210 * 8 6 5 10 10 Si 1.86807 * 120.00103 * 163.58518 * 8 6 5 11 11 H 1.48504 * 109.47075 * 89.99796 * 10 8 6 12 12 H 1.48496 * 109.47185 * 209.99793 * 10 8 6 13 13 H 1.48496 * 109.46998 * 329.99795 * 10 8 6 14 14 C 1.41711 * 118.58520 * 0.48809 * 5 4 3 15 15 N 1.38095 * 119.90326 * 179.77529 * 14 5 4 16 16 C 1.46503 * 119.99802 * 179.72292 * 15 14 5 17 17 C 1.50699 * 109.46756 * 180.02562 * 16 15 14 18 18 C 1.36134 * 119.77291 * 259.99828 * 17 16 15 19 19 C 1.38804 * 120.59250 * 179.97438 * 18 17 16 20 20 C 1.37507 * 120.18580 * 0.02775 * 19 18 17 21 21 C 1.39810 * 120.18042 * 359.97379 * 20 19 18 22 22 S 1.75893 * 130.56774 * 179.97438 * 21 20 19 23 23 C 1.75301 * 92.19583 * 180.02562 * 22 21 20 24 24 C 1.31815 * 111.40627 * 0.02562 * 23 22 21 25 25 C 1.39782 * 119.75191 * 0.27275 * 21 20 19 26 26 N 1.31970 * 119.27677 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46969 * 270.03011 * 1 2 3 28 28 H 1.09003 * 109.46798 * 30.02000 * 1 2 3 29 29 H 1.08996 * 109.47712 * 150.02286 * 1 2 3 30 30 H 1.08004 * 120.18606 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.85689 * 180.02562 * 4 3 2 32 32 H 0.97005 * 119.99973 * 180.02562 * 9 8 6 33 33 H 0.96998 * 119.99731 * 359.72549 * 15 14 5 34 34 H 1.09000 * 109.46700 * 60.00625 * 16 15 14 35 35 H 1.08993 * 109.47269 * 300.00281 * 16 15 14 36 36 H 1.08004 * 119.70248 * 359.96344 * 18 17 16 37 37 H 1.07998 * 119.90453 * 180.02562 * 19 18 17 38 38 H 1.08007 * 119.90719 * 179.97438 * 20 19 18 39 39 H 1.08002 * 124.29264 * 180.02562 * 23 22 21 40 40 H 1.08002 * 122.54978 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5653 1.2180 0.0005 5 6 4.2409 -0.0196 0.0065 6 6 5.6501 -0.0707 0.0125 7 1 6.1574 -0.9357 0.4134 8 6 6.3913 0.9996 -0.5008 9 7 5.8121 1.8891 -1.2663 10 14 8.2075 1.1585 -0.0936 11 1 9.0088 0.4373 -1.1150 12 1 8.5897 2.5935 -0.0873 13 1 8.4678 0.5711 1.2452 14 6 3.4736 -1.2110 0.0011 15 7 4.1073 -2.4380 0.0021 16 6 3.3161 -3.6710 0.0026 17 6 4.2407 -4.8610 0.0043 18 6 4.4941 -5.5218 -1.1586 19 6 5.3433 -6.6196 -1.1767 20 6 5.9387 -7.0523 -0.0153 21 6 5.6925 -6.3886 1.1904 22 16 6.2967 -6.7013 2.8124 23 6 5.3978 -5.3525 3.4801 24 6 4.7048 -4.7281 2.5488 25 6 4.8337 -5.2860 1.2123 26 7 2.1523 -1.1511 0.0005 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5134 30 1 1.6365 2.1399 -0.0004 31 1 4.1136 2.1485 0.0010 32 1 6.3259 2.6308 -1.6224 33 1 5.0762 -2.4834 0.0024 34 1 2.6878 -3.6998 -0.8876 35 1 2.6871 -3.6987 0.8923 36 1 4.0301 -5.1889 -2.0754 37 1 5.5369 -7.1353 -2.1057 38 1 6.5984 -7.9073 -0.0345 39 1 5.4104 -5.0691 4.5222 40 1 4.0852 -3.8698 2.7628 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160187368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:56 Heat of formation + Delta-G solvation = 57.744499 kcal Electronic energy + Delta-G solvation = -23858.817428 eV Core-core repulsion = 20535.436952 eV Total energy + Delta-G solvation = -3323.380476 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88782 -40.26123 -36.66829 -36.13231 -35.94207 -33.25012 -32.43531 -30.93555 -30.26291 -29.39920 -26.87547 -25.42926 -24.72758 -23.07286 -22.52767 -22.16671 -21.45076 -19.13822 -18.72074 -17.71647 -17.27883 -17.10315 -16.59312 -16.37329 -15.81674 -15.59333 -15.24215 -15.10430 -14.75214 -14.69663 -14.24251 -14.09677 -13.87197 -13.68160 -13.35304 -13.33447 -13.16495 -12.98004 -12.82884 -12.64438 -12.54098 -12.25986 -12.17600 -12.01003 -11.67805 -11.56872 -11.09007 -10.65973 -10.55210 -9.94861 -9.75892 -9.50225 -8.67255 -8.64387 -8.29361 -6.12271 -0.28106 0.18731 0.57416 0.91517 0.97635 1.22846 1.32413 1.37700 1.46943 1.52429 2.20719 2.52801 2.80687 3.05734 3.58247 3.74521 3.77878 3.96977 4.10787 4.22679 4.32876 4.37745 4.53082 4.54499 4.67415 4.74588 4.81114 4.88084 4.97380 4.98769 5.00806 5.06529 5.07539 5.19240 5.26103 5.31679 5.41503 5.43933 5.61104 5.79712 5.88212 5.90687 6.14609 6.41521 6.76648 6.81595 6.90804 7.15462 7.93871 8.38704 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010207 B = 0.004309 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.559267 B = 6497.180975 C = 7934.366876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.023 3.977 3 C -0.200 4.200 4 C -0.144 4.144 5 C -0.003 4.003 6 C -0.479 4.479 7 H 0.074 0.926 8 C 0.036 3.964 9 N -0.831 5.831 10 Si 0.973 3.027 11 H -0.264 1.264 12 H -0.269 1.269 13 H -0.261 1.261 14 C 0.302 3.698 15 N -0.717 5.717 16 C 0.194 3.806 17 C -0.074 4.074 18 C -0.106 4.106 19 C -0.098 4.098 20 C -0.084 4.084 21 C -0.159 4.159 22 S 0.100 5.900 23 C -0.188 4.188 24 C -0.132 4.132 25 C -0.079 4.079 26 N -0.540 5.540 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.285 0.715 33 H 0.401 0.599 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.138 0.862 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.189 0.811 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.207 -15.074 3.596 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.111 4.111 3 C -0.222 4.222 4 C -0.171 4.171 5 C -0.010 4.010 6 C -0.510 4.510 7 H 0.092 0.908 8 C -0.177 4.177 9 N -0.458 5.458 10 Si 0.795 3.205 11 H -0.189 1.189 12 H -0.193 1.193 13 H -0.185 1.185 14 C 0.064 3.936 15 N -0.355 5.355 16 C 0.070 3.930 17 C -0.076 4.076 18 C -0.126 4.126 19 C -0.119 4.119 20 C -0.106 4.106 21 C -0.274 4.274 22 S 0.363 5.637 23 C -0.322 4.322 24 C -0.162 4.162 25 C -0.087 4.087 26 N -0.259 5.259 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.238 0.762 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.156 0.844 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.207 0.793 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.540 -16.752 4.187 17.336 hybrid contribution 0.538 2.537 -0.474 2.636 sum 2.077 -14.215 3.713 14.838 Atomic orbital electron populations 1.20341 0.88236 1.02171 1.01853 1.20777 0.96715 0.87437 1.06216 1.21477 0.94731 0.98137 1.07884 1.21354 0.93261 0.97686 1.04751 1.18221 0.94657 0.90888 0.97211 1.19293 0.90999 1.03766 1.36959 0.90791 1.26574 1.04884 0.94196 0.92080 1.69874 1.40188 1.11945 1.23813 0.85328 0.76946 0.78499 0.79727 1.18900 1.19338 1.18516 1.18673 0.88269 0.86261 1.00440 1.43764 1.07436 1.00741 1.83600 1.19727 0.91630 0.80922 1.00697 1.19623 0.98590 0.96839 0.92543 1.20932 0.98506 0.95965 0.97230 1.21396 0.95573 0.95932 0.98954 1.20860 1.00220 0.99949 0.89582 1.23003 1.03690 1.01108 0.99635 1.83766 1.50966 1.32136 0.96882 1.25330 1.02190 1.00222 1.04424 1.21049 1.02409 1.01539 0.91161 1.19306 0.99290 0.96309 0.93835 1.66509 1.08038 1.30352 1.20971 0.91487 0.90716 0.92140 0.86547 0.87326 0.90440 0.76240 0.92772 0.93367 0.84449 0.81782 0.82860 0.79342 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.36 10.15 71.23 0.72 -1.63 16 2 C 0.02 1.05 6.79 42.64 0.29 1.34 16 3 C -0.20 -9.56 9.69 22.32 0.22 -9.34 16 4 C -0.14 -7.73 8.79 22.89 0.20 -7.53 16 5 C 0.00 -0.15 5.59 -21.06 -0.12 -0.27 16 6 C -0.48 -25.30 8.51 23.36 0.20 -25.10 16 7 H 0.07 3.75 6.70 -2.91 -0.02 3.73 16 8 C 0.04 1.83 5.19 85.25 0.44 2.27 16 9 N -0.83 -43.68 10.95 21.83 0.24 -43.44 16 10 Si 0.97 38.51 29.59 68.60 2.03 40.54 16 11 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 12 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 13 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 14 C 0.30 15.12 7.52 134.05 1.01 16.12 16 15 N -0.72 -30.69 5.60 -347.38 -1.95 -32.63 16 16 C 0.19 7.00 5.53 85.63 0.47 7.48 16 17 C -0.07 -2.25 5.27 -19.65 -0.10 -2.36 16 18 C -0.11 -2.70 9.55 21.92 0.21 -2.49 16 19 C -0.10 -1.98 10.03 22.23 0.22 -1.76 16 20 C -0.08 -1.76 10.07 22.48 0.23 -1.53 16 21 C -0.16 -4.10 6.48 23.02 0.15 -3.95 16 22 S 0.10 2.18 23.23 -56.49 -1.31 0.87 16 23 C -0.19 -4.48 11.02 67.04 0.74 -3.74 16 24 C -0.13 -3.84 9.86 23.33 0.23 -3.61 16 25 C -0.08 -2.37 5.98 -20.36 -0.12 -2.49 16 26 N -0.54 -26.12 9.44 -179.57 -1.70 -27.81 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 31 H 0.11 6.06 6.26 -2.91 -0.02 6.04 16 32 H 0.29 13.65 8.30 -92.70 -0.77 12.88 16 33 H 0.40 17.31 6.67 -92.71 -0.62 16.70 16 34 H 0.05 1.98 7.96 -2.39 -0.02 1.97 16 35 H 0.05 1.81 7.78 -2.39 -0.02 1.80 16 36 H 0.14 3.21 7.99 -2.91 -0.02 3.18 16 37 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 39 H 0.19 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.13 4.17 7.85 -2.91 -0.02 4.15 16 Total: -1.00 -62.91 352.26 2.76 -60.15 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: 0.46 Total: 40.92 kcal Atomic # 6 Polarization: -43.58 SS G_CDS: 4.99 Total: -38.59 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -3.40 Total: -103.89 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.31 Total: 0.87 kcal Total: -62.91 2.76 -60.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160187368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.894 kcal (2) G-P(sol) polarization free energy of solvation -62.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds