Wall clock time and date at job start Tue Mar 31 2020 13:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86796 * 119.99857 * 2 1 4 4 H 1.48495 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47332 * 300.00469 * 3 2 1 6 6 H 1.48501 * 109.46979 * 60.00076 * 3 2 1 7 7 C 1.40050 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00085 * 179.97438 * 7 2 1 9 9 C 1.41583 * 119.99897 * 359.97438 * 7 2 1 10 10 N 1.33444 * 119.23868 * 0.02562 * 9 7 2 11 11 C 1.32175 * 120.85691 * 179.72540 * 10 9 7 12 12 Cl 1.73604 * 120.33367 * 179.97438 * 11 10 9 13 13 C 1.38843 * 119.32612 * 359.97438 * 11 10 9 14 14 C 1.39998 * 118.58835 * 359.97438 * 13 11 10 15 15 N 1.38545 * 120.44268 * 179.97438 * 14 13 11 16 16 C 1.46497 * 120.00176 * 0.02562 * 15 14 13 17 17 C 1.53000 * 109.47076 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47076 * 179.97438 * 17 16 15 19 19 C 1.45750 * 117.94854 * 269.73693 * 18 17 16 20 20 C 1.53104 * 110.38818 * 160.74511 * 19 18 17 21 21 C 1.53347 * 108.53052 * 51.11348 * 20 19 18 22 22 C 1.53063 * 108.42552 * 292.31512 * 21 20 19 23 23 C 1.33356 * 117.94560 * 89.99876 * 18 17 16 24 24 O 1.21275 * 118.24745 * 2.24920 * 23 18 17 25 25 N 1.32586 * 119.10981 * 0.02562 * 14 13 11 26 26 H 0.96999 * 120.00029 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.69856 * 179.97438 * 13 11 10 28 28 H 0.97000 * 119.99637 * 180.02562 * 15 14 13 29 29 H 1.09000 * 109.46814 * 299.99414 * 16 15 14 30 30 H 1.08995 * 109.47752 * 59.99372 * 16 15 14 31 31 H 1.09000 * 109.47157 * 299.99616 * 17 16 15 32 32 H 1.09002 * 109.47274 * 59.99933 * 17 16 15 33 33 H 1.09002 * 109.30155 * 281.23519 * 19 18 17 34 34 H 1.08998 * 109.29920 * 40.61423 * 19 18 17 35 35 H 1.08999 * 109.80398 * 291.32951 * 20 19 18 36 36 H 1.08999 * 109.68228 * 170.82867 * 20 19 18 37 37 H 1.08998 * 109.67440 * 172.57576 * 21 20 19 38 38 H 1.09004 * 109.70066 * 52.05930 * 21 20 19 39 39 H 1.09006 * 109.40035 * 288.76592 * 22 21 20 40 40 H 1.08999 * 109.33568 * 168.98146 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3464 -0.0006 5 1 1.8821 2.3965 -1.2124 6 1 1.8821 2.3964 1.2125 7 6 2.0073 -1.2129 -0.0005 8 1 3.0873 -1.2129 -0.0010 9 6 1.2993 -2.4390 -0.0005 10 7 -0.0350 -2.4213 -0.0005 11 6 -0.7279 -3.5468 -0.0060 12 17 -2.4635 -3.5079 -0.0052 13 6 -0.0536 -4.7605 -0.0123 14 6 1.3463 -4.7491 -0.0132 15 7 2.0580 -5.9377 -0.0189 16 6 1.3458 -7.2179 -0.0246 17 6 2.3584 -8.3649 -0.0308 18 7 1.6462 -9.6450 -0.0358 19 6 1.3206 -10.2507 1.2493 20 6 0.2028 -11.2838 1.0841 21 6 0.5894 -12.2433 -0.0479 22 6 0.5723 -11.4671 -1.3670 23 6 1.3411 -10.1858 -1.2160 24 8 1.7044 -9.6126 -2.2211 25 7 1.9818 -3.5855 -0.0076 26 1 -0.4850 0.8400 0.0004 27 1 -0.5977 -5.6934 -0.0164 28 1 3.0279 -5.9223 -0.0192 29 1 0.7205 -7.2897 0.8654 30 1 0.7197 -7.2816 -0.9145 31 1 2.9834 -8.2929 -0.9209 32 1 2.9847 -8.3014 0.8591 33 1 2.2084 -10.7368 1.6537 34 1 0.9922 -9.4744 1.9404 35 1 -0.7312 -10.7806 0.8340 36 1 0.0799 -11.8431 2.0116 37 1 -0.1276 -13.0630 -0.0950 38 1 1.5888 -12.6397 0.1316 39 1 -0.4583 -11.2408 -1.6406 40 1 1.0295 -12.0737 -2.1486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161936199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:59 Heat of formation + Delta-G solvation = 3.485693 kcal Electronic energy + Delta-G solvation = -24383.476874 eV Core-core repulsion = 20644.850590 eV Total energy + Delta-G solvation = -3738.626283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72476 -39.03238 -36.76402 -36.21356 -35.54867 -34.30656 -33.34164 -31.34746 -30.16892 -29.79693 -27.82832 -26.39971 -24.89107 -23.57819 -22.30701 -21.90073 -21.15695 -18.92224 -18.00839 -16.86866 -16.70038 -16.65849 -16.02773 -15.59819 -14.94623 -14.70887 -14.62191 -14.40938 -14.07653 -13.86587 -13.59330 -13.52702 -13.27608 -13.24059 -12.78433 -12.18426 -11.99634 -11.78573 -11.59581 -11.39513 -11.38720 -11.34250 -11.28244 -10.98657 -10.81657 -10.34968 -10.18161 -9.92756 -9.84230 -9.11721 -9.02679 -8.95617 -8.24857 -7.47920 -7.15892 -6.55877 -4.78711 2.46354 2.53521 2.66842 2.97878 2.99846 3.07060 3.13067 3.14078 3.86153 3.99810 4.24605 4.33953 4.36647 4.44356 4.63058 4.88114 4.93834 5.02664 5.10902 5.17222 5.34455 5.40206 5.43469 5.49136 5.54348 5.77531 5.82547 5.90424 5.96524 6.10429 6.17412 6.39080 6.43794 6.83350 6.94022 7.14014 7.23994 7.70998 7.98947 8.12748 8.20857 8.53657 8.60725 9.06230 10.10079 10.24871 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002726 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.446099 B =10270.090817 C =11103.253586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.065 3.935 3 Si 0.919 3.081 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.394 4.394 8 H 0.096 0.904 9 C 0.435 3.565 10 N -0.527 5.527 11 C 0.270 3.730 12 Cl -0.083 7.083 13 C -0.404 4.404 14 C 0.457 3.543 15 N -0.727 5.727 16 C 0.127 3.873 17 C 0.097 3.903 18 N -0.600 5.600 19 C 0.111 3.889 20 C -0.138 4.138 21 C -0.124 4.124 22 C -0.134 4.134 23 C 0.514 3.486 24 O -0.547 6.547 25 N -0.641 5.641 26 H 0.276 0.724 27 H 0.109 0.891 28 H 0.398 0.602 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 -20.125 3.715 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.163 4.163 3 Si 0.743 3.257 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.429 4.429 8 H 0.115 0.885 9 C 0.199 3.801 10 N -0.248 5.248 11 C 0.088 3.912 12 Cl -0.055 7.055 13 C -0.437 4.437 14 C 0.210 3.790 15 N -0.365 5.365 16 C 0.001 3.999 17 C -0.026 4.026 18 N -0.333 5.333 19 C -0.012 4.012 20 C -0.175 4.175 21 C -0.161 4.161 22 C -0.174 4.174 23 C 0.302 3.698 24 O -0.425 6.425 25 N -0.371 5.371 26 H 0.088 0.912 27 H 0.127 0.873 28 H 0.232 0.768 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.389 -18.894 3.190 19.165 hybrid contribution -0.188 -0.157 0.107 0.267 sum 0.201 -19.050 3.298 19.335 Atomic orbital electron populations 1.70164 1.07244 1.28260 1.26597 1.26139 0.95052 1.01460 0.93663 0.86074 0.80783 0.80226 0.78639 1.18125 1.19666 1.19673 1.19391 0.94774 0.87236 1.41507 0.88549 1.19483 0.83574 0.89920 0.87166 1.68592 1.08188 1.25592 1.22459 1.21436 0.85313 0.90772 0.93642 1.98292 1.11700 1.98825 1.96677 1.20903 0.93184 0.97120 1.32505 1.18069 0.87338 0.86206 0.87354 1.43816 1.07886 1.01530 1.83253 1.21380 0.94865 0.82202 1.01484 1.21617 0.94780 0.82026 1.04196 1.47198 1.57992 1.21926 1.06188 1.21500 0.98270 0.96683 0.84728 1.21931 0.98612 0.97053 0.99938 1.21666 1.02708 0.98152 0.93617 1.21666 1.01979 0.94001 0.99737 1.20218 0.79863 0.86957 0.82744 1.90763 1.53078 1.62701 1.35911 1.68220 1.40078 0.96902 1.31863 0.91228 0.87290 0.76758 0.92552 0.92150 0.88750 0.89905 0.91473 0.90209 0.90607 0.89646 0.90506 0.91122 0.88146 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.64 11.42 55.55 0.63 -18.00 16 2 C 0.06 1.64 5.50 -17.35 -0.10 1.54 16 3 Si 0.92 18.49 29.56 -169.99 -5.02 13.46 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.39 -10.74 9.37 -37.63 -0.35 -11.09 16 8 H 0.10 2.51 7.85 -52.49 -0.41 2.10 16 9 C 0.43 12.38 7.37 -158.34 -1.17 11.21 16 10 N -0.53 -14.96 7.86 -9.83 -0.08 -15.04 16 11 C 0.27 6.87 7.33 -17.18 -0.13 6.74 16 12 Cl -0.08 -1.80 29.15 -51.86 -1.51 -3.31 16 13 C -0.40 -9.46 9.23 -38.70 -0.36 -9.82 16 14 C 0.46 10.70 7.71 -154.98 -1.19 9.50 16 15 N -0.73 -13.15 5.71 -60.27 -0.34 -13.50 16 16 C 0.13 1.87 5.24 -4.04 -0.02 1.85 16 17 C 0.10 1.12 5.33 -4.04 -0.02 1.10 16 18 N -0.60 -6.05 2.81 -174.85 -0.49 -6.55 16 19 C 0.11 0.74 6.32 -4.39 -0.03 0.71 16 20 C -0.14 -0.70 6.03 -26.50 -0.16 -0.86 16 21 C -0.12 -0.63 6.03 -26.52 -0.16 -0.79 16 22 C -0.13 -1.03 6.03 -28.10 -0.17 -1.20 16 23 C 0.51 6.04 7.46 -11.87 -0.09 5.96 16 24 O -0.55 -8.99 16.18 5.56 0.09 -8.90 16 25 N -0.64 -16.98 10.39 -11.90 -0.12 -17.10 16 26 H 0.28 6.60 8.29 -40.82 -0.34 6.26 16 27 H 0.11 2.29 6.85 -52.49 -0.36 1.93 16 28 H 0.40 6.60 8.60 -40.82 -0.35 6.25 16 29 H 0.06 0.80 7.97 -51.93 -0.41 0.38 16 30 H 0.06 1.02 7.97 -51.93 -0.41 0.61 16 31 H 0.09 1.25 7.13 -51.93 -0.37 0.88 16 32 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -33.60 351.08 -10.75 -44.35 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.25 Total: 4.44 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: -3.94 Total: 14.85 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -0.40 Total: -70.18 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.46 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -1.51 Total: -3.31 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.60 -10.75 -44.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161936199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.833 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds