Wall clock time and date at job start Tue Mar 31 2020 13:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86796 * 119.99857 * 2 1 4 4 H 1.48495 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47332 * 300.00469 * 3 2 1 6 6 H 1.48501 * 109.46979 * 60.00076 * 3 2 1 7 7 C 1.40050 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00085 * 179.97438 * 7 2 1 9 9 C 1.41583 * 119.99897 * 359.97438 * 7 2 1 10 10 N 1.33444 * 119.23868 * 0.02562 * 9 7 2 11 11 C 1.32175 * 120.85691 * 179.72540 * 10 9 7 12 12 Cl 1.73604 * 120.33367 * 179.97438 * 11 10 9 13 13 C 1.38843 * 119.32612 * 359.97438 * 11 10 9 14 14 C 1.39998 * 118.58835 * 359.97438 * 13 11 10 15 15 N 1.38545 * 120.44268 * 179.97438 * 14 13 11 16 16 C 1.46497 * 120.00176 * 0.02562 * 15 14 13 17 17 C 1.53000 * 109.47076 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47076 * 179.97438 * 17 16 15 19 19 C 1.45750 * 117.94854 * 269.73693 * 18 17 16 20 20 C 1.53104 * 110.38818 * 160.74511 * 19 18 17 21 21 C 1.53347 * 108.53052 * 51.11348 * 20 19 18 22 22 C 1.53063 * 108.42552 * 292.31512 * 21 20 19 23 23 C 1.33356 * 117.94560 * 89.99876 * 18 17 16 24 24 O 1.21275 * 118.24745 * 2.24920 * 23 18 17 25 25 N 1.32586 * 119.10981 * 0.02562 * 14 13 11 26 26 H 0.96999 * 120.00029 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.69856 * 179.97438 * 13 11 10 28 28 H 0.97000 * 119.99637 * 180.02562 * 15 14 13 29 29 H 1.09000 * 109.46814 * 299.99414 * 16 15 14 30 30 H 1.08995 * 109.47752 * 59.99372 * 16 15 14 31 31 H 1.09000 * 109.47157 * 299.99616 * 17 16 15 32 32 H 1.09002 * 109.47274 * 59.99933 * 17 16 15 33 33 H 1.09002 * 109.30155 * 281.23519 * 19 18 17 34 34 H 1.08998 * 109.29920 * 40.61423 * 19 18 17 35 35 H 1.08999 * 109.80398 * 291.32951 * 20 19 18 36 36 H 1.08999 * 109.68228 * 170.82867 * 20 19 18 37 37 H 1.08998 * 109.67440 * 172.57576 * 21 20 19 38 38 H 1.09004 * 109.70066 * 52.05930 * 21 20 19 39 39 H 1.09006 * 109.40035 * 288.76592 * 22 21 20 40 40 H 1.08999 * 109.33568 * 168.98146 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3464 -0.0006 5 1 1.8821 2.3965 -1.2124 6 1 1.8821 2.3964 1.2125 7 6 2.0073 -1.2129 -0.0005 8 1 3.0873 -1.2129 -0.0010 9 6 1.2993 -2.4390 -0.0005 10 7 -0.0350 -2.4213 -0.0005 11 6 -0.7279 -3.5468 -0.0060 12 17 -2.4635 -3.5079 -0.0052 13 6 -0.0536 -4.7605 -0.0123 14 6 1.3463 -4.7491 -0.0132 15 7 2.0580 -5.9377 -0.0189 16 6 1.3458 -7.2179 -0.0246 17 6 2.3584 -8.3649 -0.0308 18 7 1.6462 -9.6450 -0.0358 19 6 1.3206 -10.2507 1.2493 20 6 0.2028 -11.2838 1.0841 21 6 0.5894 -12.2433 -0.0479 22 6 0.5723 -11.4671 -1.3670 23 6 1.3411 -10.1858 -1.2160 24 8 1.7044 -9.6126 -2.2211 25 7 1.9818 -3.5855 -0.0076 26 1 -0.4850 0.8400 0.0004 27 1 -0.5977 -5.6934 -0.0164 28 1 3.0279 -5.9223 -0.0192 29 1 0.7205 -7.2897 0.8654 30 1 0.7197 -7.2816 -0.9145 31 1 2.9834 -8.2929 -0.9209 32 1 2.9847 -8.3014 0.8591 33 1 2.2084 -10.7368 1.6537 34 1 0.9922 -9.4744 1.9404 35 1 -0.7312 -10.7806 0.8340 36 1 0.0799 -11.8431 2.0116 37 1 -0.1276 -13.0630 -0.0950 38 1 1.5888 -12.6397 0.1316 39 1 -0.4583 -11.2408 -1.6406 40 1 1.0295 -12.0737 -2.1486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161936199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:59 Heat of formation + Delta-G solvation = -18.278082 kcal Electronic energy + Delta-G solvation = -24384.420622 eV Core-core repulsion = 20644.850590 eV Total energy + Delta-G solvation = -3739.570032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.58321 -40.91236 -37.88326 -37.46816 -37.27618 -35.63332 -34.86310 -33.17459 -31.72229 -30.58579 -29.14017 -28.36353 -25.59926 -24.66337 -24.00676 -23.21647 -22.52040 -19.97253 -19.46106 -18.39287 -18.06885 -17.55457 -17.45873 -16.59362 -16.54056 -15.98955 -15.88719 -15.69236 -15.22643 -15.12826 -14.97618 -14.84594 -14.53475 -14.23918 -14.18180 -13.24423 -13.21061 -13.13603 -13.04094 -12.78289 -12.72819 -12.47873 -12.19554 -12.05324 -11.92340 -11.83243 -11.74941 -11.60139 -10.96254 -10.95249 -10.71446 -10.16079 -9.82648 -9.46155 -8.89244 -8.45453 -6.81583 0.60292 1.09120 1.09407 1.42420 1.52599 1.55198 1.60326 1.79991 2.21035 2.55520 2.73095 3.58343 3.81289 3.82400 3.86955 3.93175 3.96252 4.04221 4.19751 4.33947 4.44494 4.53373 4.56418 4.58160 4.62984 4.77828 4.81950 4.90461 4.93022 4.96604 5.09246 5.10510 5.16586 5.26390 5.38042 5.42372 5.96205 6.14456 6.43299 6.45955 6.62950 6.71494 7.11576 7.18326 8.16408 8.35196 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002726 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.446099 B =10270.090817 C =11103.253586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.023 3.977 3 Si 1.002 2.998 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.261 1.261 7 C -0.424 4.424 8 H 0.096 0.904 9 C 0.406 3.594 10 N -0.561 5.561 11 C 0.248 3.752 12 Cl -0.056 7.056 13 C -0.402 4.402 14 C 0.450 3.550 15 N -0.712 5.712 16 C 0.132 3.868 17 C 0.105 3.895 18 N -0.595 5.595 19 C 0.102 3.898 20 C -0.135 4.135 21 C -0.117 4.117 22 C -0.131 4.131 23 C 0.504 3.496 24 O -0.605 6.605 25 N -0.663 5.663 26 H 0.285 0.715 27 H 0.132 0.868 28 H 0.406 0.594 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -21.555 5.053 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.201 4.201 3 Si 0.821 3.179 4 H -0.176 1.176 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.459 4.459 8 H 0.114 0.886 9 C 0.170 3.830 10 N -0.284 5.284 11 C 0.069 3.931 12 Cl -0.028 7.028 13 C -0.434 4.434 14 C 0.202 3.798 15 N -0.349 5.349 16 C 0.006 3.994 17 C -0.019 4.019 18 N -0.326 5.326 19 C -0.019 4.019 20 C -0.172 4.172 21 C -0.154 4.154 22 C -0.170 4.170 23 C 0.294 3.706 24 O -0.487 6.487 25 N -0.394 5.394 26 H 0.096 0.904 27 H 0.150 0.850 28 H 0.242 0.758 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.468 -20.424 4.569 20.934 hybrid contribution -0.287 0.121 -0.297 0.430 sum 0.182 -20.302 4.273 20.748 Atomic orbital electron populations 1.70236 1.08998 1.29857 1.26906 1.27122 0.95878 1.04765 0.92381 0.84865 0.79190 0.74766 0.79087 1.17628 1.18814 1.18553 1.19743 0.95037 0.88253 1.42898 0.88557 1.19921 0.84251 0.91026 0.87846 1.68595 1.08448 1.26929 1.24397 1.21880 0.86743 0.91006 0.93472 1.98281 1.09209 1.98796 1.96543 1.21130 0.93425 0.97413 1.31455 1.18422 0.87961 0.86944 0.86498 1.43917 1.08365 1.01109 1.81495 1.21494 0.95480 0.81578 1.00806 1.21457 0.93986 0.81796 1.04636 1.47345 1.57011 1.21015 1.07274 1.21835 0.99905 0.97350 0.82835 1.21960 0.97455 0.96689 1.01121 1.21668 1.03762 0.98221 0.91755 1.21711 1.01368 0.92236 1.01718 1.21041 0.79337 0.87877 0.82312 1.90735 1.55524 1.64542 1.37901 1.68259 1.40412 0.97519 1.33239 0.90375 0.85026 0.75830 0.91246 0.94512 0.90749 0.86987 0.89474 0.89701 0.91348 0.87094 0.88400 0.90532 0.87608 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.88 11.42 21.84 0.25 -39.64 16 2 C 0.02 1.17 5.50 85.30 0.47 1.64 16 3 Si 1.00 37.91 29.56 68.60 2.03 39.94 16 4 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 6 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 7 C -0.42 -23.75 9.37 23.54 0.22 -23.53 16 8 H 0.10 5.16 7.85 -2.91 -0.02 5.14 16 9 C 0.41 23.86 7.37 135.16 1.00 24.85 16 10 N -0.56 -32.69 7.86 -185.01 -1.45 -34.14 16 11 C 0.25 12.82 7.33 84.79 0.62 13.44 16 12 Cl -0.06 -2.44 29.15 -2.72 -0.08 -2.52 16 13 C -0.40 -18.86 9.23 22.84 0.21 -18.65 16 14 C 0.45 21.24 7.71 133.37 1.03 22.27 16 15 N -0.71 -25.55 5.71 -344.58 -1.97 -27.52 16 16 C 0.13 3.78 5.24 86.38 0.45 4.23 16 17 C 0.11 2.32 5.33 86.38 0.46 2.78 16 18 N -0.59 -11.14 2.81 -826.29 -2.32 -13.46 16 19 C 0.10 1.05 6.32 86.56 0.55 1.60 16 20 C -0.13 -0.92 6.03 30.75 0.19 -0.74 16 21 C -0.12 -0.82 6.03 30.73 0.19 -0.63 16 22 C -0.13 -1.81 6.03 29.71 0.18 -1.63 16 23 C 0.50 11.62 7.46 87.71 0.65 12.28 16 24 O -0.61 -20.51 16.18 -3.01 -0.05 -20.56 16 25 N -0.66 -35.99 10.39 -191.55 -1.99 -37.98 16 26 H 0.29 13.74 8.29 -92.71 -0.77 12.98 16 27 H 0.13 5.42 6.85 -2.91 -0.02 5.40 16 28 H 0.41 13.33 8.60 -92.71 -0.80 12.53 16 29 H 0.07 1.84 7.97 -2.39 -0.02 1.82 16 30 H 0.04 1.25 7.97 -2.39 -0.02 1.23 16 31 H 0.07 1.99 7.13 -2.39 -0.02 1.97 16 32 H 0.11 1.83 8.01 -2.39 -0.02 1.81 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.07 0.60 8.12 -2.39 -0.02 0.58 16 36 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.08 0.49 8.13 -2.38 -0.02 0.47 16 39 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -76.36 351.08 0.91 -75.45 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.28 Total: 22.52 kcal Atomic # 6 Polarization: 31.70 SS G_CDS: 6.21 Total: 37.91 kcal Atomic # 7 Polarization: -145.25 SS G_CDS: -7.48 Total: -152.74 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.08 Total: -2.52 kcal Total: -76.36 0.91 -75.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161936199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.174 kcal (2) G-P(sol) polarization free energy of solvation -76.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds