Wall clock time and date at job start Tue Mar 31 2020 13:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00306 * 2 1 4 4 H 1.48504 * 109.47167 * 240.00393 * 3 2 1 5 5 H 1.48497 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47403 * 120.00144 * 3 2 1 7 7 C 1.38817 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00362 * 164.52432 * 7 2 1 9 9 N 1.36940 * 119.99883 * 344.51796 * 7 2 1 10 10 C 1.47004 * 121.37583 * 335.97779 * 9 7 2 11 11 C 1.50326 * 109.16355 * 222.96427 * 10 9 7 12 12 C 1.29451 * 123.65405 * 349.01971 * 11 10 9 13 13 C 1.50696 * 117.69871 * 180.85422 * 12 11 10 14 14 C 1.53004 * 109.46735 * 94.99913 * 13 12 11 15 15 N 1.46502 * 109.47229 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00083 * 180.02562 * 15 14 13 17 17 O 1.21731 * 119.99829 * 359.97438 * 16 15 14 18 18 C 1.46343 * 119.99656 * 180.02562 * 16 15 14 19 19 C 1.36738 * 125.43604 * 179.97438 * 18 16 15 20 20 C 1.37338 * 113.33427 * 179.97438 * 19 18 16 21 21 C 1.34210 * 115.04375 * 0.02562 * 20 19 18 22 22 F 1.35101 * 124.53794 * 179.97438 * 21 20 19 23 23 S 1.70615 * 110.92011 * 359.97438 * 21 20 19 24 24 C 1.49974 * 124.60858 * 1.14055 * 12 11 10 25 25 C 1.47335 * 121.37504 * 155.99104 * 9 7 2 26 26 H 0.97000 * 119.99649 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.52707 * 103.05953 * 10 9 7 28 28 H 1.09001 * 109.52352 * 342.86452 * 10 9 7 29 29 H 1.08001 * 118.17321 * 168.99491 * 11 10 9 30 30 H 1.08998 * 109.47221 * 335.00568 * 13 12 11 31 31 H 1.08996 * 109.47421 * 215.00120 * 13 12 11 32 32 H 1.09003 * 109.47138 * 60.00183 * 14 13 12 33 33 H 1.08996 * 109.47335 * 300.00259 * 14 13 12 34 34 H 0.97001 * 120.00016 * 0.02562 * 15 14 13 35 35 H 1.08001 * 123.33193 * 359.95969 * 19 18 16 36 36 H 1.08000 * 122.47918 * 179.72615 * 20 19 18 37 37 H 1.09002 * 109.31658 * 101.00772 * 24 12 11 38 38 H 1.08995 * 109.31299 * 220.44143 * 24 12 11 39 39 H 1.09005 * 109.78214 * 237.79426 * 25 9 7 40 40 H 1.09000 * 109.77995 * 358.60214 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0608 -1.2191 -0.2501 9 7 1.3627 -2.3667 0.3155 10 6 0.1442 -2.3661 1.1378 11 6 0.2243 -3.4841 2.1396 12 6 1.1199 -4.4180 2.1022 13 6 1.0634 -5.4856 3.1642 14 6 0.2865 -6.6922 2.6335 15 7 0.2310 -7.7299 3.6662 16 6 -0.4070 -8.8914 3.4207 17 8 -0.9376 -9.0780 2.3411 18 6 -0.4629 -9.9277 4.4525 19 6 -1.0781 -11.1421 4.3239 20 6 -0.9777 -11.9245 5.4482 21 6 -0.3026 -11.3707 6.4673 22 9 -0.0895 -11.9688 7.6599 23 16 0.2505 -9.8102 6.0552 24 6 2.2135 -4.5090 1.0799 25 6 1.8588 -3.6721 -0.1543 26 1 -0.4849 0.8401 -0.0004 27 1 -0.7267 -2.5114 0.4987 28 1 0.0584 -1.4137 1.6611 29 1 -0.5058 -3.5093 2.9350 30 1 0.5631 -5.0919 4.0489 31 1 2.0762 -5.7920 3.4257 32 1 0.7869 -7.0860 1.7488 33 1 -0.7263 -6.3858 2.3720 34 1 0.6535 -7.5811 4.5266 35 1 -1.5922 -11.4550 3.4271 36 1 -1.4141 -12.9105 5.5094 37 1 3.1439 -4.1422 1.5136 38 1 2.3433 -5.5496 0.7825 39 1 1.0845 -4.1738 -0.7348 40 1 2.7474 -3.5294 -0.7692 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161987275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:14 Heat of formation + Delta-G solvation = -9.112553 kcal Electronic energy + Delta-G solvation = -23576.567512 eV Core-core repulsion = 19819.518673 eV Total energy + Delta-G solvation = -3757.048840 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -49.61274 -40.06115 -38.13939 -37.69581 -35.50120 -33.63990 -31.52236 -30.28660 -29.72851 -28.52173 -25.85170 -24.92113 -23.20872 -22.60556 -21.74744 -21.00107 -20.21034 -19.34341 -17.61900 -17.20386 -16.91835 -16.52378 -16.03935 -15.73939 -15.43972 -15.02120 -14.99121 -14.56014 -14.19675 -14.07401 -13.61482 -13.52821 -13.34476 -12.86976 -12.62269 -12.57305 -12.23665 -12.03860 -11.61278 -11.57912 -11.43217 -11.04172 -10.90220 -10.72362 -10.46580 -10.32368 -10.19636 -9.81034 -9.55774 -9.43038 -9.30349 -9.14183 -8.64862 -7.93407 -6.71992 -5.77952 -3.16693 -0.18632 0.43683 1.06141 1.72482 2.70744 2.84791 3.04130 3.39297 3.44809 3.45913 3.75860 4.39155 4.50407 4.71980 4.76857 5.06466 5.09464 5.23804 5.27098 5.40141 5.47456 5.54940 5.61930 5.65047 5.76086 5.96916 5.98874 6.12134 6.18687 6.23011 6.38932 6.55538 6.78965 6.91126 7.13676 7.23431 7.32949 7.40723 7.75413 7.84939 7.88093 8.40132 9.21485 9.84348 10.42980 11.32420 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.036443 B = 0.001971 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.136911 B =14202.285275 C =14456.179825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.596 5.596 10 C 0.196 3.804 11 C -0.145 4.145 12 C -0.143 4.143 13 C -0.093 4.093 14 C 0.124 3.876 15 N -0.724 5.724 16 C 0.589 3.411 17 O -0.521 6.521 18 C -0.258 4.258 19 C -0.036 4.036 20 C -0.181 4.181 21 C -0.022 4.022 22 F -0.098 7.098 23 S 0.224 5.776 24 C -0.091 4.091 25 C 0.143 3.857 26 H 0.254 0.746 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.396 0.604 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.024 0.976 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 -22.447 14.232 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.085 0.915 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.165 4.165 12 C -0.144 4.144 13 C -0.131 4.131 14 C 0.002 3.998 15 N -0.375 5.375 16 C 0.374 3.626 17 O -0.399 6.399 18 C -0.379 4.379 19 C -0.068 4.068 20 C -0.213 4.213 21 C -0.160 4.160 22 F -0.077 7.077 23 S 0.489 5.511 24 C -0.130 4.130 25 C 0.016 3.984 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.230 0.770 35 H 0.183 0.817 36 H 0.177 0.823 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.056 -21.305 14.246 25.629 hybrid contribution -0.219 -0.448 0.213 0.542 sum -0.163 -21.753 14.458 26.120 Atomic orbital electron populations 1.70007 1.05156 1.25570 1.54743 1.24992 0.95399 0.98278 1.01324 0.86323 0.78807 0.83316 0.78059 1.20937 1.21649 1.21131 1.19138 0.92182 0.84393 1.41793 0.91453 1.44128 1.29259 1.01170 1.57335 1.19710 0.88665 0.94739 0.89774 1.23139 0.96618 0.97333 0.99364 1.20203 0.99410 0.96558 0.98229 1.20925 1.00027 0.94083 0.98015 1.21541 1.01686 0.86389 0.90200 1.46004 1.56449 1.16459 1.18586 1.16764 0.78913 0.80964 0.85968 1.90886 1.45783 1.79295 1.23941 1.24606 1.12783 1.01686 0.98777 1.20525 0.96537 0.90699 0.99060 1.20326 1.04475 1.03945 0.92596 1.21957 1.08225 0.99246 0.86581 1.91550 1.93116 1.81988 1.41088 1.83431 1.51341 1.09489 1.06882 1.20797 0.96537 0.99026 0.96670 1.20993 0.97341 0.87215 0.92825 0.93578 0.94372 0.89140 0.89043 0.91431 0.91348 0.90754 0.90779 0.77005 0.81668 0.82296 0.91900 0.92893 0.95764 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.31 11.08 55.49 0.61 -25.69 16 2 C 0.00 -0.06 5.01 -17.43 -0.09 -0.14 16 3 Si 0.90 21.70 29.58 -169.99 -5.03 16.67 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.75 9.71 -15.06 -0.15 -6.89 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.60 -15.00 3.01 -173.56 -0.52 -15.53 16 10 C 0.20 4.69 5.23 -5.10 -0.03 4.66 16 11 C -0.14 -2.75 9.47 -35.78 -0.34 -3.09 16 12 C -0.14 -2.39 5.11 -100.99 -0.52 -2.91 16 13 C -0.09 -1.14 5.32 -27.88 -0.15 -1.29 16 14 C 0.12 1.52 5.66 -4.04 -0.02 1.50 16 15 N -0.72 -7.48 5.55 -61.72 -0.34 -7.82 16 16 C 0.59 6.97 7.77 -13.00 -0.10 6.86 16 17 O -0.52 -8.12 16.84 5.16 0.09 -8.03 16 18 C -0.26 -2.35 6.44 -36.87 -0.24 -2.59 16 19 C -0.04 -0.29 10.00 -40.45 -0.40 -0.69 16 20 C -0.18 -1.24 10.16 -41.33 -0.42 -1.66 16 21 C -0.02 -0.17 8.10 29.31 0.24 0.07 16 22 F -0.10 -0.80 17.32 2.25 0.04 -0.76 16 23 S 0.22 1.52 22.14 -107.50 -2.38 -0.86 16 24 C -0.09 -1.58 5.95 -28.08 -0.17 -1.74 16 25 C 0.14 2.99 6.59 -3.44 -0.02 2.97 16 26 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 2.40 6.41 -51.93 -0.33 2.06 16 29 H 0.09 1.53 7.73 -52.49 -0.41 1.12 16 30 H 0.07 0.77 7.78 -51.93 -0.40 0.37 16 31 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 32 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.40 3.06 7.58 -40.82 -0.31 2.75 16 35 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -31.59 354.01 -9.81 -41.41 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.21 Total: 0.24 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.40 Total: -4.95 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.25 Total: -49.04 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.03 kcal Atomic # 9 Polarization: -0.80 SS G_CDS: 0.04 Total: -0.76 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.38 Total: -0.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.59 -9.81 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161987275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.293 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds