Wall clock time and date at job start Tue Mar 31 2020 13:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00306 * 2 1 4 4 H 1.48504 * 109.47167 * 240.00393 * 3 2 1 5 5 H 1.48497 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47403 * 120.00144 * 3 2 1 7 7 C 1.38817 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00362 * 164.52432 * 7 2 1 9 9 N 1.36940 * 119.99883 * 344.51796 * 7 2 1 10 10 C 1.47004 * 121.37583 * 335.97779 * 9 7 2 11 11 C 1.50326 * 109.16355 * 222.96427 * 10 9 7 12 12 C 1.29451 * 123.65405 * 349.01971 * 11 10 9 13 13 C 1.50696 * 117.69871 * 180.85422 * 12 11 10 14 14 C 1.53004 * 109.46735 * 94.99913 * 13 12 11 15 15 N 1.46502 * 109.47229 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00083 * 180.02562 * 15 14 13 17 17 O 1.21731 * 119.99829 * 359.97438 * 16 15 14 18 18 C 1.46343 * 119.99656 * 180.02562 * 16 15 14 19 19 C 1.36738 * 125.43604 * 179.97438 * 18 16 15 20 20 C 1.37338 * 113.33427 * 179.97438 * 19 18 16 21 21 C 1.34210 * 115.04375 * 0.02562 * 20 19 18 22 22 F 1.35101 * 124.53794 * 179.97438 * 21 20 19 23 23 S 1.70615 * 110.92011 * 359.97438 * 21 20 19 24 24 C 1.49974 * 124.60858 * 1.14055 * 12 11 10 25 25 C 1.47335 * 121.37504 * 155.99104 * 9 7 2 26 26 H 0.97000 * 119.99649 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.52707 * 103.05953 * 10 9 7 28 28 H 1.09001 * 109.52352 * 342.86452 * 10 9 7 29 29 H 1.08001 * 118.17321 * 168.99491 * 11 10 9 30 30 H 1.08998 * 109.47221 * 335.00568 * 13 12 11 31 31 H 1.08996 * 109.47421 * 215.00120 * 13 12 11 32 32 H 1.09003 * 109.47138 * 60.00183 * 14 13 12 33 33 H 1.08996 * 109.47335 * 300.00259 * 14 13 12 34 34 H 0.97001 * 120.00016 * 0.02562 * 15 14 13 35 35 H 1.08001 * 123.33193 * 359.95969 * 19 18 16 36 36 H 1.08000 * 122.47918 * 179.72615 * 20 19 18 37 37 H 1.09002 * 109.31658 * 101.00772 * 24 12 11 38 38 H 1.08995 * 109.31299 * 220.44143 * 24 12 11 39 39 H 1.09005 * 109.78214 * 237.79426 * 25 9 7 40 40 H 1.09000 * 109.77995 * 358.60214 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0608 -1.2191 -0.2501 9 7 1.3627 -2.3667 0.3155 10 6 0.1442 -2.3661 1.1378 11 6 0.2243 -3.4841 2.1396 12 6 1.1199 -4.4180 2.1022 13 6 1.0634 -5.4856 3.1642 14 6 0.2865 -6.6922 2.6335 15 7 0.2310 -7.7299 3.6662 16 6 -0.4070 -8.8914 3.4207 17 8 -0.9376 -9.0780 2.3411 18 6 -0.4629 -9.9277 4.4525 19 6 -1.0781 -11.1421 4.3239 20 6 -0.9777 -11.9245 5.4482 21 6 -0.3026 -11.3707 6.4673 22 9 -0.0895 -11.9688 7.6599 23 16 0.2505 -9.8102 6.0552 24 6 2.2135 -4.5090 1.0799 25 6 1.8588 -3.6721 -0.1543 26 1 -0.4849 0.8401 -0.0004 27 1 -0.7267 -2.5114 0.4987 28 1 0.0584 -1.4137 1.6611 29 1 -0.5058 -3.5093 2.9350 30 1 0.5631 -5.0919 4.0489 31 1 2.0762 -5.7920 3.4257 32 1 0.7869 -7.0860 1.7488 33 1 -0.7263 -6.3858 2.3720 34 1 0.6535 -7.5811 4.5266 35 1 -1.5922 -11.4550 3.4271 36 1 -1.4141 -12.9105 5.5094 37 1 3.1439 -4.1422 1.5136 38 1 2.3433 -5.5496 0.7825 39 1 1.0845 -4.1738 -0.7348 40 1 2.7474 -3.5294 -0.7692 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161987275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:13 Heat of formation + Delta-G solvation = -28.110087 kcal Electronic energy + Delta-G solvation = -23577.391307 eV Core-core repulsion = 19819.518673 eV Total energy + Delta-G solvation = -3757.872635 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.20639 -40.95688 -39.49329 -38.51713 -36.74960 -35.16531 -33.21846 -31.55460 -31.07474 -29.73268 -27.25026 -25.94198 -24.66395 -24.02755 -22.68234 -22.46781 -20.91264 -20.08333 -19.43771 -17.90649 -17.81629 -17.37319 -17.13344 -17.00403 -16.57629 -16.48480 -15.74390 -15.57623 -15.49256 -15.41537 -15.10924 -14.98851 -14.31911 -14.18761 -13.88564 -13.48512 -13.38192 -13.19322 -13.15626 -12.85687 -12.75583 -12.56536 -12.36927 -12.20233 -12.14499 -11.89692 -11.66877 -11.40718 -11.13058 -10.66868 -10.32584 -9.82184 -9.81643 -9.47853 -8.74149 -7.87238 -5.29313 -0.82091 -0.12757 0.46678 1.10577 1.41581 1.47127 1.49815 1.56541 2.02468 2.04317 2.51806 3.19117 3.29258 3.63290 3.70157 3.97348 4.08990 4.10304 4.12850 4.25145 4.30341 4.57165 4.59409 4.69137 4.72639 4.86695 4.89754 4.93382 4.98128 5.05837 5.10406 5.18954 5.25383 5.28323 5.43225 5.52036 5.61560 5.89056 6.28813 6.34401 6.34787 7.00649 7.14056 7.84402 8.39104 9.21169 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.036443 B = 0.001971 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.136911 B =14202.285275 C =14456.179825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.058 4.058 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.071 0.929 9 N -0.616 5.616 10 C 0.206 3.794 11 C -0.174 4.174 12 C -0.119 4.119 13 C -0.081 4.081 14 C 0.132 3.868 15 N -0.712 5.712 16 C 0.589 3.411 17 O -0.568 6.568 18 C -0.285 4.285 19 C -0.033 4.033 20 C -0.178 4.178 21 C -0.032 4.032 22 F -0.102 7.102 23 S 0.275 5.725 24 C -0.087 4.087 25 C 0.135 3.865 26 H 0.249 0.751 27 H 0.002 0.998 28 H 0.055 0.945 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.411 0.589 35 H 0.167 0.833 36 H 0.180 0.820 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.018 0.982 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 -24.190 16.291 29.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.252 4.252 3 Si 0.800 3.200 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.089 0.911 9 N -0.340 5.340 10 C 0.081 3.919 11 C -0.193 4.193 12 C -0.120 4.120 13 C -0.118 4.118 14 C 0.008 3.992 15 N -0.364 5.364 16 C 0.376 3.624 17 O -0.449 6.449 18 C -0.406 4.406 19 C -0.066 4.066 20 C -0.211 4.211 21 C -0.170 4.170 22 F -0.081 7.081 23 S 0.540 5.460 24 C -0.126 4.126 25 C 0.009 3.991 26 H 0.058 0.942 27 H 0.020 0.980 28 H 0.073 0.927 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.248 0.752 35 H 0.185 0.815 36 H 0.197 0.803 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.036 0.964 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.749 -23.066 16.345 28.324 hybrid contribution -0.694 -0.016 -0.441 0.823 sum 1.055 -23.082 15.904 28.051 Atomic orbital electron populations 1.70191 1.06634 1.25843 1.56154 1.25809 0.96204 1.01543 1.01688 0.85273 0.77439 0.78994 0.78342 1.20079 1.22098 1.20357 1.19504 0.92564 0.85599 1.41119 0.91111 1.44430 1.29448 1.02113 1.57991 1.19356 0.87262 0.95285 0.90007 1.22834 0.99465 0.97117 0.99883 1.20546 0.97157 0.96214 0.98117 1.20830 1.01875 0.92349 0.96784 1.21288 1.00588 0.86749 0.90531 1.45804 1.56093 1.15637 1.18834 1.17075 0.78031 0.81439 0.85867 1.90861 1.47777 1.80248 1.25997 1.24418 1.14773 1.01517 0.99860 1.20668 0.95936 0.90499 0.99518 1.20474 1.04119 1.04683 0.91806 1.22179 1.08409 0.99833 0.86588 1.91547 1.93152 1.82137 1.41259 1.83188 1.49929 1.08483 1.04413 1.20755 0.96778 1.00095 0.94958 1.21198 0.97044 0.86040 0.94789 0.94156 0.98010 0.92706 0.86806 0.89664 0.88687 0.91513 0.92542 0.75209 0.81534 0.80288 0.91249 0.89481 0.96374 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.71 11.08 21.65 0.24 -56.47 16 2 C -0.06 -3.28 5.01 84.86 0.43 -2.86 16 3 Si 0.97 45.34 29.58 68.60 2.03 47.37 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.26 -14.41 9.71 84.03 0.82 -13.60 16 8 H 0.07 3.81 7.88 -2.92 -0.02 3.78 16 9 N -0.62 -31.73 3.01 -703.03 -2.11 -33.84 16 10 C 0.21 10.29 5.23 85.42 0.45 10.74 16 11 C -0.17 -6.55 9.47 27.11 0.26 -6.29 16 12 C -0.12 -3.74 5.11 -15.13 -0.08 -3.82 16 13 C -0.08 -1.70 5.32 29.85 0.16 -1.54 16 14 C 0.13 2.93 5.66 86.38 0.49 3.42 16 15 N -0.71 -12.98 5.55 -467.39 -2.59 -15.57 16 16 C 0.59 13.15 7.77 86.35 0.67 13.82 16 17 O -0.57 -17.57 16.84 -4.45 -0.07 -17.64 16 18 C -0.28 -4.68 6.44 24.03 0.15 -4.53 16 19 C -0.03 -0.48 10.00 21.71 0.22 -0.26 16 20 C -0.18 -2.05 10.16 21.14 0.21 -1.83 16 21 C -0.03 -0.40 8.10 66.90 0.54 0.14 16 22 F -0.10 -1.42 17.32 44.97 0.78 -0.64 16 23 S 0.27 2.97 22.14 -56.49 -1.25 1.72 16 24 C -0.09 -2.81 5.95 29.72 0.18 -2.63 16 25 C 0.13 5.61 6.59 86.32 0.57 6.18 16 26 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.05 3.07 6.41 -2.39 -0.02 3.05 16 29 H 0.11 3.71 7.73 -2.91 -0.02 3.69 16 30 H 0.08 1.58 7.78 -2.39 -0.02 1.57 16 31 H 0.09 1.60 8.11 -2.39 -0.02 1.58 16 32 H 0.07 1.62 8.11 -2.39 -0.02 1.60 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.41 4.93 7.58 -92.71 -0.70 4.22 16 35 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.09 2.26 8.10 -2.39 -0.02 2.25 16 39 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.06 2.36 7.96 -2.39 -0.02 2.34 16 Total: -1.00 -71.31 354.01 2.44 -68.87 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.37 Total: 9.29 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 5.06 Total: -3.07 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -4.47 Total: -105.88 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.07 Total: -17.64 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.78 Total: -0.64 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.25 Total: 1.72 kcal Total: -71.31 2.44 -68.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161987275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.756 kcal (2) G-P(sol) polarization free energy of solvation -71.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds