Wall clock time and date at job start Tue Mar 31 2020 14:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29028 * 124.91645 * 2 1 4 4 C 1.31783 * 117.12871 * 180.02562 * 3 2 1 5 5 C 1.33638 * 114.49561 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.03322 * 180.02562 * 5 4 3 7 7 N 1.46504 * 109.47328 * 89.99882 * 6 5 4 8 8 C 1.39298 * 119.99846 * 179.97438 * 7 6 5 9 9 C 1.36222 * 120.30326 * 359.90733 * 8 7 6 10 10 C 1.41178 * 120.65044 * 180.02562 * 9 8 7 11 11 C 1.41183 * 119.51027 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00463 * 333.39647 * 11 10 9 13 13 C 1.39910 * 120.00046 * 153.39171 * 11 10 9 14 14 N 1.30844 * 119.99812 * 342.83896 * 13 11 10 15 15 Si 1.86804 * 120.00119 * 162.83804 * 13 11 10 16 16 H 1.48498 * 109.46952 * 59.99894 * 15 13 11 17 17 H 1.48498 * 109.47019 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46945 * 300.00083 * 15 13 11 19 19 C 1.39981 * 120.98022 * 0.02562 * 10 9 8 20 20 C 1.39871 * 120.02048 * 0.02742 * 19 10 9 21 21 C 1.40855 * 121.16524 * 179.97438 * 20 19 10 22 22 C 1.36190 * 119.60695 * 180.02562 * 21 20 19 23 23 C 1.39241 * 120.95580 * 359.95026 * 22 21 20 24 24 C 1.36526 * 120.99181 * 0.02690 * 23 22 21 25 25 C 1.39887 * 119.73034 * 359.97438 * 24 23 22 26 26 S 1.70980 * 124.91927 * 180.32451 * 2 1 3 27 27 H 1.08999 * 109.47677 * 89.97216 * 1 2 3 28 28 H 1.09002 * 109.47073 * 209.96899 * 1 2 3 29 29 H 1.09000 * 109.46985 * 329.96778 * 1 2 3 30 30 H 1.07994 * 122.74848 * 180.02562 * 4 3 2 31 31 H 1.08993 * 109.47286 * 329.99755 * 6 5 4 32 32 H 1.09008 * 109.46874 * 209.99541 * 6 5 4 33 33 H 0.97003 * 119.99637 * 359.97438 * 7 6 5 34 34 H 1.08003 * 119.67324 * 0.04822 * 9 8 7 35 35 H 0.97003 * 119.99716 * 179.97438 * 14 13 11 36 36 H 1.07997 * 119.99178 * 179.97438 * 19 10 9 37 37 H 1.07997 * 120.19199 * 0.03684 * 21 20 19 38 38 H 1.08007 * 119.52229 * 179.97438 * 22 21 20 39 39 H 1.07994 * 119.50868 * 180.30193 * 23 22 21 40 40 H 1.08003 * 120.13494 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 3.9354 -0.4005 -0.0015 6 6 5.3575 -0.8992 -0.0018 7 7 5.8182 -1.0620 1.3794 8 6 7.1104 -1.5159 1.6336 9 6 7.9501 -1.8121 0.6027 10 6 9.2610 -2.2732 0.8520 11 6 10.1112 -2.5726 -0.2346 12 1 9.6904 -2.8687 -1.1841 13 6 11.4992 -2.4855 -0.0814 14 7 12.0059 -1.8206 0.9251 15 14 12.6290 -3.3186 -1.3140 16 1 12.3818 -2.7607 -2.6678 17 1 14.0433 -3.0788 -0.9298 18 1 12.3600 -4.7789 -1.3236 19 6 9.7302 -2.4380 2.1605 20 6 8.8967 -2.1452 3.2449 21 6 9.3438 -2.3027 4.5713 22 6 8.5053 -2.0087 5.6033 23 6 7.2110 -1.5529 5.3670 24 6 6.7451 -1.3882 4.0944 25 6 7.5767 -1.6798 3.0080 26 16 2.4857 -1.4019 -0.0079 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 4.2531 1.7002 -0.0002 31 1 5.9949 -0.1793 -0.5149 32 1 5.4058 -1.8590 -0.5164 33 1 5.2234 -0.8536 2.1168 34 1 7.6098 -1.6927 -0.4153 35 1 12.9682 -1.7606 1.0315 36 1 10.7358 -2.7922 2.3328 37 1 10.3457 -2.6545 4.7685 38 1 8.8494 -2.1304 6.6199 39 1 6.5674 -1.3220 6.2030 40 1 5.7388 -1.0335 3.9270 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162163342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:09 Heat of formation + Delta-G solvation = 63.292096 kcal Electronic energy + Delta-G solvation = -23277.583051 eV Core-core repulsion = 19954.443137 eV Total energy + Delta-G solvation = -3323.139914 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87508 -40.51582 -37.89178 -36.92723 -34.68230 -33.49954 -32.03507 -31.27561 -30.22613 -28.62991 -27.05729 -26.08658 -24.54209 -23.49797 -23.03439 -21.66720 -20.46804 -19.47671 -19.12408 -18.08817 -17.72480 -16.81692 -16.63145 -16.34469 -15.89331 -15.74791 -15.45237 -15.09653 -14.68615 -14.67619 -14.48008 -14.12621 -14.00231 -13.79978 -13.52728 -13.36496 -13.14766 -12.90762 -12.78051 -12.58303 -12.49357 -12.42148 -12.05998 -11.83235 -11.45671 -11.21860 -11.14020 -10.67458 -10.57954 -10.36401 -9.84132 -9.60685 -9.19318 -8.62091 -7.74743 -6.25900 -0.42000 0.23705 0.27977 0.64920 0.70357 1.37320 1.42504 1.50549 1.70313 1.73092 2.20226 2.39726 2.65303 3.08919 3.18775 3.67889 3.88403 4.05238 4.09852 4.14944 4.19768 4.35787 4.54769 4.60219 4.66261 4.66916 4.76086 4.78678 4.97620 4.98939 5.04661 5.08429 5.20652 5.22520 5.29760 5.46526 5.67862 5.75884 5.88099 5.90458 6.11961 6.29516 6.41653 6.51586 6.66732 6.75316 6.92208 6.98665 7.10917 8.34579 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012159 B = 0.003414 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.355887 B = 8199.057847 C =10106.462971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.047 3.953 3 N -0.505 5.505 4 C 0.055 3.945 5 C -0.253 4.253 6 C 0.214 3.786 7 N -0.735 5.735 8 C 0.231 3.769 9 C -0.270 4.270 10 C 0.120 3.880 11 C -0.489 4.489 12 H 0.079 0.921 13 C 0.034 3.966 14 N -0.814 5.814 15 Si 0.980 3.020 16 H -0.256 1.256 17 H -0.270 1.270 18 H -0.261 1.261 19 C -0.278 4.278 20 C 0.005 3.995 21 C -0.174 4.174 22 C -0.098 4.098 23 C -0.197 4.197 24 C -0.072 4.072 25 C -0.184 4.184 26 S 0.159 5.841 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.182 0.818 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.399 0.601 34 H 0.107 0.893 35 H 0.287 0.713 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.146 1.355 -0.531 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.230 4.230 3 N -0.221 5.221 4 C -0.098 4.098 5 C -0.375 4.375 6 C 0.088 3.912 7 N -0.367 5.367 8 C 0.128 3.872 9 C -0.296 4.296 10 C 0.117 3.883 11 C -0.518 4.518 12 H 0.097 0.903 13 C -0.182 4.182 14 N -0.439 5.439 15 Si 0.801 3.199 16 H -0.180 1.180 17 H -0.194 1.194 18 H -0.185 1.185 19 C -0.299 4.299 20 C 0.004 3.996 21 C -0.192 4.192 22 C -0.116 4.116 23 C -0.215 4.215 24 C -0.090 4.090 25 C -0.186 4.186 26 S 0.414 5.586 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.198 0.802 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.235 0.765 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.467 0.899 -0.647 18.500 hybrid contribution 1.645 0.621 -0.336 1.790 sum -16.822 1.520 -0.982 16.919 Atomic orbital electron populations 1.20671 0.82533 1.05488 1.05317 1.27823 1.03431 0.90878 1.00886 1.66405 1.04964 1.32642 1.18074 1.21951 0.91392 0.96216 1.00196 1.25818 0.99664 0.96848 1.15125 1.19365 0.87116 1.00553 0.84135 1.44356 1.11302 1.74463 1.06612 1.18298 0.84591 0.92214 0.92052 1.20390 0.96356 1.16079 0.96742 1.17512 0.91155 0.86363 0.93292 1.19865 0.91831 1.41580 0.98499 0.90268 1.26779 1.00340 0.93102 0.97938 1.69955 1.14815 1.29817 1.29333 0.85288 0.76535 0.79503 0.78609 1.18033 1.19414 1.18549 1.20847 1.00111 1.17275 0.91659 1.18061 0.92668 0.94901 0.93970 1.21011 0.99892 1.06056 0.92277 1.20901 0.94108 0.97969 0.98642 1.20711 0.96837 1.07321 0.96678 1.20747 0.98198 0.97720 0.92363 1.18545 0.95353 1.13303 0.91439 1.84009 0.96177 1.11217 1.67187 0.87893 0.87982 0.88814 0.80155 0.90562 0.91423 0.76534 0.87480 0.90292 0.89030 0.87553 0.84711 0.84431 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.46 71.23 0.75 -0.08 16 2 C 0.05 0.87 7.39 88.52 0.65 1.53 16 3 N -0.51 -11.96 10.54 -191.45 -2.02 -13.98 16 4 C 0.06 1.31 11.25 83.66 0.94 2.25 16 5 C -0.25 -5.98 5.97 24.64 0.15 -5.84 16 6 C 0.21 5.97 5.43 85.63 0.47 6.44 16 7 N -0.74 -23.90 5.67 -339.09 -1.92 -25.82 16 8 C 0.23 9.85 6.78 39.51 0.27 10.12 16 9 C -0.27 -12.95 8.94 22.52 0.20 -12.74 16 10 C 0.12 6.58 5.55 -21.41 -0.12 6.46 16 11 C -0.49 -26.46 8.99 23.40 0.21 -26.25 16 12 H 0.08 4.06 7.90 -2.91 -0.02 4.03 16 13 C 0.03 1.76 5.10 85.25 0.44 2.20 16 14 N -0.81 -43.93 11.00 21.82 0.24 -43.68 16 15 Si 0.98 38.56 29.59 68.60 2.03 40.59 16 16 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 17 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 18 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 19 C -0.28 -15.46 8.38 23.09 0.19 -15.27 16 20 C 0.00 0.24 5.74 -21.32 -0.12 0.12 16 21 C -0.17 -7.65 9.78 22.43 0.22 -7.43 16 22 C -0.10 -3.56 9.95 22.03 0.22 -3.34 16 23 C -0.20 -6.66 9.96 22.11 0.22 -6.44 16 24 C -0.07 -2.64 9.54 22.27 0.21 -2.43 16 25 C -0.18 -8.20 5.90 -19.93 -0.12 -8.32 16 26 S 0.16 3.05 23.18 -56.49 -1.31 1.74 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.18 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.08 2.19 7.94 -2.39 -0.02 2.17 16 32 H 0.07 1.92 7.93 -2.38 -0.02 1.90 16 33 H 0.40 11.62 6.70 -92.71 -0.62 11.00 16 34 H 0.11 4.74 6.64 -2.91 -0.02 4.72 16 35 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 36 H 0.09 5.42 6.19 -2.91 -0.02 5.40 16 37 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 38 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 40 H 0.13 3.75 6.53 -2.91 -0.02 3.73 16 Total: -1.00 -65.71 351.21 2.25 -63.46 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: 0.46 Total: 36.71 kcal Atomic # 6 Polarization: -63.79 SS G_CDS: 4.77 Total: -59.02 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -3.70 Total: -83.48 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.31 Total: 1.74 kcal Total: -65.71 2.25 -63.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162163342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.749 kcal (2) G-P(sol) polarization free energy of solvation -65.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds