Wall clock time and date at job start Tue Mar 31 2020 13:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48500 * 109.47047 * 90.00072 * 3 2 1 5 5 H 1.48495 * 109.47721 * 210.00609 * 3 2 1 6 6 H 1.48498 * 109.47273 * 330.00665 * 3 2 1 7 7 C 1.40055 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99968 * 179.97438 * 7 2 1 9 9 C 1.41565 * 120.00207 * 359.97438 * 7 2 1 10 10 N 1.33450 * 119.23909 * 359.73398 * 9 7 2 11 11 C 1.32175 * 120.86031 * 179.71675 * 10 9 7 12 12 Cl 1.73605 * 120.33666 * 180.29658 * 11 10 9 13 13 C 1.38845 * 119.32298 * 0.54114 * 11 10 9 14 14 C 1.39999 * 118.59387 * 359.73495 * 13 11 10 15 15 N 1.38542 * 120.44753 * 179.97438 * 14 13 11 16 16 C 1.46496 * 120.00288 * 0.02562 * 15 14 13 17 17 C 1.52993 * 109.47118 * 179.97438 * 16 15 14 18 18 C 1.54264 * 112.65863 * 298.44927 * 17 16 15 19 19 N 1.49174 * 104.42124 * 212.05407 * 18 17 16 20 20 C 1.48507 * 103.87490 * 40.64074 * 19 18 17 21 21 C 1.54266 * 104.74223 * 319.70539 * 20 19 18 22 22 H 1.09000 * 113.17312 * 147.34408 * 21 20 19 23 23 C 1.54390 * 108.77723 * 273.40392 * 21 20 19 24 24 O 1.44385 * 104.91966 * 87.14209 * 23 21 20 25 25 C 1.44379 * 105.25514 * 40.75684 * 24 23 21 26 26 N 1.32593 * 119.09929 * 359.97438 * 14 13 11 27 27 H 0.97001 * 119.99753 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.70149 * 179.75286 * 13 11 10 29 29 H 0.97002 * 119.99290 * 180.02562 * 15 14 13 30 30 H 1.09000 * 109.47379 * 300.01102 * 16 15 14 31 31 H 1.09002 * 109.46901 * 60.00349 * 16 15 14 32 32 H 1.08991 * 110.38268 * 331.77793 * 18 17 16 33 33 H 1.09002 * 110.38079 * 94.15159 * 18 17 16 34 34 H 1.00896 * 110.73611 * 159.86286 * 19 18 17 35 35 H 1.09005 * 110.38441 * 200.89222 * 20 19 18 36 36 H 1.08995 * 110.38432 * 78.52349 * 20 19 18 37 37 H 1.08999 * 110.34916 * 205.99727 * 23 21 20 38 38 H 1.08999 * 110.34962 * 328.17303 * 23 21 20 39 39 H 1.08999 * 110.35067 * 200.37903 * 25 24 23 40 40 H 1.09003 * 110.34941 * 78.10150 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0463 1.4001 5 1 3.5384 1.4403 -0.7001 6 1 1.4384 2.6527 -0.6999 7 6 2.0072 -1.2129 -0.0005 8 1 3.0872 -1.2129 -0.0010 9 6 1.2994 -2.4389 -0.0005 10 7 -0.0350 -2.4213 0.0054 11 6 -0.7279 -3.5468 0.0000 12 17 -2.4636 -3.5079 0.0000 13 6 -0.0536 -4.7605 -0.0006 14 6 1.3463 -4.7492 -0.0011 15 7 2.0580 -5.9378 -0.0012 16 6 1.3458 -7.2180 -0.0013 17 6 2.3584 -8.3649 -0.0020 18 6 3.2597 -8.3612 -1.2539 19 7 3.5508 -9.8023 -1.5064 20 6 2.2547 -10.4785 -1.2452 21 6 1.6835 -9.7657 -0.0021 22 1 0.5949 -9.7105 -0.0017 23 6 2.2456 -10.4475 1.2639 24 8 3.4982 -9.7773 1.5220 25 6 3.2416 -8.3801 1.2643 26 7 1.9818 -3.5854 -0.0015 27 1 -0.4850 0.8401 0.0004 28 1 -0.5976 -5.6935 -0.0010 29 1 3.0279 -5.9223 -0.0011 30 1 0.7200 -7.2858 0.8886 31 1 0.7202 -7.2857 -0.8913 32 1 2.7369 -7.9092 -2.0967 33 1 4.1883 -7.8276 -1.0516 34 1 3.8474 -9.9451 -2.4602 35 1 2.4137 -11.5365 -1.0365 36 1 1.5839 -10.3550 -2.0954 37 1 1.5629 -10.3111 2.1027 38 1 2.4124 -11.5089 1.0805 39 1 4.1765 -7.8506 1.0806 40 1 2.7094 -7.9314 2.1031 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163147954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:54 Heat of formation + Delta-G solvation = 9.606845 kcal Electronic energy + Delta-G solvation = -25064.219871 eV Core-core repulsion = 21325.859020 eV Total energy + Delta-G solvation = -3738.360850 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86649 -39.04388 -36.39028 -35.79539 -35.49358 -33.60459 -31.92903 -30.90240 -30.80417 -28.98866 -26.48316 -26.15384 -25.38329 -23.96990 -22.19803 -21.77886 -20.85118 -19.53003 -18.01345 -17.25191 -16.27541 -16.21976 -15.80520 -15.44310 -15.41438 -14.90871 -14.32902 -14.21881 -13.96034 -13.84947 -13.73319 -13.37403 -13.16316 -12.98062 -12.80415 -12.10476 -11.69574 -11.62766 -11.46742 -11.40755 -11.18602 -11.16529 -10.95149 -10.87602 -10.85315 -10.41103 -10.23311 -9.99631 -9.76316 -9.15885 -9.06950 -8.79859 -8.30332 -7.52817 -7.22701 -6.60351 -4.83746 2.48897 2.93332 2.93420 3.04090 3.07702 3.11678 3.59288 3.77363 3.85786 4.08210 4.20086 4.30581 4.58433 4.69553 4.78091 4.83390 4.97514 5.18878 5.30961 5.40840 5.50378 5.53924 5.54368 5.57940 5.68727 5.73336 5.75362 5.84356 5.87792 6.04677 6.29665 6.37154 6.42265 6.72296 6.77638 6.88355 7.03527 7.08986 7.64694 8.07000 8.14256 8.48267 8.55547 9.00906 10.05264 10.19974 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.003180 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.949886 B = 8801.852401 C = 9847.871131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.065 3.935 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.096 0.904 9 C 0.434 3.566 10 N -0.527 5.527 11 C 0.269 3.731 12 Cl -0.083 7.083 13 C -0.407 4.407 14 C 0.456 3.544 15 N -0.728 5.728 16 C 0.160 3.840 17 C -0.105 4.105 18 C 0.047 3.953 19 N -0.653 5.653 20 C 0.043 3.957 21 C -0.120 4.120 22 H 0.101 0.899 23 C 0.058 3.942 24 O -0.359 6.359 25 C 0.064 3.936 26 N -0.640 5.640 27 H 0.277 0.723 28 H 0.109 0.891 29 H 0.397 0.603 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.335 0.665 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 -15.604 -1.271 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.163 4.163 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.183 1.183 6 H -0.200 1.200 7 C -0.428 4.428 8 H 0.114 0.886 9 C 0.199 3.801 10 N -0.248 5.248 11 C 0.088 3.912 12 Cl -0.055 7.055 13 C -0.440 4.440 14 C 0.209 3.791 15 N -0.366 5.366 16 C 0.034 3.966 17 C -0.106 4.106 18 C -0.082 4.082 19 N -0.281 5.281 20 C -0.086 4.086 21 C -0.139 4.139 22 H 0.119 0.881 23 C -0.020 4.020 24 O -0.278 6.278 25 C -0.013 4.013 26 N -0.370 5.370 27 H 0.089 0.911 28 H 0.127 0.873 29 H 0.232 0.768 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.150 0.850 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.146 -14.902 -0.554 15.066 hybrid contribution -0.943 0.251 -0.931 1.348 sum 1.203 -14.651 -1.485 14.775 Atomic orbital electron populations 1.70147 1.07253 1.28424 1.26357 1.26135 0.95056 1.01466 0.93655 0.86121 0.80331 0.79828 0.79415 1.19189 1.18274 1.19967 1.19369 0.94781 0.87286 1.41395 0.88576 1.19457 0.83558 0.89906 0.87207 1.68595 1.08195 1.25629 1.22397 1.21445 0.85343 0.90797 0.93605 1.98295 1.11686 1.98824 1.96669 1.20889 0.93151 0.97107 1.32814 1.18087 0.87324 0.86270 0.87430 1.43961 1.07856 1.01474 1.83291 1.20994 0.93059 0.80959 1.01554 1.22859 0.95870 0.94630 0.97231 1.23054 0.98971 0.90217 0.95950 1.64093 1.27031 1.07332 1.29628 1.22915 0.90530 0.99053 0.96136 1.23296 1.00412 0.93684 0.96543 0.88075 1.23348 0.86220 0.97517 0.94871 1.89140 1.30866 1.18478 1.89271 1.23373 0.99439 0.83822 0.94647 1.68219 1.40077 0.96915 1.31825 0.91131 0.87259 0.76789 0.91886 0.92099 0.93173 0.89730 0.84993 0.89878 0.94034 0.92577 0.89132 0.88907 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.23 11.42 55.55 0.63 -17.60 16 2 C 0.06 1.61 5.50 -17.36 -0.10 1.51 16 3 Si 0.92 18.11 29.56 -169.99 -5.02 13.09 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 7 C -0.39 -10.46 9.37 -37.63 -0.35 -10.82 16 8 H 0.10 2.44 7.85 -52.48 -0.41 2.03 16 9 C 0.43 11.99 7.37 -158.35 -1.17 10.83 16 10 N -0.53 -14.51 7.86 -9.83 -0.08 -14.59 16 11 C 0.27 6.59 7.33 -17.18 -0.13 6.47 16 12 Cl -0.08 -1.73 29.15 -51.86 -1.51 -3.24 16 13 C -0.41 -8.95 9.23 -38.70 -0.36 -9.31 16 14 C 0.46 10.00 7.71 -154.98 -1.19 8.80 16 15 N -0.73 -11.99 5.39 -60.27 -0.32 -12.31 16 16 C 0.16 2.05 3.96 -4.05 -0.02 2.04 16 17 C -0.10 -1.12 0.71 -151.80 -0.11 -1.22 16 18 C 0.05 0.50 6.03 -1.90 -0.01 0.49 16 19 N -0.65 -6.35 7.51 -109.36 -0.82 -7.18 16 20 C 0.04 0.36 6.86 -2.27 -0.02 0.35 16 21 C -0.12 -1.08 3.85 -87.91 -0.34 -1.42 16 22 H 0.10 0.79 7.96 -51.93 -0.41 0.37 16 23 C 0.06 0.54 7.05 37.89 0.27 0.81 16 24 O -0.36 -4.51 11.50 -35.23 -0.41 -4.91 16 25 C 0.06 0.75 6.26 37.89 0.24 0.99 16 26 N -0.64 -16.26 10.39 -11.90 -0.12 -16.38 16 27 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 28 H 0.11 2.10 6.85 -52.49 -0.36 1.74 16 29 H 0.40 6.19 8.11 -40.82 -0.33 5.86 16 30 H 0.06 0.82 7.97 -51.93 -0.41 0.41 16 31 H 0.06 0.79 7.97 -51.93 -0.41 0.38 16 32 H 0.05 0.55 7.99 -51.93 -0.41 0.14 16 33 H 0.08 0.93 7.54 -51.93 -0.39 0.54 16 34 H 0.34 2.73 8.92 -39.29 -0.35 2.38 16 35 H 0.08 0.63 7.51 -51.93 -0.39 0.24 16 36 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.74 7.50 -51.93 -0.39 0.35 16 39 H 0.09 1.08 7.54 -51.93 -0.39 0.69 16 40 H 0.06 0.74 7.99 -51.93 -0.41 0.32 16 LS Contribution 341.58 15.07 5.15 5.15 Total: -1.00 -30.30 341.58 -10.85 -41.15 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.07 Total: 7.31 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -3.28 Total: 9.51 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -0.71 Total: -68.05 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.41 Total: -4.91 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.02 Total: 13.09 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -1.51 Total: -3.24 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.30 -10.85 -41.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163147954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.758 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds