Wall clock time and date at job start Tue Mar 31 2020 13:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48500 * 109.47047 * 90.00072 * 3 2 1 5 5 H 1.48495 * 109.47721 * 210.00609 * 3 2 1 6 6 H 1.48498 * 109.47273 * 330.00665 * 3 2 1 7 7 C 1.40055 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99968 * 179.97438 * 7 2 1 9 9 C 1.41565 * 120.00207 * 359.97438 * 7 2 1 10 10 N 1.33450 * 119.23909 * 359.73398 * 9 7 2 11 11 C 1.32175 * 120.86031 * 179.71675 * 10 9 7 12 12 Cl 1.73605 * 120.33666 * 180.29658 * 11 10 9 13 13 C 1.38845 * 119.32298 * 0.54114 * 11 10 9 14 14 C 1.39999 * 118.59387 * 359.73495 * 13 11 10 15 15 N 1.38542 * 120.44753 * 179.97438 * 14 13 11 16 16 C 1.46496 * 120.00288 * 0.02562 * 15 14 13 17 17 C 1.52993 * 109.47118 * 179.97438 * 16 15 14 18 18 C 1.54264 * 112.65863 * 298.44927 * 17 16 15 19 19 N 1.49174 * 104.42124 * 212.05407 * 18 17 16 20 20 C 1.48507 * 103.87490 * 40.64074 * 19 18 17 21 21 C 1.54266 * 104.74223 * 319.70539 * 20 19 18 22 22 H 1.09000 * 113.17312 * 147.34408 * 21 20 19 23 23 C 1.54390 * 108.77723 * 273.40392 * 21 20 19 24 24 O 1.44385 * 104.91966 * 87.14209 * 23 21 20 25 25 C 1.44379 * 105.25514 * 40.75684 * 24 23 21 26 26 N 1.32593 * 119.09929 * 359.97438 * 14 13 11 27 27 H 0.97001 * 119.99753 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.70149 * 179.75286 * 13 11 10 29 29 H 0.97002 * 119.99290 * 180.02562 * 15 14 13 30 30 H 1.09000 * 109.47379 * 300.01102 * 16 15 14 31 31 H 1.09002 * 109.46901 * 60.00349 * 16 15 14 32 32 H 1.08991 * 110.38268 * 331.77793 * 18 17 16 33 33 H 1.09002 * 110.38079 * 94.15159 * 18 17 16 34 34 H 1.00896 * 110.73611 * 159.86286 * 19 18 17 35 35 H 1.09005 * 110.38441 * 200.89222 * 20 19 18 36 36 H 1.08995 * 110.38432 * 78.52349 * 20 19 18 37 37 H 1.08999 * 110.34916 * 205.99727 * 23 21 20 38 38 H 1.08999 * 110.34962 * 328.17303 * 23 21 20 39 39 H 1.08999 * 110.35067 * 200.37903 * 25 24 23 40 40 H 1.09003 * 110.34941 * 78.10150 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0463 1.4001 5 1 3.5384 1.4403 -0.7001 6 1 1.4384 2.6527 -0.6999 7 6 2.0072 -1.2129 -0.0005 8 1 3.0872 -1.2129 -0.0010 9 6 1.2994 -2.4389 -0.0005 10 7 -0.0350 -2.4213 0.0054 11 6 -0.7279 -3.5468 0.0000 12 17 -2.4636 -3.5079 0.0000 13 6 -0.0536 -4.7605 -0.0006 14 6 1.3463 -4.7492 -0.0011 15 7 2.0580 -5.9378 -0.0012 16 6 1.3458 -7.2180 -0.0013 17 6 2.3584 -8.3649 -0.0020 18 6 3.2597 -8.3612 -1.2539 19 7 3.5508 -9.8023 -1.5064 20 6 2.2547 -10.4785 -1.2452 21 6 1.6835 -9.7657 -0.0021 22 1 0.5949 -9.7105 -0.0017 23 6 2.2456 -10.4475 1.2639 24 8 3.4982 -9.7773 1.5220 25 6 3.2416 -8.3801 1.2643 26 7 1.9818 -3.5854 -0.0015 27 1 -0.4850 0.8401 0.0004 28 1 -0.5976 -5.6935 -0.0010 29 1 3.0279 -5.9223 -0.0011 30 1 0.7200 -7.2858 0.8886 31 1 0.7202 -7.2857 -0.8913 32 1 2.7369 -7.9092 -2.0967 33 1 4.1883 -7.8276 -1.0516 34 1 3.8474 -9.9451 -2.4602 35 1 2.4137 -11.5365 -1.0365 36 1 1.5839 -10.3550 -2.0954 37 1 1.5629 -10.3111 2.1027 38 1 2.4124 -11.5089 1.0805 39 1 4.1765 -7.8506 1.0806 40 1 2.7094 -7.9314 2.1031 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163147954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:53 Heat of formation + Delta-G solvation = -12.348299 kcal Electronic energy + Delta-G solvation = -25065.171917 eV Core-core repulsion = 21325.859020 eV Total energy + Delta-G solvation = -3739.312897 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74312 -40.81741 -37.59326 -37.31079 -36.82470 -35.36006 -33.47209 -32.40436 -31.66140 -30.50439 -28.34161 -26.96538 -26.55548 -24.79998 -23.98516 -23.36754 -21.79446 -20.44432 -19.73917 -18.55032 -17.95492 -17.31454 -16.80488 -16.54644 -16.45624 -16.31806 -15.82641 -15.59868 -15.36790 -15.07412 -14.93431 -14.63203 -14.50866 -14.41191 -13.78307 -13.21104 -13.15025 -13.03140 -12.75672 -12.73291 -12.44948 -12.39278 -12.05771 -12.02417 -11.90726 -11.83655 -11.80309 -11.52488 -10.93296 -10.89299 -10.62995 -10.11939 -9.53280 -9.41950 -8.83411 -8.43464 -6.79223 0.64276 1.13769 1.14325 1.42988 1.53948 1.59052 2.19330 2.31690 2.75378 2.94545 3.27946 3.32220 3.51836 3.83103 3.88072 3.91492 4.03476 4.19208 4.23943 4.43134 4.45993 4.51074 4.60430 4.62497 4.71197 4.73240 4.78562 4.82119 4.85080 4.89539 4.91503 4.97150 5.01703 5.12628 5.32811 5.68058 5.90084 6.00772 6.17014 6.36994 6.48006 6.67554 6.73495 7.22117 8.20220 8.36916 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.003180 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.949886 B = 8801.852401 C = 9847.871131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.025 3.975 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.255 1.255 6 H -0.265 1.265 7 C -0.428 4.428 8 H 0.095 0.905 9 C 0.409 3.591 10 N -0.564 5.564 11 C 0.246 3.754 12 Cl -0.058 7.058 13 C -0.398 4.398 14 C 0.451 3.549 15 N -0.712 5.712 16 C 0.160 3.840 17 C -0.097 4.097 18 C 0.049 3.951 19 N -0.663 5.663 20 C 0.043 3.957 21 C -0.114 4.114 22 H 0.119 0.881 23 C 0.052 3.948 24 O -0.381 6.381 25 C 0.064 3.936 26 N -0.664 5.664 27 H 0.285 0.715 28 H 0.139 0.861 29 H 0.402 0.598 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.344 0.656 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 -16.905 -1.517 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.199 4.199 3 Si 0.818 3.182 4 H -0.185 1.185 5 H -0.178 1.178 6 H -0.189 1.189 7 C -0.463 4.463 8 H 0.113 0.887 9 C 0.172 3.828 10 N -0.286 5.286 11 C 0.067 3.933 12 Cl -0.030 7.030 13 C -0.431 4.431 14 C 0.203 3.797 15 N -0.348 5.348 16 C 0.036 3.964 17 C -0.098 4.098 18 C -0.080 4.080 19 N -0.292 5.292 20 C -0.086 4.086 21 C -0.134 4.134 22 H 0.137 0.863 23 C -0.024 4.024 24 O -0.300 6.300 25 C -0.013 4.013 26 N -0.396 5.396 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.237 0.763 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.160 0.840 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.950 -16.299 -0.805 16.435 hybrid contribution -0.929 0.420 -0.845 1.324 sum 1.020 -15.879 -1.650 15.997 Atomic orbital electron populations 1.70225 1.08923 1.29807 1.27074 1.27063 0.95833 1.04631 0.92404 0.84952 0.78826 0.74740 0.79643 1.18512 1.17830 1.18887 1.19700 0.94997 0.88405 1.43228 0.88710 1.19843 0.84209 0.90992 0.87714 1.68578 1.08457 1.27161 1.24440 1.21916 0.86694 0.91147 0.93577 1.98286 1.09400 1.98797 1.96554 1.21164 0.93319 0.97500 1.31120 1.18428 0.87947 0.86926 0.86447 1.44083 1.08153 1.01114 1.81453 1.21195 0.93563 0.79666 1.02024 1.22726 0.95430 0.94850 0.96842 1.22973 0.98465 0.90951 0.95640 1.64082 1.27996 1.06600 1.30482 1.22986 0.90004 0.99421 0.96164 1.23353 1.01330 0.92038 0.96662 0.86293 1.23556 0.85342 0.98112 0.95422 1.89120 1.32613 1.18724 1.89505 1.23333 0.99317 0.83797 0.94865 1.68253 1.40499 0.97632 1.33171 0.90457 0.84300 0.76259 0.91333 0.91411 0.93603 0.90616 0.84040 0.88734 0.92975 0.91693 0.87709 0.89491 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.22 11.42 21.84 0.25 -38.97 16 2 C 0.03 1.27 5.50 85.30 0.47 1.73 16 3 Si 1.00 37.36 29.56 68.60 2.03 39.38 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 6 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 7 C -0.43 -23.48 9.37 23.53 0.22 -23.26 16 8 H 0.09 4.98 7.85 -2.91 -0.02 4.96 16 9 C 0.41 23.26 7.37 135.16 1.00 24.26 16 10 N -0.56 -31.74 7.86 -185.02 -1.45 -33.20 16 11 C 0.25 12.05 7.33 84.79 0.62 12.67 16 12 Cl -0.06 -2.41 29.15 -2.72 -0.08 -2.49 16 13 C -0.40 -17.20 9.23 22.84 0.21 -16.99 16 14 C 0.45 19.64 7.71 133.37 1.03 20.67 16 15 N -0.71 -22.74 5.39 -344.58 -1.86 -24.60 16 16 C 0.16 3.76 3.96 86.38 0.34 4.10 16 17 C -0.10 -1.89 0.71 -50.43 -0.04 -1.93 16 18 C 0.05 0.97 6.03 86.29 0.52 1.49 16 19 N -0.66 -11.59 7.51 -499.90 -3.76 -15.35 16 20 C 0.04 0.61 6.86 86.42 0.59 1.20 16 21 C -0.11 -1.73 3.85 -9.04 -0.03 -1.76 16 22 H 0.12 1.41 7.96 -2.39 -0.02 1.39 16 23 C 0.05 0.86 7.05 72.45 0.51 1.37 16 24 O -0.38 -8.99 11.50 -148.98 -1.71 -10.70 16 25 C 0.06 1.42 6.26 72.46 0.45 1.87 16 26 N -0.66 -34.39 10.39 -191.56 -1.99 -36.38 16 27 H 0.28 13.55 8.29 -92.71 -0.77 12.78 16 28 H 0.14 5.01 6.85 -2.91 -0.02 4.99 16 29 H 0.40 12.32 8.11 -92.71 -0.75 11.57 16 30 H 0.07 1.60 7.97 -2.39 -0.02 1.58 16 31 H 0.07 1.57 7.97 -2.39 -0.02 1.55 16 32 H 0.05 0.94 7.99 -2.39 -0.02 0.92 16 33 H 0.08 1.62 7.54 -2.39 -0.02 1.60 16 34 H 0.34 4.97 8.92 -89.70 -0.80 4.17 16 35 H 0.09 1.13 7.51 -2.38 -0.02 1.11 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 1.41 7.50 -2.39 -0.02 1.40 16 39 H 0.09 1.99 7.54 -2.39 -0.02 1.98 16 40 H 0.06 1.29 7.99 -2.39 -0.02 1.27 16 Total: -1.00 -66.76 341.58 -3.13 -69.89 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.45 Total: 26.98 kcal Atomic # 6 Polarization: 19.54 SS G_CDS: 5.89 Total: 25.43 kcal Atomic # 7 Polarization: -139.69 SS G_CDS: -8.81 Total: -148.50 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -1.71 Total: -10.70 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.38 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.08 Total: -2.49 kcal Total: -66.76 -3.13 -69.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163147954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.540 kcal (2) G-P(sol) polarization free energy of solvation -66.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds