Wall clock time and date at job start Tue Mar 31 2020 13:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00593 * 2 1 4 4 H 1.48498 * 109.47346 * 240.00185 * 3 2 1 5 5 H 1.48497 * 109.46799 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47039 * 119.99773 * 3 2 1 7 7 C 1.37884 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99914 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00045 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.46964 * 110.99717 * 293.79912 * 10 9 7 12 12 C 1.53047 * 109.36263 * 176.81285 * 11 10 9 13 13 N 1.46952 * 109.36665 * 58.39986 * 12 11 10 14 14 C 1.38944 * 111.00194 * 176.80952 * 13 12 11 15 15 C 1.39369 * 120.60886 * 61.03062 * 14 13 12 16 16 Cl 1.73598 * 119.63410 * 359.97438 * 15 14 13 17 17 N 1.31630 * 120.72718 * 179.97438 * 15 14 13 18 18 C 1.31987 * 122.16814 * 0.02562 * 17 15 14 19 19 C 1.37858 * 121.14730 * 0.02562 * 18 17 15 20 20 C 1.40047 * 119.12016 * 359.71397 * 19 18 17 21 21 C 1.47722 * 120.97421 * 180.30113 * 20 19 18 22 22 N 1.34776 * 119.99590 * 5.34594 * 21 20 19 23 23 O 1.21568 * 120.00405 * 185.35131 * 21 20 19 24 24 C 1.46955 * 110.88021 * 300.67737 * 13 12 11 25 25 C 1.46952 * 111.00171 * 169.99917 * 10 9 7 26 26 H 0.97002 * 120.00006 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47544 * 59.99845 * 9 7 2 28 28 H 1.08997 * 109.47070 * 299.99603 * 9 7 2 29 29 H 1.09000 * 109.48576 * 296.77631 * 11 10 9 30 30 H 1.08994 * 109.48923 * 56.84258 * 11 10 9 31 31 H 1.09002 * 109.48750 * 298.43173 * 12 11 10 32 32 H 1.08997 * 109.50629 * 178.37856 * 12 11 10 33 33 H 1.07996 * 119.42665 * 179.97438 * 18 17 15 34 34 H 1.08001 * 120.43755 * 180.02562 * 19 18 17 35 35 H 0.96998 * 120.00654 * 0.02562 * 22 21 20 36 36 H 0.97001 * 119.99810 * 179.97438 * 22 21 20 37 37 H 1.08996 * 109.49249 * 299.34986 * 24 13 12 38 38 H 1.09009 * 109.50807 * 179.29558 * 24 13 12 39 39 H 1.09000 * 109.49267 * 303.15620 * 25 10 9 40 40 H 1.09002 * 109.48932 * 63.21992 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0017 10 7 2.2054 -3.6158 -0.0015 11 6 2.9694 -3.6558 -1.2563 12 6 4.0047 -4.7806 -1.1844 13 7 3.3198 -6.0589 -0.9472 14 6 4.2226 -7.1151 -0.9471 15 6 5.2565 -7.1648 -0.0138 16 17 5.4167 -5.8942 1.1582 17 7 6.1128 -8.1645 -0.0112 18 6 6.0381 -9.1559 -0.8792 19 6 5.0493 -9.1902 -1.8392 20 6 4.1075 -8.1547 -1.8848 21 6 3.0269 -8.1537 -2.8920 22 7 2.8713 -9.2100 -3.7145 23 8 2.2780 -7.2000 -2.9792 24 6 2.5559 -6.0190 0.3075 25 6 1.5205 -4.8941 0.2357 26 1 -0.4850 0.8401 0.0004 27 1 0.6245 -2.5563 -0.8919 28 1 0.6239 -2.5575 0.8880 29 1 2.2908 -3.8388 -2.0894 30 1 3.4774 -2.7027 -1.4032 31 1 4.6997 -4.5835 -0.3681 32 1 4.5533 -4.8310 -2.1249 33 1 6.7646 -9.9538 -0.8372 34 1 4.9987 -10.0073 -2.5436 35 1 3.4686 -9.9711 -3.6448 36 1 2.1616 -9.2095 -4.3756 37 1 3.2344 -5.8360 1.1407 38 1 2.0478 -6.9720 0.4549 39 1 0.9721 -4.8440 1.1764 40 1 0.8255 -5.0912 -0.5806 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165058434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:39 Heat of formation + Delta-G solvation = 32.982834 kcal Electronic energy + Delta-G solvation = -25734.450571 eV Core-core repulsion = 21997.103380 eV Total energy + Delta-G solvation = -3737.347191 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.22538 -39.04358 -38.56085 -36.81070 -35.31733 -34.10628 -32.64887 -32.15431 -30.43269 -30.39510 -27.55218 -25.29614 -24.95692 -23.13473 -22.87523 -21.37347 -21.21486 -19.37142 -18.59218 -17.58129 -16.85815 -16.47389 -16.25737 -15.78654 -15.34021 -14.99015 -14.60876 -14.55086 -14.40594 -14.09539 -13.98387 -13.81883 -13.50384 -13.20932 -12.63111 -12.10793 -12.01143 -11.74684 -11.25995 -11.02408 -10.84450 -10.74245 -10.56631 -10.48471 -10.42286 -10.28334 -10.04610 -10.01227 -9.86879 -9.68415 -9.13373 -9.07791 -8.37516 -8.06063 -7.13015 -5.96294 -3.97349 0.28388 0.49038 1.56823 2.66877 3.13343 3.37777 3.38755 3.41438 3.44524 3.67225 4.15353 4.32912 4.39203 4.47769 4.56345 4.84125 5.02345 5.24383 5.30587 5.39166 5.50078 5.55706 5.71943 5.86406 5.87992 5.98153 6.10279 6.22389 6.51459 6.54911 6.69124 6.78476 7.03707 7.07121 7.23054 7.34584 7.39963 7.46027 7.86421 8.09715 8.16171 8.28676 8.62730 9.09904 9.66404 11.14621 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.003737 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.142225 B = 7491.229429 C = 8395.582014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.073 3.927 12 C 0.048 3.952 13 N -0.480 5.480 14 C 0.129 3.871 15 C 0.136 3.864 16 Cl 0.002 6.998 17 N -0.458 5.458 18 C 0.102 3.898 19 C -0.138 4.138 20 C -0.068 4.068 21 C 0.556 3.444 22 N -0.857 5.857 23 O -0.474 6.474 24 C 0.053 3.947 25 C 0.062 3.938 26 H 0.261 0.739 27 H -0.008 1.008 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.170 0.830 34 H 0.147 0.853 35 H 0.396 0.604 36 H 0.407 0.593 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.833 -23.804 -5.056 26.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.056 4.056 12 C -0.077 4.077 13 N -0.202 5.202 14 C 0.029 3.971 15 C -0.032 4.032 16 Cl 0.031 6.969 17 N -0.170 5.170 18 C -0.054 4.054 19 C -0.159 4.159 20 C -0.080 4.080 21 C 0.338 3.662 22 N -0.424 5.424 23 O -0.345 6.345 24 C -0.073 4.073 25 C -0.068 4.068 26 H 0.071 0.929 27 H 0.010 0.990 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.187 0.813 34 H 0.165 0.835 35 H 0.225 0.775 36 H 0.238 0.762 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.889 -22.774 -4.238 25.597 hybrid contribution -0.146 0.443 -0.798 0.925 sum 10.743 -22.331 -5.037 25.287 Atomic orbital electron populations 1.69951 1.06047 1.26777 1.51072 1.24977 0.94832 0.99216 0.95535 0.86583 0.79445 0.82893 0.78604 1.20295 1.21415 1.20228 1.21122 0.93402 0.89974 1.49963 0.91981 1.19688 0.90046 0.87196 0.96157 1.62298 1.28021 1.02632 1.33139 1.21919 0.95317 0.96709 0.91617 1.22626 0.97058 0.86985 1.01046 1.59581 1.22898 1.01728 1.35948 1.19638 0.91362 0.93870 0.92182 1.23210 0.93990 0.92550 0.93469 1.98449 1.96647 1.45282 1.56510 1.66792 1.25204 1.00922 1.24103 1.22548 0.97211 0.95459 0.90171 1.22386 0.95079 0.98425 1.00015 1.20373 0.96795 0.94308 0.96564 1.17799 0.84168 0.83136 0.81070 1.43750 1.37934 1.20932 1.39749 1.91000 1.42809 1.32865 1.67803 1.22487 0.96410 0.99212 0.89145 1.21992 0.94455 0.89622 1.00686 0.92938 0.98973 0.95223 0.94858 0.89351 0.92046 0.91425 0.81255 0.83539 0.77520 0.76180 0.92207 0.91513 0.90798 0.94716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.47 8.47 -34.44 -0.29 -14.76 16 8 H 0.06 1.75 7.13 -52.48 -0.37 1.37 16 9 C 0.19 5.22 4.72 -4.98 -0.02 5.20 16 10 N -0.54 -12.07 4.70 -235.91 -1.11 -13.18 16 11 C 0.07 1.53 5.43 -3.76 -0.02 1.51 16 12 C 0.05 0.85 5.23 -3.77 -0.02 0.83 16 13 N -0.48 -7.94 2.78 -170.55 -0.47 -8.42 16 14 C 0.13 1.82 4.73 -83.37 -0.39 1.42 16 15 C 0.14 1.85 6.95 -17.22 -0.12 1.73 16 16 Cl 0.00 0.03 22.89 -51.86 -1.19 -1.16 16 17 N -0.46 -5.44 10.30 -10.24 -0.11 -5.54 16 18 C 0.10 0.81 11.15 -17.62 -0.20 0.61 16 19 C -0.14 -0.97 9.59 -39.04 -0.37 -1.34 16 20 C -0.07 -0.76 5.92 -104.50 -0.62 -1.38 16 21 C 0.56 6.54 8.05 -12.39 -0.10 6.44 16 22 N -0.86 -5.55 8.83 30.50 0.27 -5.29 16 23 O -0.47 -8.00 16.03 5.31 0.09 -7.92 16 24 C 0.05 0.89 5.25 -3.77 -0.02 0.87 16 25 C 0.06 1.21 5.61 -3.77 -0.02 1.19 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 28 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.94 6.79 -51.93 -0.35 1.59 16 31 H 0.06 1.07 4.89 -51.93 -0.25 0.81 16 32 H 0.07 1.12 8.13 -51.93 -0.42 0.69 16 33 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.15 0.37 6.57 -52.49 -0.34 0.02 16 35 H 0.40 1.14 6.99 -40.82 -0.29 0.86 16 36 H 0.41 2.29 8.93 -40.82 -0.36 1.93 16 37 H 0.06 0.99 5.08 -51.93 -0.26 0.73 16 38 H 0.07 1.02 8.13 -51.92 -0.42 0.60 16 39 H 0.07 1.39 8.07 -51.93 -0.42 0.97 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -35.12 335.74 -8.79 -43.90 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.74 Total: -1.80 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -2.30 Total: 3.82 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.68 Total: -58.94 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.19 Total: -1.16 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.12 -8.79 -43.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165058434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.887 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds