Wall clock time and date at job start Tue Mar 31 2020 13:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00593 * 2 1 4 4 H 1.48498 * 109.47346 * 240.00185 * 3 2 1 5 5 H 1.48497 * 109.46799 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47039 * 119.99773 * 3 2 1 7 7 C 1.37884 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99914 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00045 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.46964 * 110.99717 * 293.79912 * 10 9 7 12 12 C 1.53047 * 109.36263 * 176.81285 * 11 10 9 13 13 N 1.46952 * 109.36665 * 58.39986 * 12 11 10 14 14 C 1.38944 * 111.00194 * 176.80952 * 13 12 11 15 15 C 1.39369 * 120.60886 * 61.03062 * 14 13 12 16 16 Cl 1.73598 * 119.63410 * 359.97438 * 15 14 13 17 17 N 1.31630 * 120.72718 * 179.97438 * 15 14 13 18 18 C 1.31987 * 122.16814 * 0.02562 * 17 15 14 19 19 C 1.37858 * 121.14730 * 0.02562 * 18 17 15 20 20 C 1.40047 * 119.12016 * 359.71397 * 19 18 17 21 21 C 1.47722 * 120.97421 * 180.30113 * 20 19 18 22 22 N 1.34776 * 119.99590 * 5.34594 * 21 20 19 23 23 O 1.21568 * 120.00405 * 185.35131 * 21 20 19 24 24 C 1.46955 * 110.88021 * 300.67737 * 13 12 11 25 25 C 1.46952 * 111.00171 * 169.99917 * 10 9 7 26 26 H 0.97002 * 120.00006 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47544 * 59.99845 * 9 7 2 28 28 H 1.08997 * 109.47070 * 299.99603 * 9 7 2 29 29 H 1.09000 * 109.48576 * 296.77631 * 11 10 9 30 30 H 1.08994 * 109.48923 * 56.84258 * 11 10 9 31 31 H 1.09002 * 109.48750 * 298.43173 * 12 11 10 32 32 H 1.08997 * 109.50629 * 178.37856 * 12 11 10 33 33 H 1.07996 * 119.42665 * 179.97438 * 18 17 15 34 34 H 1.08001 * 120.43755 * 180.02562 * 19 18 17 35 35 H 0.96998 * 120.00654 * 0.02562 * 22 21 20 36 36 H 0.97001 * 119.99810 * 179.97438 * 22 21 20 37 37 H 1.08996 * 109.49249 * 299.34986 * 24 13 12 38 38 H 1.09009 * 109.50807 * 179.29558 * 24 13 12 39 39 H 1.09000 * 109.49267 * 303.15620 * 25 10 9 40 40 H 1.09002 * 109.48932 * 63.21992 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0017 10 7 2.2054 -3.6158 -0.0015 11 6 2.9694 -3.6558 -1.2563 12 6 4.0047 -4.7806 -1.1844 13 7 3.3198 -6.0589 -0.9472 14 6 4.2226 -7.1151 -0.9471 15 6 5.2565 -7.1648 -0.0138 16 17 5.4167 -5.8942 1.1582 17 7 6.1128 -8.1645 -0.0112 18 6 6.0381 -9.1559 -0.8792 19 6 5.0493 -9.1902 -1.8392 20 6 4.1075 -8.1547 -1.8848 21 6 3.0269 -8.1537 -2.8920 22 7 2.8713 -9.2100 -3.7145 23 8 2.2780 -7.2000 -2.9792 24 6 2.5559 -6.0190 0.3075 25 6 1.5205 -4.8941 0.2357 26 1 -0.4850 0.8401 0.0004 27 1 0.6245 -2.5563 -0.8919 28 1 0.6239 -2.5575 0.8880 29 1 2.2908 -3.8388 -2.0894 30 1 3.4774 -2.7027 -1.4032 31 1 4.6997 -4.5835 -0.3681 32 1 4.5533 -4.8310 -2.1249 33 1 6.7646 -9.9538 -0.8372 34 1 4.9987 -10.0073 -2.5436 35 1 3.4686 -9.9711 -3.6448 36 1 2.1616 -9.2095 -4.3756 37 1 3.2344 -5.8360 1.1407 38 1 2.0478 -6.9720 0.4549 39 1 0.9721 -4.8440 1.1764 40 1 0.8255 -5.0912 -0.5806 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165058434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:38 Heat of formation + Delta-G solvation = 3.895144 kcal Electronic energy + Delta-G solvation = -25735.711908 eV Core-core repulsion = 21997.103380 eV Total energy + Delta-G solvation = -3738.608528 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.15213 -40.12803 -39.73036 -37.85699 -36.86589 -34.94668 -34.66542 -33.06202 -31.97578 -31.57430 -29.30874 -26.87634 -25.92453 -24.64760 -24.16734 -23.15572 -22.03442 -20.90285 -19.36524 -18.51680 -18.43007 -18.00148 -17.27096 -16.72666 -16.62044 -16.43979 -16.04003 -15.72377 -15.62137 -15.45789 -15.18239 -15.10600 -14.97055 -14.65088 -14.00928 -13.57520 -13.49204 -13.22042 -13.07579 -12.75155 -12.59191 -12.30060 -12.15557 -12.11538 -11.83883 -11.63101 -11.43292 -11.24144 -10.99338 -10.93582 -10.61291 -10.59569 -9.97601 -9.30536 -9.03094 -8.20288 -6.30762 -0.52132 -0.33307 0.63483 1.40177 1.44191 1.51928 1.84444 2.39027 2.40115 2.55933 2.58430 3.11341 3.23996 3.46766 3.48927 3.67518 3.88871 3.98116 4.10063 4.13589 4.22082 4.35302 4.42195 4.56333 4.58577 4.70717 4.73321 4.90256 4.97299 5.00597 5.19148 5.24609 5.27422 5.63042 5.75631 5.92211 6.02721 6.08134 6.30356 6.49111 6.53342 6.58369 6.84129 7.38558 7.38623 8.91155 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.003737 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.142225 B = 7491.229429 C = 8395.582014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.064 0.936 9 C 0.210 3.790 10 N -0.535 5.535 11 C 0.079 3.921 12 C 0.061 3.939 13 N -0.486 5.486 14 C 0.097 3.903 15 C 0.123 3.877 16 Cl -0.023 7.023 17 N -0.476 5.476 18 C 0.114 3.886 19 C -0.105 4.105 20 C -0.077 4.077 21 C 0.554 3.446 22 N -0.827 5.827 23 O -0.540 6.540 24 C 0.064 3.936 25 C 0.062 3.938 26 H 0.265 0.735 27 H -0.043 1.043 28 H 0.006 0.994 29 H 0.010 0.990 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.219 0.781 34 H 0.203 0.797 35 H 0.418 0.582 36 H 0.414 0.586 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.517 -26.803 -5.949 30.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.082 0.918 9 C 0.083 3.917 10 N -0.260 5.260 11 C -0.050 4.050 12 C -0.065 4.065 13 N -0.207 5.207 14 C -0.003 4.003 15 C -0.043 4.043 16 Cl 0.006 6.994 17 N -0.188 5.188 18 C -0.042 4.042 19 C -0.125 4.125 20 C -0.089 4.089 21 C 0.337 3.663 22 N -0.395 5.395 23 O -0.415 6.415 24 C -0.062 4.062 25 C -0.067 4.067 26 H 0.073 0.927 27 H -0.025 1.025 28 H 0.024 0.976 29 H 0.028 0.972 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.235 0.765 34 H 0.220 0.780 35 H 0.251 0.749 36 H 0.246 0.754 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 13.608 -25.854 -5.146 29.666 hybrid contribution -0.940 1.090 -0.622 1.568 sum 12.668 -24.764 -5.769 28.408 Atomic orbital electron populations 1.70091 1.07817 1.27981 1.51677 1.25935 0.95742 1.03241 0.94700 0.85413 0.78145 0.77766 0.79151 1.19209 1.20728 1.19221 1.21401 0.93592 0.90894 1.50248 0.91807 1.19351 0.90068 0.88947 0.93299 1.62243 1.27021 1.02782 1.33913 1.21839 0.95375 0.97814 0.89975 1.22400 0.95630 0.86760 1.01702 1.59419 1.23937 1.01882 1.35487 1.19675 0.91926 0.94318 0.94355 1.22941 0.94821 0.93074 0.93482 1.98429 1.96726 1.46798 1.57453 1.66823 1.24998 1.01410 1.25611 1.23479 0.97549 0.94801 0.88417 1.22949 0.92239 0.97703 0.99643 1.20524 0.97741 0.94794 0.95853 1.18011 0.83642 0.83266 0.81383 1.43502 1.37863 1.20024 1.38069 1.90989 1.45197 1.35509 1.69792 1.22335 0.95741 0.98238 0.89911 1.22046 0.95244 0.89405 0.99974 0.92662 1.02531 0.97566 0.97214 0.90831 0.91711 0.90489 0.76485 0.77967 0.74950 0.75369 0.91922 0.89923 0.90493 0.96611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.55 13.29 21.45 0.28 -58.27 16 2 C 0.00 0.10 5.46 84.66 0.46 0.57 16 3 Si 0.97 45.88 29.54 68.60 2.03 47.90 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.52 -31.13 8.47 25.60 0.22 -30.91 16 8 H 0.06 3.70 7.13 -2.91 -0.02 3.68 16 9 C 0.21 12.06 4.72 85.55 0.40 12.47 16 10 N -0.53 -25.66 4.70 -900.30 -4.23 -29.89 16 11 C 0.08 3.52 5.43 86.31 0.47 3.98 16 12 C 0.06 2.22 5.23 86.31 0.45 2.67 16 13 N -0.49 -16.41 2.78 -693.49 -1.93 -18.34 16 14 C 0.10 2.62 4.73 38.83 0.18 2.80 16 15 C 0.12 3.19 6.95 85.00 0.59 3.78 16 16 Cl -0.02 -0.67 22.89 -2.72 -0.06 -0.73 16 17 N -0.48 -9.86 10.30 -186.32 -1.92 -11.78 16 18 C 0.11 1.19 11.15 84.58 0.94 2.13 16 19 C -0.11 -0.89 9.59 22.62 0.22 -0.67 16 20 C -0.08 -1.50 5.92 -19.79 -0.12 -1.62 16 21 C 0.55 11.97 8.05 86.75 0.70 12.67 16 22 N -0.83 -7.80 8.83 -175.69 -1.55 -9.35 16 23 O -0.54 -18.43 16.03 -3.93 -0.06 -18.49 16 24 C 0.06 2.20 5.25 86.31 0.45 2.65 16 25 C 0.06 2.59 5.61 86.31 0.48 3.07 16 26 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 27 H -0.04 -2.72 8.12 -2.39 -0.02 -2.74 16 28 H 0.01 0.38 8.03 -2.39 -0.02 0.36 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 3.44 6.79 -2.39 -0.02 3.42 16 31 H 0.07 2.32 4.89 -2.39 -0.01 2.31 16 32 H 0.08 2.61 8.13 -2.39 -0.02 2.59 16 33 H 0.22 0.17 8.06 -2.91 -0.02 0.15 16 34 H 0.20 -0.63 6.57 -2.91 -0.02 -0.65 16 35 H 0.42 0.12 6.99 -92.71 -0.65 -0.53 16 36 H 0.41 3.49 8.93 -92.71 -0.83 2.66 16 37 H 0.06 2.14 5.08 -2.39 -0.01 2.12 16 38 H 0.08 2.56 8.13 -2.38 -0.02 2.54 16 39 H 0.08 3.09 8.07 -2.39 -0.02 3.07 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -83.22 335.74 -2.35 -85.57 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -0.36 Total: -0.22 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 5.46 Total: 13.60 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -9.35 Total: -127.63 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.06 Total: -18.49 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.06 Total: -0.73 kcal Total: -83.22 -2.35 -85.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165058434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.467 kcal (2) G-P(sol) polarization free energy of solvation -83.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds