Wall clock time and date at job start Tue Mar 31 2020 13:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00158 * 2 1 4 4 H 1.48503 * 109.46866 * 270.00004 * 3 2 1 5 5 H 1.48500 * 109.47034 * 29.99863 * 3 2 1 6 6 H 1.48501 * 109.47201 * 149.99995 * 3 2 1 7 7 C 1.37884 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99170 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00385 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.47358 * 175.56295 * 9 7 2 11 11 C 1.38326 * 110.99612 * 71.73364 * 10 9 7 12 12 N 1.32842 * 120.15223 * 60.73971 * 11 10 9 13 13 C 1.32006 * 119.99978 * 179.77041 * 12 11 10 14 14 C 1.38962 * 120.31012 * 0.51100 * 13 12 11 15 15 Cl 1.73605 * 119.84553 * 179.76789 * 14 13 12 16 16 N 1.31804 * 120.30549 * 359.74569 * 14 13 12 17 17 C 1.33062 * 119.99496 * 359.97438 * 16 14 13 18 18 C 1.47718 * 120.15579 * 180.02562 * 17 16 14 19 19 N 1.34777 * 119.99663 * 4.13285 * 18 17 16 20 20 O 1.21570 * 120.00463 * 184.13119 * 18 17 16 21 21 C 1.46891 * 111.00337 * 195.68643 * 10 9 7 22 22 C 1.54271 * 110.48550 * 176.99800 * 21 10 9 23 23 C 1.53883 * 106.63778 * 217.73587 * 22 21 10 24 24 C 1.54268 * 106.59808 * 359.97235 * 23 22 21 25 25 C 1.54888 * 104.19514 * 23.61361 * 24 23 22 26 26 H 0.97006 * 120.00236 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.47027 * 55.57144 * 9 7 2 28 28 H 1.08994 * 109.47266 * 295.57111 * 9 7 2 29 29 H 1.07998 * 119.84051 * 180.25981 * 13 12 11 30 30 H 0.96992 * 120.00214 * 0.02562 * 19 18 17 31 31 H 0.97006 * 119.99413 * 179.97438 * 19 18 17 32 32 H 1.09001 * 110.54398 * 299.60734 * 21 10 9 33 33 H 1.09003 * 110.03371 * 98.43027 * 22 21 10 34 34 H 1.08995 * 110.03329 * 337.04408 * 22 21 10 35 35 H 1.08994 * 110.03114 * 119.26092 * 23 22 21 36 36 H 1.09003 * 110.02824 * 240.64230 * 23 22 21 37 37 H 1.08999 * 110.48172 * 142.28418 * 24 23 22 38 38 H 1.08997 * 110.48983 * 264.93038 * 24 23 22 39 39 H 1.08999 * 110.75756 * 80.36515 * 25 24 23 40 40 H 1.08996 * 110.75675 * 203.55471 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5749 0.1055 11 6 3.7844 -3.2699 -1.0706 12 7 4.3425 -2.8561 -2.2028 13 6 4.1372 -3.5243 -3.3227 14 6 3.3298 -4.6552 -3.3265 15 17 3.0632 -5.5213 -4.8073 16 7 2.7659 -5.0737 -2.2111 17 6 2.9691 -4.4126 -1.0744 18 6 2.3393 -4.8788 0.1779 19 7 1.6252 -6.0218 0.1881 20 8 2.4650 -4.2315 1.1992 21 6 5.4216 -2.6024 0.4790 22 6 5.9040 -4.0564 0.6608 23 6 6.8805 -4.0512 1.8501 24 6 6.9585 -2.5938 2.3499 25 6 5.6298 -1.9569 1.8723 26 1 -0.4851 0.8401 -0.0004 27 1 3.8751 -0.6132 0.8466 28 1 3.8744 -0.7503 -0.9281 29 1 4.5957 -3.1880 -4.2408 30 1 1.5252 -6.5385 -0.6266 31 1 1.2120 -6.3281 1.0106 32 1 6.0245 -2.0916 -0.2719 33 1 6.4149 -4.3957 -0.2403 34 1 5.0564 -4.7068 0.8765 35 1 6.5063 -4.6984 2.6432 36 1 7.8650 -4.3889 1.5263 37 1 7.0252 -2.5666 3.4375 38 1 7.8099 -2.0818 1.9015 39 1 4.8126 -2.2184 2.5444 40 1 5.7283 -0.8746 1.7891 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166534338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:13 Heat of formation + Delta-G solvation = 24.444402 kcal Electronic energy + Delta-G solvation = -26490.007795 eV Core-core repulsion = 22752.290350 eV Total energy + Delta-G solvation = -3737.717446 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.30380 -38.54349 -38.43486 -36.78468 -35.52390 -33.96053 -32.91992 -32.46133 -30.42389 -28.71352 -28.07071 -26.24338 -25.55226 -23.55301 -21.46382 -21.06524 -20.00895 -19.67726 -17.99792 -17.90790 -16.99580 -16.53385 -16.10417 -15.74504 -15.40981 -15.30446 -14.71144 -14.31668 -13.96657 -13.77005 -13.54141 -13.30857 -13.04089 -12.38421 -12.24001 -12.09377 -11.73695 -11.68433 -11.46106 -11.07099 -11.00265 -10.88849 -10.84137 -10.78601 -10.43100 -10.33386 -10.26733 -9.90009 -9.79898 -9.39359 -9.25272 -9.16153 -8.75892 -8.58024 -7.72381 -6.04935 -4.01736 0.52922 1.01031 1.64049 3.08198 3.27812 3.35060 3.35972 3.57224 3.95333 4.00173 4.28652 4.41010 4.41654 4.61896 4.78959 4.92033 5.11271 5.24202 5.31705 5.41730 5.61868 5.67113 5.77815 5.81310 5.86922 5.96394 6.09059 6.14322 6.22032 6.43967 6.46268 6.63870 6.80430 6.85037 7.01298 7.16436 7.46092 7.58791 7.69793 7.75933 7.94065 8.58415 8.71303 9.05560 9.54783 11.08156 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.008985 B = 0.006439 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.569629 B = 4347.688291 C = 5694.407896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.871 3.129 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.164 3.836 10 N -0.450 5.450 11 C 0.357 3.643 12 N -0.459 5.459 13 C 0.111 3.889 14 C 0.097 3.903 15 Cl -0.023 7.023 16 N -0.407 5.407 17 C 0.070 3.930 18 C 0.574 3.426 19 N -0.850 5.850 20 O -0.459 6.459 21 C 0.084 3.916 22 C -0.122 4.122 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.112 4.112 26 H 0.263 0.737 27 H 0.045 0.955 28 H 0.001 0.999 29 H 0.176 0.824 30 H 0.403 0.597 31 H 0.403 0.597 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.308 -11.682 -3.718 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.698 3.302 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.543 4.543 8 H 0.098 0.902 9 C 0.041 3.959 10 N -0.174 5.174 11 C 0.127 3.873 12 N -0.176 5.176 13 C -0.053 4.053 14 C -0.072 4.072 15 Cl 0.005 6.995 16 N -0.127 5.127 17 C -0.075 4.075 18 C 0.354 3.646 19 N -0.416 5.416 20 O -0.327 6.327 21 C -0.023 4.023 22 C -0.160 4.160 23 C -0.153 4.153 24 C -0.160 4.160 25 C -0.150 4.150 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.193 0.807 30 H 0.232 0.768 31 H 0.233 0.767 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.047 -11.239 -2.791 16.004 hybrid contribution 0.281 0.873 -1.190 1.503 sum 11.328 -10.366 -3.981 15.863 Atomic orbital electron populations 1.69887 1.06081 1.26761 1.50817 1.24841 0.94721 0.98647 0.94866 0.86929 0.80503 0.84244 0.78531 1.20338 1.21019 1.18939 1.20983 0.88331 0.94928 1.50105 0.90160 1.20411 0.97497 0.81598 0.96430 1.60325 1.15807 1.18679 1.22579 1.20769 0.87923 0.89567 0.89053 1.68943 1.21521 1.28228 0.98952 1.23657 0.93988 0.89743 0.97955 1.22611 0.99762 0.95173 0.89682 1.98396 1.95702 1.76704 1.28690 1.67558 1.17771 1.29809 0.97525 1.21989 0.98769 0.94501 0.92202 1.17244 0.79402 0.81235 0.86695 1.43628 1.56241 1.26007 1.15735 1.91003 1.57121 1.53222 1.31345 1.22555 0.86834 0.95779 0.97148 1.22240 0.99100 0.96994 0.97673 1.22014 0.98473 0.97244 0.97602 1.22313 0.97749 0.95527 1.00405 1.22538 0.97470 0.99144 0.95806 0.92669 0.93699 0.98099 0.80706 0.76833 0.76658 0.93015 0.93113 0.90793 0.91757 0.92398 0.91604 0.92043 0.89372 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 21.67 27.56 -169.99 -4.68 16.99 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.25 6.42 56.52 0.36 -5.89 16 7 C -0.51 -14.59 9.42 -34.44 -0.32 -14.92 16 8 H 0.08 2.57 7.51 -52.49 -0.39 2.18 16 9 C 0.16 4.03 3.67 -4.98 -0.02 4.02 16 10 N -0.45 -9.59 2.24 -164.77 -0.37 -9.96 16 11 C 0.36 7.22 3.79 -154.83 -0.59 6.64 16 12 N -0.46 -8.54 9.60 -11.96 -0.11 -8.65 16 13 C 0.11 1.68 11.01 -17.21 -0.19 1.49 16 14 C 0.10 1.46 7.28 -17.30 -0.13 1.33 16 15 Cl -0.02 -0.27 29.12 -51.86 -1.51 -1.78 16 16 N -0.41 -6.77 9.69 -6.64 -0.06 -6.83 16 17 C 0.07 1.33 6.66 -82.66 -0.55 0.78 16 18 C 0.57 10.84 7.65 -12.39 -0.09 10.74 16 19 N -0.85 -11.81 8.86 30.50 0.27 -11.54 16 20 O -0.46 -10.24 15.20 5.30 0.08 -10.16 16 21 C 0.08 1.49 2.42 -66.02 -0.16 1.33 16 22 C -0.12 -1.87 5.67 -25.61 -0.15 -2.01 16 23 C -0.12 -1.46 6.80 -25.61 -0.17 -1.63 16 24 C -0.12 -1.56 6.83 -25.07 -0.17 -1.73 16 25 C -0.11 -1.83 5.36 -24.70 -0.13 -1.96 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.05 1.10 5.20 -51.93 -0.27 0.83 16 28 H 0.00 0.03 7.20 -51.93 -0.37 -0.34 16 29 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.40 4.81 8.18 -40.82 -0.33 4.47 16 31 H 0.40 4.74 8.93 -40.82 -0.36 4.37 16 32 H 0.05 0.92 8.04 -51.93 -0.42 0.51 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.25 7.15 -51.93 -0.37 0.88 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 40 H 0.06 1.07 7.60 -51.93 -0.39 0.67 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -33.33 343.91 -8.26 -41.59 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.05 Total: 6.17 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -2.77 Total: 6.07 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 0.50 Total: -64.04 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.68 Total: 16.99 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.51 Total: -1.78 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.33 -8.26 -41.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.033 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds