Wall clock time and date at job start Tue Mar 31 2020 13:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00158 * 2 1 4 4 H 1.48503 * 109.46866 * 270.00004 * 3 2 1 5 5 H 1.48500 * 109.47034 * 29.99863 * 3 2 1 6 6 H 1.48501 * 109.47201 * 149.99995 * 3 2 1 7 7 C 1.37884 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99170 * 359.97438 * 7 2 1 9 9 C 1.50692 * 120.00385 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.47358 * 175.56295 * 9 7 2 11 11 C 1.38326 * 110.99612 * 71.73364 * 10 9 7 12 12 N 1.32842 * 120.15223 * 60.73971 * 11 10 9 13 13 C 1.32006 * 119.99978 * 179.77041 * 12 11 10 14 14 C 1.38962 * 120.31012 * 0.51100 * 13 12 11 15 15 Cl 1.73605 * 119.84553 * 179.76789 * 14 13 12 16 16 N 1.31804 * 120.30549 * 359.74569 * 14 13 12 17 17 C 1.33062 * 119.99496 * 359.97438 * 16 14 13 18 18 C 1.47718 * 120.15579 * 180.02562 * 17 16 14 19 19 N 1.34777 * 119.99663 * 4.13285 * 18 17 16 20 20 O 1.21570 * 120.00463 * 184.13119 * 18 17 16 21 21 C 1.46891 * 111.00337 * 195.68643 * 10 9 7 22 22 C 1.54271 * 110.48550 * 176.99800 * 21 10 9 23 23 C 1.53883 * 106.63778 * 217.73587 * 22 21 10 24 24 C 1.54268 * 106.59808 * 359.97235 * 23 22 21 25 25 C 1.54888 * 104.19514 * 23.61361 * 24 23 22 26 26 H 0.97006 * 120.00236 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.47027 * 55.57144 * 9 7 2 28 28 H 1.08994 * 109.47266 * 295.57111 * 9 7 2 29 29 H 1.07998 * 119.84051 * 180.25981 * 13 12 11 30 30 H 0.96992 * 120.00214 * 0.02562 * 19 18 17 31 31 H 0.97006 * 119.99413 * 179.97438 * 19 18 17 32 32 H 1.09001 * 110.54398 * 299.60734 * 21 10 9 33 33 H 1.09003 * 110.03371 * 98.43027 * 22 21 10 34 34 H 1.08995 * 110.03329 * 337.04408 * 22 21 10 35 35 H 1.08994 * 110.03114 * 119.26092 * 23 22 21 36 36 H 1.09003 * 110.02824 * 240.64230 * 23 22 21 37 37 H 1.08999 * 110.48172 * 142.28418 * 24 23 22 38 38 H 1.08997 * 110.48983 * 264.93038 * 24 23 22 39 39 H 1.08999 * 110.75756 * 80.36515 * 25 24 23 40 40 H 1.08996 * 110.75675 * 203.55471 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5749 0.1055 11 6 3.7844 -3.2699 -1.0706 12 7 4.3425 -2.8561 -2.2028 13 6 4.1372 -3.5243 -3.3227 14 6 3.3298 -4.6552 -3.3265 15 17 3.0632 -5.5213 -4.8073 16 7 2.7659 -5.0737 -2.2111 17 6 2.9691 -4.4126 -1.0744 18 6 2.3393 -4.8788 0.1779 19 7 1.6252 -6.0218 0.1881 20 8 2.4650 -4.2315 1.1992 21 6 5.4216 -2.6024 0.4790 22 6 5.9040 -4.0564 0.6608 23 6 6.8805 -4.0512 1.8501 24 6 6.9585 -2.5938 2.3499 25 6 5.6298 -1.9569 1.8723 26 1 -0.4851 0.8401 -0.0004 27 1 3.8751 -0.6132 0.8466 28 1 3.8744 -0.7503 -0.9281 29 1 4.5957 -3.1880 -4.2408 30 1 1.5252 -6.5385 -0.6266 31 1 1.2120 -6.3281 1.0106 32 1 6.0245 -2.0916 -0.2719 33 1 6.4149 -4.3957 -0.2403 34 1 5.0564 -4.7068 0.8765 35 1 6.5063 -4.6984 2.6432 36 1 7.8650 -4.3889 1.5263 37 1 7.0252 -2.5666 3.4375 38 1 7.8099 -2.0818 1.9015 39 1 4.8126 -2.2184 2.5444 40 1 5.7283 -0.8746 1.7891 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:12 Heat of formation + Delta-G solvation = -0.772652 kcal Electronic energy + Delta-G solvation = -26491.101289 eV Core-core repulsion = 22752.290350 eV Total energy + Delta-G solvation = -3738.810939 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.67177 -39.92299 -39.84151 -37.92236 -36.88285 -35.43551 -34.56904 -34.23911 -31.88144 -30.21984 -29.49145 -27.69320 -26.88562 -25.15459 -23.19406 -22.43738 -21.18230 -21.04751 -19.38625 -19.23239 -18.92900 -18.02716 -17.40971 -17.27376 -16.72792 -16.63780 -16.16148 -16.01661 -15.37034 -15.19412 -15.02261 -14.70179 -14.40448 -14.25225 -13.91999 -13.46240 -13.23245 -13.04796 -12.73867 -12.54498 -12.42887 -12.22854 -12.13818 -12.07302 -11.87129 -11.81047 -11.72089 -11.48307 -11.33960 -11.30501 -10.82413 -10.63120 -10.54504 -10.07967 -9.29065 -8.29390 -6.31763 -0.81694 -0.33520 0.44471 1.30252 1.32415 1.42666 1.69422 2.22483 2.31420 2.56694 2.58440 2.96489 3.04265 3.22329 3.27861 3.59394 3.75376 3.91006 4.04034 4.21112 4.39805 4.45815 4.55494 4.59523 4.68716 4.72310 4.81062 4.90732 4.95515 5.07416 5.20064 5.24649 5.28737 5.47702 5.50580 5.68155 5.87154 5.95776 6.25359 6.29305 6.48254 6.54396 6.73554 7.29160 7.39720 8.87409 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.008985 B = 0.006439 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.569629 B = 4347.688291 C = 5694.407896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.245 1.245 7 C -0.507 4.507 8 H 0.035 0.965 9 C 0.180 3.820 10 N -0.462 5.462 11 C 0.333 3.667 12 N -0.477 5.477 13 C 0.119 3.881 14 C 0.100 3.900 15 Cl 0.014 6.986 16 N -0.404 5.404 17 C 0.047 3.953 18 C 0.568 3.432 19 N -0.826 5.826 20 O -0.507 6.507 21 C 0.078 3.922 22 C -0.114 4.114 23 C -0.110 4.110 24 C -0.111 4.111 25 C -0.115 4.115 26 H 0.266 0.734 27 H 0.045 0.955 28 H -0.003 1.003 29 H 0.219 0.781 30 H 0.415 0.585 31 H 0.414 0.586 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.823 -11.999 -5.103 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.169 1.169 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.055 3.945 10 N -0.186 5.186 11 C 0.103 3.897 12 N -0.195 5.195 13 C -0.046 4.046 14 C -0.071 4.071 15 Cl 0.043 6.957 16 N -0.125 5.125 17 C -0.096 4.096 18 C 0.349 3.651 19 N -0.393 5.393 20 O -0.378 6.378 21 C -0.029 4.029 22 C -0.152 4.152 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.153 4.153 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.015 0.985 29 H 0.236 0.764 30 H 0.246 0.754 31 H 0.246 0.754 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.561 -11.625 -4.165 18.341 hybrid contribution -0.568 0.759 -0.979 1.363 sum 12.993 -10.865 -5.144 17.701 Atomic orbital electron populations 1.70048 1.08055 1.27919 1.52677 1.25771 0.95585 1.02855 0.94483 0.85827 0.79788 0.78933 0.79161 1.19347 1.20482 1.16852 1.21156 0.90690 0.93265 1.49441 0.94716 1.20042 0.94545 0.84087 0.95864 1.60113 1.17995 1.16470 1.23977 1.20770 0.89237 0.90322 0.89331 1.68897 1.21941 1.29157 0.99461 1.24376 0.93040 0.88954 0.98250 1.22998 0.98593 0.95225 0.90278 1.98415 1.95423 1.75860 1.26030 1.67601 1.17825 1.29572 0.97459 1.21944 0.99414 0.95218 0.93000 1.17451 0.79515 0.81812 0.86335 1.43411 1.54534 1.24447 1.16866 1.90965 1.59204 1.54871 1.32808 1.22731 0.84993 0.97616 0.97529 1.22160 0.98919 0.94848 0.99266 1.22019 0.98947 0.97374 0.96450 1.22288 0.95962 0.95166 1.01473 1.22536 0.98774 0.99216 0.94779 0.92533 0.93701 0.98503 0.76413 0.75425 0.75351 0.93054 0.92343 0.93038 0.91540 0.89767 0.90069 0.90167 0.92153 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 2 C 0.01 0.62 5.47 84.66 0.46 1.08 16 3 Si 0.94 45.17 27.56 68.60 1.89 47.06 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.24 -10.88 6.42 99.48 0.64 -10.24 16 7 C -0.51 -30.52 9.42 25.60 0.24 -30.28 16 8 H 0.03 2.36 7.51 -2.91 -0.02 2.34 16 9 C 0.18 9.02 3.67 85.56 0.31 9.33 16 10 N -0.46 -20.28 2.24 -675.21 -1.51 -21.80 16 11 C 0.33 13.68 3.79 133.46 0.51 14.19 16 12 N -0.48 -17.43 9.60 -191.74 -1.84 -19.27 16 13 C 0.12 3.35 11.01 84.84 0.93 4.29 16 14 C 0.10 2.83 7.28 84.87 0.62 3.44 16 15 Cl 0.01 0.30 29.12 -2.72 -0.08 0.22 16 16 N -0.40 -13.24 9.69 -174.93 -1.70 -14.94 16 17 C 0.05 1.82 6.66 41.98 0.28 2.10 16 18 C 0.57 22.41 7.65 86.75 0.66 23.07 16 19 N -0.83 -23.41 8.86 -175.69 -1.56 -24.97 16 20 O -0.51 -24.06 15.20 -3.94 -0.06 -24.12 16 21 C 0.08 2.77 2.42 46.02 0.11 2.88 16 22 C -0.11 -3.43 5.67 31.32 0.18 -3.25 16 23 C -0.11 -2.56 6.80 31.32 0.21 -2.35 16 24 C -0.11 -2.60 6.83 31.67 0.22 -2.38 16 25 C -0.12 -3.76 5.36 31.91 0.17 -3.59 16 26 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 27 H 0.05 2.23 5.20 -2.38 -0.01 2.21 16 28 H 0.00 -0.14 7.20 -2.39 -0.02 -0.16 16 29 H 0.22 4.01 8.06 -2.91 -0.02 3.98 16 30 H 0.41 9.78 8.18 -92.71 -0.76 9.02 16 31 H 0.41 9.93 8.93 -92.70 -0.83 9.10 16 32 H 0.05 1.81 8.04 -2.39 -0.02 1.79 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.79 7.15 -2.39 -0.02 1.77 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 2.02 7.60 -2.39 -0.02 2.00 16 Total: -1.00 -76.65 343.91 -0.20 -76.84 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -0.55 Total: 22.99 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 4.91 Total: 18.54 kcal Atomic # 7 Polarization: -135.24 SS G_CDS: -6.31 Total: -141.55 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.06 Total: -24.12 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.89 Total: 47.06 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -0.08 Total: 0.22 kcal Total: -76.65 -0.20 -76.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.071 kcal (2) G-P(sol) polarization free energy of solvation -76.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds