Wall clock time and date at job start Tue Mar 31 2020 13:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00154 * 2 1 4 4 H 1.48501 * 109.47129 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 300.00121 * 3 2 1 6 6 H 1.48505 * 109.47004 * 59.99716 * 3 2 1 7 7 C 1.37880 * 119.99462 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.98966 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00319 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47037 * 179.97438 * 9 7 2 11 11 C 1.38440 * 120.00175 * 89.99715 * 10 9 7 12 12 N 1.32581 * 119.12829 * 180.02562 * 11 10 9 13 13 C 1.32223 * 120.93215 * 179.97438 * 12 11 10 14 14 Cl 1.73601 * 120.39374 * 180.02562 * 13 12 11 15 15 C 1.39026 * 119.21229 * 0.02562 * 13 12 11 16 16 C 1.39385 * 118.40870 * 359.97438 * 15 13 12 17 17 C 1.48463 * 120.49377 * 180.02562 * 16 15 13 18 18 N 1.34776 * 119.99523 * 180.02562 * 17 16 15 19 19 O 1.21476 * 120.00210 * 0.02562 * 17 16 15 20 20 N 1.32255 * 119.12657 * 359.97438 * 11 10 9 21 21 C 1.46497 * 120.00257 * 270.00135 * 10 9 7 22 22 C 1.54263 * 110.03336 * 237.16823 * 21 10 9 23 23 C 1.54890 * 104.19816 * 217.10143 * 22 21 10 24 24 C 1.54888 * 102.74552 * 37.94214 * 23 22 21 25 25 C 1.53874 * 110.03586 * 119.99882 * 21 10 9 26 26 H 0.97006 * 119.99959 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46932 * 59.99467 * 9 7 2 28 28 H 1.09003 * 109.46546 * 299.99539 * 9 7 2 29 29 H 1.08003 * 120.80052 * 180.27008 * 15 13 12 30 30 H 0.96995 * 120.00629 * 359.97438 * 18 17 16 31 31 H 0.97007 * 119.99645 * 180.02562 * 18 17 16 32 32 H 1.09003 * 110.01860 * 358.60806 * 21 10 9 33 33 H 1.09002 * 110.48596 * 335.77851 * 22 21 10 34 34 H 1.09000 * 110.49132 * 98.42067 * 22 21 10 35 35 H 1.08992 * 110.75757 * 279.62357 * 23 22 21 36 36 H 1.08998 * 110.91643 * 156.32490 * 23 22 21 37 37 H 1.09000 * 110.48652 * 203.38162 * 24 23 22 38 38 H 1.09005 * 110.60322 * 80.79393 * 24 23 22 39 39 H 1.08998 * 110.03209 * 238.56637 * 25 21 10 40 40 H 1.08997 * 110.03330 * 359.95264 * 25 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6527 -4.1388 1.1994 12 7 3.5145 -5.1461 1.1792 13 6 3.9678 -5.6754 2.3029 14 17 5.0966 -6.9937 2.2601 15 6 3.5297 -5.1637 3.5191 16 6 2.6236 -4.1046 3.5051 17 6 2.1258 -3.5223 4.7768 18 7 1.2494 -2.4987 4.7516 19 8 2.5084 -3.9683 5.8400 20 7 2.2122 -3.6226 2.3346 21 6 2.6789 -4.1695 -1.2681 22 6 2.3672 -5.6789 -1.3329 23 6 3.5944 -6.2897 -2.0538 24 6 4.7729 -5.4628 -1.4824 25 6 4.2085 -4.0321 -1.3632 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5570 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 3.8866 -5.5737 4.4523 30 1 0.9442 -2.1423 3.9027 31 1 0.9244 -2.1179 5.5825 32 1 2.2051 -3.6535 -2.1033 33 1 2.2701 -6.0918 -0.3288 34 1 1.4590 -5.8566 -1.9088 35 1 3.5153 -6.1551 -3.1325 36 1 3.7065 -7.3449 -1.8050 37 1 5.6205 -5.4827 -2.1675 38 1 5.0666 -5.8399 -0.5027 39 1 4.4770 -3.4502 -2.2449 40 1 4.5967 -3.5504 -0.4658 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166535750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:08 Heat of formation + Delta-G solvation = 14.898857 kcal Electronic energy + Delta-G solvation = -26056.128219 eV Core-core repulsion = 22317.996847 eV Total energy + Delta-G solvation = -3738.131372 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.97252 -39.13655 -38.00206 -36.75734 -34.92712 -33.87475 -32.85355 -32.65519 -30.70022 -28.33172 -28.13881 -26.28966 -25.32215 -23.83058 -21.80442 -21.19812 -20.36454 -19.53430 -17.91848 -17.71751 -16.69940 -16.43213 -15.82873 -15.53511 -15.30599 -15.13408 -14.77624 -14.56876 -14.30365 -13.77688 -13.73388 -13.46191 -12.87542 -12.86415 -12.15536 -11.81198 -11.56416 -11.39499 -11.26243 -10.90517 -10.85843 -10.75664 -10.72310 -10.64860 -10.44684 -10.32643 -10.19103 -10.12493 -10.00296 -9.91982 -9.55129 -9.36789 -8.88003 -8.56727 -7.29120 -6.17941 -4.24043 0.81215 1.31038 1.69074 2.96695 3.19346 3.23779 3.28403 3.34160 3.50537 4.16323 4.31249 4.50058 4.78615 4.98942 5.02175 5.02909 5.15350 5.26870 5.45746 5.58362 5.75723 5.82906 5.91082 5.95408 6.02419 6.11874 6.23033 6.31019 6.38659 6.60319 6.64624 6.75682 6.80526 6.87094 7.01694 7.24139 7.41994 7.60217 7.76023 8.04662 8.05256 8.30076 8.56132 8.82976 9.41355 10.87959 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.009500 B = 0.006233 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.732268 B = 4491.448022 C = 6670.817410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.254 3.746 10 N -0.546 5.546 11 C 0.590 3.410 12 N -0.546 5.546 13 C 0.262 3.738 14 Cl -0.026 7.026 15 C -0.245 4.245 16 C 0.183 3.817 17 C 0.584 3.416 18 N -0.826 5.826 19 O -0.538 6.538 20 N -0.520 5.520 21 C 0.160 3.840 22 C -0.130 4.130 23 C -0.113 4.113 24 C -0.114 4.114 25 C -0.120 4.120 26 H 0.263 0.737 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.155 0.845 30 H 0.422 0.578 31 H 0.404 0.596 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.912 -10.503 1.343 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.076 0.924 9 C 0.135 3.865 10 N -0.256 5.256 11 C 0.235 3.765 12 N -0.273 5.273 13 C 0.084 3.916 14 Cl 0.003 6.997 15 C -0.275 4.275 16 C 0.030 3.970 17 C 0.366 3.634 18 N -0.389 5.389 19 O -0.414 6.414 20 N -0.245 5.245 21 C 0.055 3.945 22 C -0.168 4.168 23 C -0.151 4.151 24 C -0.152 4.152 25 C -0.159 4.159 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.173 0.827 30 H 0.254 0.746 31 H 0.235 0.765 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.712 -10.331 0.790 11.382 hybrid contribution 0.598 0.993 0.570 1.292 sum 5.309 -9.338 1.361 10.828 Atomic orbital electron populations 1.69931 1.05857 1.27016 1.50359 1.24875 0.94819 0.98999 0.95036 0.86500 0.80078 0.83503 0.77700 1.19903 1.20941 1.20871 1.21434 0.93383 0.90294 1.51122 0.92418 1.19496 0.86697 0.81418 0.98921 1.47303 1.44659 1.34030 0.99608 1.18973 0.85795 0.84874 0.86865 1.67402 1.15937 1.14059 1.29884 1.21520 0.90792 0.89908 0.89346 1.98402 1.58253 1.44493 1.98594 1.21968 1.04704 1.01891 0.98908 1.21107 0.92308 0.91555 0.92017 1.17737 0.78808 0.79927 0.86913 1.43698 1.45987 1.35383 1.13877 1.90798 1.58581 1.61781 1.30278 1.67993 1.28960 1.30679 0.96893 1.21664 0.94498 0.93297 0.85003 1.22753 0.97422 0.95182 1.01486 1.22314 0.95200 0.98848 0.98777 1.22284 0.96636 0.95071 1.01193 1.22383 0.94883 0.97021 1.01605 0.92684 0.94569 0.93139 0.82723 0.74613 0.76489 0.88789 0.90333 0.92370 0.92258 0.92156 0.93141 0.90378 0.92157 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.90 13.29 55.43 0.74 -23.17 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.26 9.39 -34.44 -0.32 -13.58 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.25 5.83 5.14 -5.20 -0.03 5.80 16 10 N -0.55 -10.76 2.48 -168.57 -0.42 -11.18 16 11 C 0.59 11.30 7.06 -322.95 -2.28 9.02 16 12 N -0.55 -9.28 4.94 -11.03 -0.05 -9.33 16 13 C 0.26 4.07 7.34 -17.09 -0.13 3.95 16 14 Cl -0.03 -0.33 29.15 -51.86 -1.51 -1.84 16 15 C -0.24 -3.84 9.52 -38.86 -0.37 -4.21 16 16 C 0.18 3.15 6.79 -82.67 -0.56 2.59 16 17 C 0.58 9.53 8.10 -12.05 -0.10 9.44 16 18 N -0.83 -11.43 8.87 30.67 0.27 -11.16 16 19 O -0.54 -9.64 17.25 5.39 0.09 -9.55 16 20 N -0.52 -9.94 8.37 -10.51 -0.09 -10.03 16 21 C 0.16 2.70 3.36 -66.82 -0.22 2.48 16 22 C -0.13 -1.91 6.03 -25.07 -0.15 -2.06 16 23 C -0.11 -1.43 6.91 -24.74 -0.17 -1.60 16 24 C -0.11 -1.56 6.33 -25.07 -0.16 -1.72 16 25 C -0.12 -1.92 5.77 -25.61 -0.15 -2.07 16 26 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.04 0.87 7.92 -51.93 -0.41 0.46 16 28 H 0.05 1.24 7.33 -51.93 -0.38 0.86 16 29 H 0.16 2.19 7.73 -52.48 -0.41 1.79 16 30 H 0.42 6.27 8.21 -40.82 -0.34 5.93 16 31 H 0.40 4.50 8.93 -40.82 -0.36 4.14 16 32 H 0.09 1.60 7.82 -51.93 -0.41 1.20 16 33 H 0.08 1.28 5.93 -51.93 -0.31 0.97 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.14 6.96 -51.93 -0.36 0.78 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.21 7.13 -51.93 -0.37 0.84 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -27.44 347.20 -10.50 -37.94 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.00 Total: 8.12 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -4.73 Total: 9.61 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: 0.45 Total: -64.86 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.51 Total: -1.84 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.44 -10.50 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.836 kcal (2) G-P(sol) polarization free energy of solvation -27.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds