Wall clock time and date at job start Tue Mar 31 2020 13:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00154 * 2 1 4 4 H 1.48501 * 109.47129 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 300.00121 * 3 2 1 6 6 H 1.48505 * 109.47004 * 59.99716 * 3 2 1 7 7 C 1.37880 * 119.99462 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.98966 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00319 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47037 * 179.97438 * 9 7 2 11 11 C 1.38440 * 120.00175 * 89.99715 * 10 9 7 12 12 N 1.32581 * 119.12829 * 180.02562 * 11 10 9 13 13 C 1.32223 * 120.93215 * 179.97438 * 12 11 10 14 14 Cl 1.73601 * 120.39374 * 180.02562 * 13 12 11 15 15 C 1.39026 * 119.21229 * 0.02562 * 13 12 11 16 16 C 1.39385 * 118.40870 * 359.97438 * 15 13 12 17 17 C 1.48463 * 120.49377 * 180.02562 * 16 15 13 18 18 N 1.34776 * 119.99523 * 180.02562 * 17 16 15 19 19 O 1.21476 * 120.00210 * 0.02562 * 17 16 15 20 20 N 1.32255 * 119.12657 * 359.97438 * 11 10 9 21 21 C 1.46497 * 120.00257 * 270.00135 * 10 9 7 22 22 C 1.54263 * 110.03336 * 237.16823 * 21 10 9 23 23 C 1.54890 * 104.19816 * 217.10143 * 22 21 10 24 24 C 1.54888 * 102.74552 * 37.94214 * 23 22 21 25 25 C 1.53874 * 110.03586 * 119.99882 * 21 10 9 26 26 H 0.97006 * 119.99959 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46932 * 59.99467 * 9 7 2 28 28 H 1.09003 * 109.46546 * 299.99539 * 9 7 2 29 29 H 1.08003 * 120.80052 * 180.27008 * 15 13 12 30 30 H 0.96995 * 120.00629 * 359.97438 * 18 17 16 31 31 H 0.97007 * 119.99645 * 180.02562 * 18 17 16 32 32 H 1.09003 * 110.01860 * 358.60806 * 21 10 9 33 33 H 1.09002 * 110.48596 * 335.77851 * 22 21 10 34 34 H 1.09000 * 110.49132 * 98.42067 * 22 21 10 35 35 H 1.08992 * 110.75757 * 279.62357 * 23 22 21 36 36 H 1.08998 * 110.91643 * 156.32490 * 23 22 21 37 37 H 1.09000 * 110.48652 * 203.38162 * 24 23 22 38 38 H 1.09005 * 110.60322 * 80.79393 * 24 23 22 39 39 H 1.08998 * 110.03209 * 238.56637 * 25 21 10 40 40 H 1.08997 * 110.03330 * 359.95264 * 25 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6527 -4.1388 1.1994 12 7 3.5145 -5.1461 1.1792 13 6 3.9678 -5.6754 2.3029 14 17 5.0966 -6.9937 2.2601 15 6 3.5297 -5.1637 3.5191 16 6 2.6236 -4.1046 3.5051 17 6 2.1258 -3.5223 4.7768 18 7 1.2494 -2.4987 4.7516 19 8 2.5084 -3.9683 5.8400 20 7 2.2122 -3.6226 2.3346 21 6 2.6789 -4.1695 -1.2681 22 6 2.3672 -5.6789 -1.3329 23 6 3.5944 -6.2897 -2.0538 24 6 4.7729 -5.4628 -1.4824 25 6 4.2085 -4.0321 -1.3632 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5570 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 3.8866 -5.5737 4.4523 30 1 0.9442 -2.1423 3.9027 31 1 0.9244 -2.1179 5.5825 32 1 2.2051 -3.6535 -2.1033 33 1 2.2701 -6.0918 -0.3288 34 1 1.4590 -5.8566 -1.9088 35 1 3.5153 -6.1551 -3.1325 36 1 3.7065 -7.3449 -1.8050 37 1 5.6205 -5.4827 -2.1675 38 1 5.0666 -5.8399 -0.5027 39 1 4.4770 -3.4502 -2.2449 40 1 4.5967 -3.5504 -0.4658 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166535750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:08 Heat of formation + Delta-G solvation = 0.611099 kcal Electronic energy + Delta-G solvation = -26056.747782 eV Core-core repulsion = 22317.996847 eV Total energy + Delta-G solvation = -3738.750935 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.33107 -40.45627 -39.29045 -37.93319 -36.40235 -35.17241 -34.55828 -34.10059 -32.10956 -29.73862 -29.49852 -27.79332 -26.64397 -25.47101 -23.38653 -22.50785 -21.46983 -20.83481 -19.27980 -19.02810 -18.54756 -17.81225 -17.21019 -16.84667 -16.66594 -16.57307 -16.25395 -15.92495 -15.65020 -15.25200 -14.99044 -14.75909 -14.56098 -14.06209 -13.61148 -13.46588 -13.08518 -12.86375 -12.65493 -12.55141 -12.39368 -12.05593 -12.01582 -11.88272 -11.80642 -11.71976 -11.68193 -11.53779 -11.41772 -11.18419 -10.89143 -10.77141 -10.58715 -10.21542 -8.81517 -8.13182 -6.28418 -0.52379 -0.02118 0.45978 1.37595 1.41571 1.50467 1.63930 1.84952 2.22503 2.40944 2.80305 3.13364 3.16687 3.42895 3.74284 3.80349 3.85578 4.04969 4.22464 4.25417 4.56714 4.61355 4.68191 4.75503 4.86619 4.95495 5.03987 5.09768 5.18740 5.27863 5.28752 5.39523 5.41922 5.57362 5.68134 5.69988 5.78776 6.01232 6.11586 6.24087 6.52247 6.78086 7.06545 7.20120 7.41309 8.88908 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.009500 B = 0.006233 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.732268 B = 4491.448022 C = 6670.817410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.025 3.975 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.527 4.527 8 H 0.042 0.958 9 C 0.273 3.727 10 N -0.557 5.557 11 C 0.577 3.423 12 N -0.538 5.538 13 C 0.257 3.743 14 Cl 0.008 6.992 15 C -0.234 4.234 16 C 0.169 3.831 17 C 0.585 3.415 18 N -0.811 5.811 19 O -0.556 6.556 20 N -0.544 5.544 21 C 0.152 3.848 22 C -0.123 4.123 23 C -0.103 4.103 24 C -0.107 4.107 25 C -0.116 4.116 26 H 0.266 0.734 27 H 0.020 0.980 28 H 0.031 0.969 29 H 0.173 0.827 30 H 0.419 0.581 31 H 0.418 0.582 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 -11.537 1.127 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.175 4.175 3 Si 0.777 3.223 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.061 0.939 9 C 0.153 3.847 10 N -0.268 5.268 11 C 0.221 3.779 12 N -0.264 5.264 13 C 0.079 3.921 14 Cl 0.036 6.964 15 C -0.263 4.263 16 C 0.018 3.982 17 C 0.367 3.633 18 N -0.375 5.375 19 O -0.434 6.434 20 N -0.270 5.270 21 C 0.049 3.951 22 C -0.162 4.162 23 C -0.141 4.141 24 C -0.145 4.145 25 C -0.155 4.155 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.190 0.810 30 H 0.250 0.750 31 H 0.251 0.749 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.962 -11.380 0.604 12.861 hybrid contribution 0.265 1.235 0.691 1.440 sum 6.226 -10.145 1.294 11.974 Atomic orbital electron populations 1.70011 1.06885 1.27789 1.51124 1.25500 0.95489 1.01666 0.94832 0.85633 0.78575 0.80244 0.77879 1.20347 1.20384 1.20346 1.21547 0.92666 0.91611 1.50745 0.93924 1.18970 0.86775 0.81927 0.97061 1.47101 1.44940 1.33894 1.00863 1.19057 0.86528 0.85653 0.86628 1.67468 1.15223 1.13314 1.30380 1.21819 0.90913 0.90405 0.88936 1.98413 1.56809 1.42619 1.98519 1.22197 1.03501 1.00894 0.99728 1.21340 0.92873 0.92208 0.91792 1.17680 0.79040 0.80240 0.86382 1.43598 1.44960 1.34465 1.14437 1.90786 1.59478 1.62532 1.30560 1.67939 1.29915 1.31658 0.97513 1.21872 0.95004 0.94626 0.83642 1.22679 0.98983 0.93404 1.01098 1.22294 0.93168 0.99200 0.99446 1.22233 0.97604 0.93303 1.01359 1.22329 0.94213 0.98612 1.00311 0.92472 0.96177 0.95053 0.80995 0.74981 0.74884 0.89596 0.91841 0.91565 0.90535 0.90684 0.91205 0.91261 0.91646 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.79 13.29 21.45 0.28 -49.50 16 2 C 0.03 1.31 5.46 84.65 0.46 1.77 16 3 Si 0.95 42.00 29.54 68.60 2.03 44.03 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.53 -27.32 9.39 25.60 0.24 -27.08 16 8 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 9 C 0.27 13.02 5.14 85.63 0.44 13.46 16 10 N -0.56 -22.50 2.48 -687.22 -1.71 -24.21 16 11 C 0.58 22.38 7.06 261.54 1.85 24.22 16 12 N -0.54 -18.00 4.94 -188.81 -0.93 -18.93 16 13 C 0.26 7.66 7.34 84.82 0.62 8.29 16 14 Cl 0.01 0.18 29.15 -2.72 -0.08 0.10 16 15 C -0.23 -7.09 9.52 22.74 0.22 -6.87 16 16 C 0.17 5.79 6.79 41.96 0.28 6.08 16 17 C 0.58 18.88 8.10 86.97 0.70 19.59 16 18 N -0.81 -22.31 8.87 -175.18 -1.55 -23.86 16 19 O -0.56 -19.46 17.25 -3.64 -0.06 -19.52 16 20 N -0.54 -21.19 8.37 -187.16 -1.57 -22.75 16 21 C 0.15 5.16 3.36 45.72 0.15 5.32 16 22 C -0.12 -3.48 6.03 31.67 0.19 -3.29 16 23 C -0.10 -2.33 6.91 31.88 0.22 -2.11 16 24 C -0.11 -2.71 6.33 31.67 0.20 -2.51 16 25 C -0.12 -3.66 5.77 31.32 0.18 -3.48 16 26 H 0.27 13.67 8.31 -92.70 -0.77 12.90 16 27 H 0.02 1.01 7.92 -2.39 -0.02 1.00 16 28 H 0.03 1.60 7.33 -2.39 -0.02 1.59 16 29 H 0.17 4.57 7.73 -2.91 -0.02 4.54 16 30 H 0.42 12.61 8.21 -92.71 -0.76 11.85 16 31 H 0.42 9.04 8.93 -92.70 -0.83 8.22 16 32 H 0.09 2.98 7.82 -2.39 -0.02 2.97 16 33 H 0.06 2.01 5.93 -2.39 -0.01 1.99 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.87 6.96 -2.38 -0.02 1.86 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.04 1.33 7.13 -2.39 -0.02 1.32 16 Total: -1.00 -58.62 347.20 1.69 -56.93 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.48 Total: 24.33 kcal Atomic # 6 Polarization: 27.62 SS G_CDS: 5.76 Total: 33.39 kcal Atomic # 7 Polarization: -133.78 SS G_CDS: -5.48 Total: -139.26 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.06 Total: -19.52 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -0.08 Total: 0.10 kcal Total: -58.62 1.69 -56.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.539 kcal (2) G-P(sol) polarization free energy of solvation -58.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds