Wall clock time and date at job start Tue Mar 31 2020 14:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32991 * 1 3 3 C 1.50702 * 120.00115 * 2 1 4 4 C 1.47102 * 120.00040 * 180.02562 * 2 1 3 5 5 O 1.21611 * 120.00359 * 359.97438 * 4 2 1 6 6 N 1.34782 * 120.00113 * 180.02562 * 4 2 1 7 7 C 1.46491 * 120.00198 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47226 * 179.97438 * 7 6 4 9 9 C 1.53007 * 109.47131 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.46715 * 179.97438 * 9 8 7 11 11 C 1.38540 * 119.99922 * 179.97438 * 10 9 8 12 12 C 1.40049 * 120.44672 * 0.02562 * 11 10 9 13 13 C 1.38799 * 118.59414 * 180.02562 * 12 11 10 14 14 Cl 1.73599 * 120.34072 * 179.97438 * 13 12 11 15 15 N 1.32212 * 119.32286 * 359.97438 * 13 12 11 16 16 C 1.33418 * 120.85893 * 0.02562 * 15 13 12 17 17 C 1.41573 * 119.23144 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99748 * 173.64653 * 17 16 15 19 19 C 1.40049 * 120.00572 * 353.64374 * 17 16 15 20 20 N 1.30692 * 119.99799 * 6.31996 * 19 17 16 21 21 Si 1.86800 * 120.00509 * 186.31872 * 19 17 16 22 22 H 1.48499 * 109.47028 * 94.98296 * 21 19 17 23 23 H 1.48498 * 109.47164 * 214.98656 * 21 19 17 24 24 H 1.48497 * 109.47054 * 334.98541 * 21 19 17 25 25 N 1.32566 * 120.45445 * 179.72611 * 11 10 9 26 26 H 1.07996 * 120.00218 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.99892 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47304 * 270.00388 * 3 2 1 29 29 H 1.09008 * 109.46697 * 30.00017 * 3 2 1 30 30 H 1.09003 * 109.47041 * 149.99532 * 3 2 1 31 31 H 0.97005 * 119.99256 * 359.97438 * 6 4 2 32 32 H 1.09005 * 109.47210 * 60.00021 * 7 6 4 33 33 H 1.09004 * 109.47624 * 300.00124 * 7 6 4 34 34 H 1.08995 * 109.47014 * 59.99898 * 8 7 6 35 35 H 1.09007 * 109.47143 * 299.99827 * 8 7 6 36 36 H 1.08995 * 109.46996 * 59.99654 * 9 8 7 37 37 H 1.08998 * 109.46681 * 299.99638 * 9 8 7 38 38 H 0.97003 * 120.00624 * 0.02562 * 10 9 8 39 39 H 1.07995 * 120.70313 * 359.97427 * 12 11 10 40 40 H 0.97001 * 120.00483 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0835 1.3051 0.0000 4 6 2.0654 -1.2739 -0.0006 5 8 1.4575 -2.3272 -0.0006 6 7 3.4133 -1.2740 0.0000 7 6 4.1457 -2.5426 0.0000 8 6 5.6500 -2.2630 0.0000 9 6 6.4150 -3.5881 -0.0007 10 7 7.8553 -3.3203 -0.0013 11 6 8.7557 -4.3732 -0.0014 12 6 8.2992 -5.6973 -0.0015 13 6 9.2349 -6.7225 -0.0011 14 17 8.7194 -8.3802 -0.0005 15 7 10.5228 -6.4237 -0.0011 16 6 10.9306 -5.1533 -0.0011 17 6 12.3182 -4.8727 -0.0006 18 1 12.6632 -3.8544 -0.1040 19 6 13.2436 -5.9152 0.1341 20 7 12.8341 -7.1563 0.1352 21 14 15.0631 -5.5320 0.3122 22 1 15.4236 -5.5000 1.7525 23 1 15.8594 -6.5808 -0.3742 24 1 15.3529 -4.2105 -0.3000 25 7 10.0608 -4.1413 -0.0074 26 1 -0.5400 0.9352 0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 2.2651 1.6198 -1.0276 29 1 1.4943 2.0648 0.5139 30 1 3.0358 1.1747 0.5139 31 1 3.8982 -0.4338 0.0003 32 1 3.8828 -3.1140 -0.8903 33 1 3.8821 -3.1145 0.8897 34 1 5.9133 -1.6914 0.8899 35 1 5.9133 -1.6914 -0.8901 36 1 6.1516 -4.1592 -0.8908 37 1 6.1518 -4.1599 0.8891 38 1 8.1787 -2.4057 -0.0009 39 1 7.2416 -5.9159 -0.0010 40 1 13.4749 -7.8785 0.2281 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167666415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:45 Heat of formation + Delta-G solvation = -8.076072 kcal Electronic energy + Delta-G solvation = -23256.602283 eV Core-core repulsion = 19517.474644 eV Total energy + Delta-G solvation = -3739.127639 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96402 -40.83701 -38.02249 -37.36993 -36.30044 -35.52491 -35.25898 -33.47255 -32.42278 -30.65124 -28.33365 -28.05768 -26.76601 -24.21404 -23.86886 -22.96839 -22.58602 -20.21238 -19.74687 -18.32038 -17.88104 -17.60815 -17.18510 -16.99127 -16.56009 -15.95667 -15.83733 -15.61891 -15.29026 -15.13907 -14.95569 -14.53678 -14.24600 -14.23372 -13.77799 -13.38875 -13.26522 -13.13849 -12.92771 -12.89104 -12.71372 -12.60463 -12.44089 -12.22460 -12.02402 -11.92338 -11.53211 -11.03603 -10.92934 -10.90068 -10.39308 -10.11899 -10.06747 -9.42421 -8.81889 -8.44188 -6.78749 0.42731 0.63550 1.13481 1.13804 1.43133 1.54455 1.59698 2.04359 2.21882 2.25155 2.50961 2.75121 3.72138 3.85457 3.95128 3.98444 3.99487 4.04588 4.25326 4.51233 4.54117 4.54362 4.55527 4.65005 4.73717 4.83957 4.85319 4.97849 5.05652 5.10198 5.12399 5.15549 5.33722 5.35701 5.40993 5.56315 6.01592 6.17551 6.49948 6.52045 6.67508 6.76650 7.17831 7.23666 8.19672 8.37074 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.020794 B = 0.002089 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.224204 B =13399.492374 C =14709.814527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.197 4.197 3 C -0.115 4.115 4 C 0.539 3.461 5 O -0.593 6.593 6 N -0.712 5.712 7 C 0.124 3.876 8 C -0.122 4.122 9 C 0.135 3.865 10 N -0.713 5.713 11 C 0.448 3.552 12 C -0.400 4.400 13 C 0.245 3.755 14 Cl -0.059 7.059 15 N -0.564 5.564 16 C 0.407 3.593 17 C -0.427 4.427 18 H 0.097 0.903 19 C 0.023 3.977 20 N -0.740 5.740 21 Si 1.001 2.999 22 H -0.262 1.262 23 H -0.265 1.265 24 H -0.252 1.252 25 N -0.662 5.662 26 H 0.148 0.852 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.417 0.583 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.406 0.594 39 H 0.137 0.863 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.223 15.343 0.142 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.200 4.200 3 C -0.172 4.172 4 C 0.329 3.671 5 O -0.476 6.476 6 N -0.364 5.364 7 C 0.000 4.000 8 C -0.160 4.160 9 C 0.010 3.990 10 N -0.349 5.349 11 C 0.200 3.800 12 C -0.433 4.433 13 C 0.066 3.934 14 Cl -0.031 7.031 15 N -0.287 5.287 16 C 0.170 3.830 17 C -0.462 4.462 18 H 0.115 0.885 19 C -0.201 4.201 20 N -0.362 5.362 21 Si 0.820 3.180 22 H -0.187 1.187 23 H -0.189 1.189 24 H -0.176 1.176 25 N -0.394 5.394 26 H 0.165 0.835 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.255 0.745 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.242 0.758 39 H 0.155 0.845 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.759 14.322 0.135 21.295 hybrid contribution -0.046 -0.279 0.068 0.291 sum -15.805 14.043 0.203 21.144 Atomic orbital electron populations 1.24843 0.94569 1.04023 0.90078 1.21797 0.96218 0.94121 1.07855 1.20889 1.00327 0.92278 1.03683 1.19103 0.82634 0.90025 0.75323 1.90781 1.69338 1.35019 1.52422 1.45833 1.05936 1.10375 1.74300 1.21138 0.90533 0.85995 1.02339 1.21756 0.92317 0.96880 1.05063 1.21227 0.78020 0.97967 1.01776 1.44089 1.03772 1.05717 1.81365 1.18481 0.87939 0.87167 0.86446 1.21203 0.99880 0.91152 1.31044 1.21917 0.91762 0.86090 0.93619 1.98285 1.89110 1.19166 1.96553 1.68587 1.13593 1.21993 1.24516 1.19895 0.94182 0.81157 0.87776 1.19697 0.87769 0.96078 1.42700 0.88528 1.27108 1.06595 0.93846 0.92545 1.70231 1.38118 1.00722 1.27085 0.84918 0.73950 0.79688 0.79461 1.18686 1.18898 1.17564 1.68262 1.01226 1.36729 1.33174 0.83451 0.88624 0.89884 0.89398 0.90816 0.74488 0.91819 0.91809 0.89012 0.89014 0.92080 0.92085 0.75771 0.84481 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 13.91 66.65 0.93 -0.20 16 2 C -0.20 -2.61 6.00 -18.70 -0.11 -2.72 16 3 C -0.12 -0.66 9.61 71.24 0.68 0.02 16 4 C 0.54 10.99 7.75 86.57 0.67 11.66 16 5 O -0.59 -17.68 16.22 -4.07 -0.07 -17.75 16 6 N -0.71 -10.68 5.50 -466.71 -2.57 -13.25 16 7 C 0.12 2.12 5.67 86.38 0.49 2.61 16 8 C -0.12 -1.80 5.44 30.60 0.17 -1.63 16 9 C 0.13 3.12 4.92 86.38 0.43 3.54 16 10 N -0.71 -22.52 5.71 -344.55 -1.97 -24.49 16 11 C 0.45 19.86 7.71 133.39 1.03 20.89 16 12 C -0.40 -17.88 9.23 22.84 0.21 -17.67 16 13 C 0.24 12.32 7.33 84.77 0.62 12.95 16 14 Cl -0.06 -2.53 29.15 -2.72 -0.08 -2.61 16 15 N -0.56 -32.24 7.89 -185.04 -1.46 -33.70 16 16 C 0.41 23.33 7.36 135.16 0.99 24.32 16 17 C -0.43 -23.46 9.37 23.53 0.22 -23.24 16 18 H 0.10 5.05 7.86 -2.91 -0.02 5.03 16 19 C 0.02 1.18 5.49 85.30 0.47 1.65 16 20 N -0.74 -39.61 11.45 21.84 0.25 -39.36 16 21 Si 1.00 37.35 29.56 68.60 2.03 39.38 16 22 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 23 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 24 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 25 N -0.66 -34.50 10.39 -191.54 -1.99 -36.49 16 26 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16 27 H 0.10 1.50 7.49 -2.91 -0.02 1.48 16 28 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.09 0.27 8.07 -2.38 -0.02 0.25 16 30 H 0.07 0.30 6.70 -2.39 -0.02 0.28 16 31 H 0.42 3.59 6.57 -92.70 -0.61 2.98 16 32 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.06 1.47 7.97 -2.39 -0.02 1.45 16 37 H 0.06 1.46 7.97 -2.39 -0.02 1.45 16 38 H 0.41 11.50 8.60 -92.71 -0.80 10.70 16 39 H 0.14 5.25 6.85 -2.91 -0.02 5.23 16 40 H 0.28 13.65 8.29 -92.71 -0.77 12.88 16 Total: -1.00 -75.02 362.12 0.63 -74.39 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.31 Total: 21.70 kcal Atomic # 6 Polarization: 25.38 SS G_CDS: 6.80 Total: 32.18 kcal Atomic # 7 Polarization: -139.55 SS G_CDS: -7.73 Total: -147.29 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.07 Total: -17.75 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Atomic # 17 Polarization: -2.53 SS G_CDS: -0.08 Total: -2.61 kcal Total: -75.02 0.63 -74.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167666415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.317 kcal (2) G-P(sol) polarization free energy of solvation -75.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds