Wall clock time and date at job start Tue Mar 31 2020 13:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37658 * 119.93011 * 2 1 4 4 C 1.39796 * 119.94815 * 179.97438 * 3 2 1 5 5 C 1.43202 * 120.09833 * 179.97438 * 4 3 2 6 6 N 4.79953 * 134.63150 * 359.97438 * 2 1 3 7 7 C 1.40060 * 119.80427 * 0.02562 * 4 3 2 8 8 F 1.35092 * 120.07357 * 179.97438 * 7 4 3 9 9 C 1.37974 * 119.84957 * 359.74162 * 7 4 3 10 10 C 1.39028 * 120.05866 * 0.52879 * 9 7 4 11 11 N 1.39457 * 119.90291 * 179.72603 * 10 9 7 12 12 C 1.34771 * 119.99871 * 338.35614 * 11 10 9 13 13 O 1.21548 * 120.00320 * 354.65303 * 12 11 10 14 14 C 1.47847 * 119.99655 * 174.91817 * 12 11 10 15 15 C 1.39935 * 120.02919 * 359.45630 * 14 12 11 16 16 C 1.38329 * 120.35768 * 179.76014 * 15 14 12 17 17 C 1.37756 * 120.41157 * 0.51233 * 16 15 14 18 18 C 1.40757 * 120.04555 * 359.74460 * 17 16 15 19 19 C 1.41431 * 120.17785 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00155 * 151.22254 * 19 18 17 21 21 C 1.39934 * 120.00062 * 331.21732 * 19 18 17 22 22 N 1.30825 * 120.00068 * 167.71342 * 21 19 18 23 23 Si 1.86809 * 119.99856 * 347.71119 * 21 19 18 24 24 H 1.48507 * 109.46763 * 95.30131 * 23 21 19 25 25 H 1.48498 * 109.46802 * 215.29764 * 23 21 19 26 26 H 1.48491 * 109.47067 * 335.29973 * 23 21 19 27 27 C 1.39020 * 120.02460 * 179.72345 * 14 12 11 28 28 H 1.09000 * 109.47226 * 269.97781 * 1 2 3 29 29 H 1.09004 * 109.46993 * 29.97494 * 1 2 3 30 30 H 1.09001 * 109.47344 * 149.97505 * 1 2 3 31 31 H 1.08005 * 120.02699 * 0.02913 * 3 2 1 32 32 H 1.08007 * 119.96930 * 180.25020 * 9 7 4 33 33 H 0.97001 * 119.99410 * 158.36234 * 11 10 9 34 34 H 1.08000 * 119.81947 * 0.02562 * 15 14 12 35 35 H 1.08002 * 119.79134 * 180.25615 * 16 15 14 36 36 H 1.07998 * 119.97511 * 179.76377 * 17 16 15 37 37 H 0.97004 * 119.99911 * 180.02562 * 22 21 19 38 38 H 1.07994 * 120.20162 * 359.96650 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1938 1.1930 0.0000 4 6 3.5917 1.1934 0.0005 5 6 4.3095 2.4326 0.0000 6 7 4.8788 3.4155 -0.0015 7 6 4.2883 -0.0217 0.0005 8 9 5.6392 -0.0276 0.0005 9 6 3.5916 -1.2126 0.0054 10 6 2.2013 -1.2061 -0.0008 11 7 1.5004 -2.4118 -0.0017 12 6 2.1016 -3.5404 -0.4273 13 8 3.2199 -3.4918 -0.9010 14 6 1.3984 -4.8368 -0.3235 15 6 0.1132 -4.8942 0.2271 16 6 -0.5529 -6.1027 0.3230 17 6 0.0449 -7.2649 -0.1125 18 6 1.3393 -7.2278 -0.6643 19 6 1.9555 -8.4192 -1.1127 20 1 2.6787 -8.3845 -1.9140 21 6 1.6281 -9.6429 -0.5182 22 7 2.0046 -10.7637 -1.0781 23 14 0.6533 -9.6760 1.0751 24 1 -0.7895 -9.8498 0.7691 25 1 1.1203 -10.8063 1.9175 26 1 0.8543 -8.3986 1.8049 27 6 2.0157 -6.0005 -0.7677 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6530 2.1279 0.0005 32 1 4.1267 -2.1508 0.0095 33 1 0.5802 -2.4379 0.3041 34 1 -0.3629 -3.9894 0.5751 35 1 -1.5462 -6.1359 0.7457 36 1 -0.4801 -8.2052 -0.0308 37 1 1.7773 -11.6120 -0.6661 38 1 3.0090 -5.9615 -1.1898 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188682365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:11 Heat of formation + Delta-G solvation = -2.456780 kcal Electronic energy + Delta-G solvation = -25200.067271 eV Core-core repulsion = 21307.863096 eV Total energy + Delta-G solvation = -3892.204175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.18346 -40.96176 -39.04706 -37.61685 -36.73242 -34.91638 -33.84285 -32.75869 -31.43553 -30.43270 -29.91122 -27.07059 -25.57552 -24.75553 -22.90299 -22.47428 -20.92579 -20.41495 -18.83801 -18.78588 -17.86371 -16.96161 -16.45784 -16.03646 -15.73789 -15.65837 -15.15429 -14.83564 -14.58165 -14.30609 -14.09625 -13.97225 -13.72317 -13.66395 -13.54906 -13.26226 -12.97093 -12.89668 -12.49614 -12.29673 -12.18718 -12.05850 -11.88386 -11.74421 -11.25158 -10.92990 -10.73118 -10.64519 -10.06647 -9.89099 -9.68769 -9.37104 -9.02231 -8.37403 -8.05126 -7.95382 -7.12707 -4.72024 0.32169 0.85870 1.59265 2.34381 2.41528 2.58837 2.85067 2.93433 3.08188 3.13445 3.24575 3.50590 3.58455 3.79342 3.85481 4.30374 4.35243 4.48489 4.70427 4.91550 5.09461 5.15891 5.24258 5.26660 5.49689 5.51053 5.63849 5.72106 5.79680 5.81849 5.93537 6.08495 6.14204 6.45219 6.46960 6.59697 6.77672 6.98042 7.15449 7.24706 7.26865 7.31523 7.56315 7.74158 8.11749 8.14432 8.33634 8.54498 9.88846 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.002692 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.322564 B =10398.453914 C =11213.323210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.140 4.140 3 C -0.017 4.017 4 C -0.097 4.097 5 C 0.262 3.738 6 N -0.419 5.419 7 C 0.170 3.830 8 F -0.125 7.125 9 C -0.180 4.180 10 C 0.228 3.772 11 N -0.666 5.666 12 C 0.565 3.435 13 O -0.514 6.514 14 C -0.113 4.113 15 C -0.219 4.219 16 C -0.079 4.079 17 C -0.218 4.218 18 C 0.079 3.921 19 C -0.433 4.433 20 H 0.095 0.905 21 C 0.079 3.921 22 N -0.801 5.801 23 Si 0.915 3.085 24 H -0.270 1.270 25 H -0.290 1.290 26 H -0.239 1.239 27 C -0.129 4.129 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.177 0.823 33 H 0.418 0.582 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.289 0.711 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.279 15.573 4.682 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.143 4.143 3 C -0.038 4.038 4 C -0.103 4.103 5 C -0.053 4.053 6 N -0.094 5.094 7 C 0.148 3.852 8 F -0.103 7.103 9 C -0.201 4.201 10 C 0.128 3.872 11 N -0.309 5.309 12 C 0.358 3.642 13 O -0.390 6.390 14 C -0.116 4.116 15 C -0.239 4.239 16 C -0.098 4.098 17 C -0.237 4.237 18 C 0.076 3.924 19 C -0.461 4.461 20 H 0.113 0.887 21 C -0.141 4.141 22 N -0.424 5.424 23 Si 0.742 3.258 24 H -0.196 1.196 25 H -0.218 1.218 26 H -0.162 1.162 27 C -0.149 4.149 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.163 0.837 32 H 0.194 0.806 33 H 0.258 0.742 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.514 16.696 4.285 17.818 hybrid contribution -0.850 -0.693 0.743 1.325 sum -5.364 16.003 5.029 17.611 Atomic orbital electron populations 1.20754 0.89667 1.03784 1.02992 1.19503 0.96911 0.90755 1.07156 1.20627 0.90395 0.98187 0.94631 1.15894 0.92753 0.85730 1.15926 1.25331 0.93600 0.92801 0.93598 1.81228 1.07632 1.11001 1.09548 1.17369 0.76958 0.92400 0.98510 1.91551 1.28386 1.97255 1.93135 1.21536 0.93442 0.99202 1.05890 1.17575 0.90587 0.85628 0.93418 1.43732 1.17333 1.06036 1.63824 1.19090 0.85589 0.83992 0.75480 1.90663 1.19291 1.86302 1.42725 1.19210 0.95648 0.90838 1.05886 1.20324 0.95555 0.96947 1.11065 1.20482 0.98120 0.92655 0.98514 1.21127 0.96268 0.96995 1.09300 1.17701 0.90955 0.93113 0.90618 1.19597 1.20909 0.89110 1.16485 0.88665 1.26232 0.93850 0.94787 0.99248 1.69640 1.36321 0.99154 1.37311 0.86265 0.79039 0.79150 0.81361 1.19630 1.21814 1.16239 1.21261 0.99301 0.90896 1.03473 0.90497 0.90464 0.91132 0.83731 0.80582 0.74199 0.88569 0.88011 0.88013 0.90075 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.44 36.00 0.34 -0.29 16 2 C -0.14 -1.15 5.89 -104.49 -0.62 -1.77 16 3 C -0.02 -0.14 9.39 -39.21 -0.37 -0.50 16 4 C -0.10 -1.01 5.75 -106.70 -0.61 -1.62 16 5 C 0.26 3.10 14.97 -22.47 -0.34 2.76 16 6 N -0.42 -5.75 18.54 41.83 0.78 -4.98 16 7 C 0.17 2.05 7.27 -39.00 -0.28 1.77 16 8 F -0.13 -1.67 16.81 2.25 0.04 -1.63 16 9 C -0.18 -2.30 8.71 -39.39 -0.34 -2.64 16 10 C 0.23 2.55 6.46 -83.75 -0.54 2.01 16 11 N -0.67 -7.93 4.97 -10.71 -0.05 -7.98 16 12 C 0.57 9.21 7.60 -12.33 -0.09 9.11 16 13 O -0.51 -9.61 13.29 5.32 0.07 -9.54 16 14 C -0.11 -2.06 5.87 -105.04 -0.62 -2.68 16 15 C -0.22 -3.59 9.54 -38.91 -0.37 -3.96 16 16 C -0.08 -1.43 10.01 -39.72 -0.40 -1.82 16 17 C -0.22 -4.60 6.87 -38.81 -0.27 -4.87 16 18 C 0.08 1.83 5.19 -106.87 -0.55 1.27 16 19 C -0.43 -10.87 9.62 -37.73 -0.36 -11.23 16 20 H 0.10 2.53 8.06 -52.49 -0.42 2.10 16 21 C 0.08 1.92 5.47 -17.35 -0.09 1.82 16 22 N -0.80 -20.09 13.93 55.55 0.77 -19.32 16 23 Si 0.91 19.03 24.36 -169.99 -4.14 14.89 16 24 H -0.27 -5.38 6.79 56.52 0.38 -5.00 16 25 H -0.29 -5.93 7.11 56.52 0.40 -5.52 16 26 H -0.24 -5.01 6.41 56.52 0.36 -4.65 16 27 C -0.13 -2.77 9.34 -38.43 -0.36 -3.13 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.07 0.40 6.90 -51.93 -0.36 0.04 16 31 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.18 2.64 5.52 -52.48 -0.29 2.35 16 33 H 0.42 3.85 5.26 -40.82 -0.21 3.63 16 34 H 0.10 1.17 6.40 -52.49 -0.34 0.84 16 35 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.10 2.15 4.14 -52.49 -0.22 1.93 16 37 H 0.29 6.53 8.30 -40.82 -0.34 6.19 16 38 H 0.12 2.58 7.64 -52.49 -0.40 2.18 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -27.51 334.13 -6.50 -34.01 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.12 Total: 5.30 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -5.88 Total: -15.77 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 1.50 Total: -32.28 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.14 Total: 14.89 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.51 -6.50 -34.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.551 kcal (2) G-P(sol) polarization free energy of solvation -27.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds