Wall clock time and date at job start Tue Mar 31 2020 13:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37658 * 119.93011 * 2 1 4 4 C 1.39796 * 119.94815 * 179.97438 * 3 2 1 5 5 C 1.43202 * 120.09833 * 179.97438 * 4 3 2 6 6 N 4.79953 * 134.63150 * 359.97438 * 2 1 3 7 7 C 1.40060 * 119.80427 * 0.02562 * 4 3 2 8 8 F 1.35092 * 120.07357 * 179.97438 * 7 4 3 9 9 C 1.37974 * 119.84957 * 359.74162 * 7 4 3 10 10 C 1.39028 * 120.05866 * 0.52879 * 9 7 4 11 11 N 1.39457 * 119.90291 * 179.72603 * 10 9 7 12 12 C 1.34771 * 119.99871 * 338.35614 * 11 10 9 13 13 O 1.21548 * 120.00320 * 354.65303 * 12 11 10 14 14 C 1.47847 * 119.99655 * 174.91817 * 12 11 10 15 15 C 1.39935 * 120.02919 * 359.45630 * 14 12 11 16 16 C 1.38329 * 120.35768 * 179.76014 * 15 14 12 17 17 C 1.37756 * 120.41157 * 0.51233 * 16 15 14 18 18 C 1.40757 * 120.04555 * 359.74460 * 17 16 15 19 19 C 1.41431 * 120.17785 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00155 * 151.22254 * 19 18 17 21 21 C 1.39934 * 120.00062 * 331.21732 * 19 18 17 22 22 N 1.30825 * 120.00068 * 167.71342 * 21 19 18 23 23 Si 1.86809 * 119.99856 * 347.71119 * 21 19 18 24 24 H 1.48507 * 109.46763 * 95.30131 * 23 21 19 25 25 H 1.48498 * 109.46802 * 215.29764 * 23 21 19 26 26 H 1.48491 * 109.47067 * 335.29973 * 23 21 19 27 27 C 1.39020 * 120.02460 * 179.72345 * 14 12 11 28 28 H 1.09000 * 109.47226 * 269.97781 * 1 2 3 29 29 H 1.09004 * 109.46993 * 29.97494 * 1 2 3 30 30 H 1.09001 * 109.47344 * 149.97505 * 1 2 3 31 31 H 1.08005 * 120.02699 * 0.02913 * 3 2 1 32 32 H 1.08007 * 119.96930 * 180.25020 * 9 7 4 33 33 H 0.97001 * 119.99410 * 158.36234 * 11 10 9 34 34 H 1.08000 * 119.81947 * 0.02562 * 15 14 12 35 35 H 1.08002 * 119.79134 * 180.25615 * 16 15 14 36 36 H 1.07998 * 119.97511 * 179.76377 * 17 16 15 37 37 H 0.97004 * 119.99911 * 180.02562 * 22 21 19 38 38 H 1.07994 * 120.20162 * 359.96650 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1938 1.1930 0.0000 4 6 3.5917 1.1934 0.0005 5 6 4.3095 2.4326 0.0000 6 7 4.8788 3.4155 -0.0015 7 6 4.2883 -0.0217 0.0005 8 9 5.6392 -0.0276 0.0005 9 6 3.5916 -1.2126 0.0054 10 6 2.2013 -1.2061 -0.0008 11 7 1.5004 -2.4118 -0.0017 12 6 2.1016 -3.5404 -0.4273 13 8 3.2199 -3.4918 -0.9010 14 6 1.3984 -4.8368 -0.3235 15 6 0.1132 -4.8942 0.2271 16 6 -0.5529 -6.1027 0.3230 17 6 0.0449 -7.2649 -0.1125 18 6 1.3393 -7.2278 -0.6643 19 6 1.9555 -8.4192 -1.1127 20 1 2.6787 -8.3845 -1.9140 21 6 1.6281 -9.6429 -0.5182 22 7 2.0046 -10.7637 -1.0781 23 14 0.6533 -9.6760 1.0751 24 1 -0.7895 -9.8498 0.7691 25 1 1.1203 -10.8063 1.9175 26 1 0.8543 -8.3986 1.8049 27 6 2.0157 -6.0005 -0.7677 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6530 2.1279 0.0005 32 1 4.1267 -2.1508 0.0095 33 1 0.5802 -2.4379 0.3041 34 1 -0.3629 -3.9894 0.5751 35 1 -1.5462 -6.1359 0.7457 36 1 -0.4801 -8.2052 -0.0308 37 1 1.7773 -11.6120 -0.6661 38 1 3.0090 -5.9615 -1.1898 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188682365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:10 Heat of formation + Delta-G solvation = -17.891871 kcal Electronic energy + Delta-G solvation = -25200.736587 eV Core-core repulsion = 21307.863096 eV Total energy + Delta-G solvation = -3892.873491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.16890 -42.04424 -40.17187 -39.08128 -37.75960 -36.03925 -35.51785 -33.47866 -32.84714 -31.93819 -31.11805 -27.72683 -27.16629 -25.96748 -24.11163 -23.36972 -22.48941 -21.74070 -20.02492 -19.70539 -19.10998 -18.27643 -17.84449 -17.15217 -16.88724 -16.73028 -16.44439 -16.27029 -15.63051 -15.53664 -15.44951 -14.95957 -14.67596 -14.57088 -14.55899 -14.42340 -14.37305 -14.10445 -13.87403 -13.41853 -13.19282 -12.98046 -12.83816 -12.72483 -12.67530 -12.54670 -12.32184 -11.67709 -11.63724 -11.56531 -11.17664 -10.85410 -9.87898 -9.64768 -9.62739 -9.18509 -8.89105 -6.56784 -0.59679 0.04855 0.16387 0.75411 1.26146 1.43886 1.46896 1.49558 1.58293 1.79080 1.96905 2.11235 2.57671 2.67560 2.69014 2.96961 3.44320 3.51268 3.75422 3.81728 4.00697 4.22678 4.28985 4.41238 4.51373 4.54976 4.73067 4.85027 4.85379 4.91689 4.96167 4.99065 5.07877 5.13876 5.27378 5.38370 5.41359 5.60804 5.68896 5.70291 5.84197 6.06433 6.27365 6.31505 6.35413 6.63601 6.73231 6.94662 8.19659 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.002692 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.322564 B =10398.453914 C =11213.323210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 C 0.000 4.000 4 C -0.091 4.091 5 C 0.280 3.720 6 N -0.453 5.453 7 C 0.152 3.848 8 F -0.141 7.141 9 C -0.195 4.195 10 C 0.212 3.788 11 N -0.643 5.643 12 C 0.567 3.433 13 O -0.547 6.547 14 C -0.114 4.114 15 C -0.175 4.175 16 C -0.081 4.081 17 C -0.220 4.220 18 C 0.062 3.938 19 C -0.483 4.483 20 H 0.048 0.952 21 C 0.036 3.964 22 N -0.856 5.856 23 Si 0.973 3.027 24 H -0.248 1.248 25 H -0.286 1.286 26 H -0.239 1.239 27 C -0.160 4.160 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.186 0.814 32 H 0.147 0.853 33 H 0.435 0.565 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.103 0.897 37 H 0.294 0.706 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.190 19.639 7.118 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.117 4.117 3 C -0.020 4.020 4 C -0.097 4.097 5 C -0.035 4.035 6 N -0.129 5.129 7 C 0.129 3.871 8 F -0.120 7.120 9 C -0.217 4.217 10 C 0.113 3.887 11 N -0.288 5.288 12 C 0.359 3.641 13 O -0.426 6.426 14 C -0.118 4.118 15 C -0.194 4.194 16 C -0.099 4.099 17 C -0.240 4.240 18 C 0.060 3.940 19 C -0.513 4.513 20 H 0.067 0.933 21 C -0.177 4.177 22 N -0.482 5.482 23 Si 0.796 3.204 24 H -0.173 1.173 25 H -0.214 1.214 26 H -0.162 1.162 27 C -0.181 4.181 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.203 0.797 32 H 0.164 0.836 33 H 0.278 0.722 34 H 0.176 0.824 35 H 0.169 0.831 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.457 20.810 6.727 23.828 hybrid contribution 0.615 -1.544 -0.010 1.662 sum -8.842 19.266 6.717 22.237 Atomic orbital electron populations 1.20953 0.86603 1.05137 1.04890 1.19842 0.98744 0.89114 1.03981 1.21089 0.89009 0.99782 0.92137 1.15991 0.93819 0.84138 1.15731 1.25468 0.92855 0.92579 0.92581 1.81252 1.08504 1.12346 1.10818 1.17477 0.76424 0.93027 1.00129 1.91508 1.29634 1.97353 1.93484 1.21318 0.94634 0.98283 1.07420 1.17692 0.89917 0.86276 0.94818 1.43313 1.17711 1.04969 1.62831 1.18777 0.85078 0.84571 0.75709 1.90688 1.20806 1.86805 1.44276 1.19469 0.96689 0.90781 1.04821 1.21061 0.93535 0.98959 1.05879 1.21053 1.00047 0.91475 0.97346 1.21365 0.95239 0.98830 1.08528 1.17772 0.92170 0.92601 0.91507 1.19513 1.22586 0.91357 1.17823 0.93349 1.27009 0.94777 0.93946 1.01960 1.69699 1.39436 0.99793 1.39306 0.85411 0.78712 0.79003 0.77320 1.17317 1.21376 1.16200 1.21179 0.99009 0.92307 1.05567 0.88106 0.88202 0.90842 0.79681 0.83587 0.72204 0.82406 0.83104 0.87908 0.89545 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.44 9.44 71.23 0.67 0.23 16 2 C -0.11 -1.27 5.89 -19.78 -0.12 -1.39 16 3 C 0.00 0.00 9.39 22.51 0.21 0.22 16 4 C -0.09 -1.65 5.75 -21.21 -0.12 -1.77 16 5 C 0.28 6.08 14.97 88.33 1.32 7.40 16 6 N -0.45 -11.86 18.54 19.00 0.35 -11.51 16 7 C 0.15 3.58 7.27 22.65 0.16 3.75 16 8 F -0.14 -3.92 16.81 44.97 0.76 -3.16 16 9 C -0.20 -4.92 8.71 22.40 0.20 -4.73 16 10 C 0.21 4.07 6.46 38.34 0.25 4.32 16 11 N -0.64 -12.81 4.97 -306.09 -1.52 -14.33 16 12 C 0.57 17.64 7.60 86.79 0.66 18.30 16 13 O -0.55 -21.18 13.29 -3.87 -0.05 -21.23 16 14 C -0.11 -3.98 5.87 -20.14 -0.12 -4.10 16 15 C -0.18 -4.73 9.54 22.70 0.22 -4.51 16 16 C -0.08 -2.48 10.01 22.18 0.22 -2.26 16 17 C -0.22 -8.92 6.87 22.77 0.16 -8.76 16 18 C 0.06 2.97 5.19 -21.32 -0.11 2.86 16 19 C -0.48 -26.60 9.62 23.47 0.23 -26.38 16 20 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 21 C 0.04 1.90 5.47 85.25 0.47 2.37 16 22 N -0.86 -46.43 13.93 21.82 0.30 -46.13 16 23 Si 0.97 39.62 24.36 68.60 1.67 41.29 16 24 H -0.25 -9.13 6.79 99.48 0.68 -8.46 16 25 H -0.29 -11.30 7.11 99.48 0.71 -10.60 16 26 H -0.24 -9.52 6.41 99.48 0.64 -8.88 16 27 C -0.16 -7.19 9.34 23.01 0.21 -6.98 16 28 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.10 0.04 8.08 -2.38 -0.02 0.02 16 30 H 0.07 0.30 6.90 -2.39 -0.02 0.28 16 31 H 0.19 0.58 8.06 -2.91 -0.02 0.55 16 32 H 0.15 4.65 5.52 -2.91 -0.02 4.63 16 33 H 0.43 5.19 5.26 -92.71 -0.49 4.70 16 34 H 0.16 2.39 6.40 -2.91 -0.02 2.38 16 35 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 36 H 0.10 4.13 4.14 -2.91 -0.01 4.12 16 37 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 38 H 0.09 4.46 7.64 -2.91 -0.02 4.44 16 Total: -1.00 -70.22 334.13 6.59 -63.63 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.57 Total: 12.87 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 4.51 Total: -21.43 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -0.87 Total: -71.96 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.76 Total: -3.16 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.67 Total: 41.29 kcal Total: -70.22 6.59 -63.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.739 kcal (2) G-P(sol) polarization free energy of solvation -70.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds