Wall clock time and date at job start Tue Mar 31 2020 14:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46862 * 2 1 4 4 C 1.52991 * 109.47525 * 239.99697 * 2 1 3 5 5 C 1.50701 * 109.46893 * 119.99428 * 2 1 3 6 6 C 1.38569 * 125.50819 * 75.02341 * 5 2 1 7 7 C 1.39014 * 107.64348 * 179.97438 * 6 5 2 8 8 N 1.33939 * 132.46058 * 179.97438 * 7 6 5 9 9 C 1.31174 * 120.93932 * 180.02562 * 8 7 6 10 10 C 1.40754 * 120.21818 * 0.02562 * 9 8 7 11 11 N 1.40161 * 120.34979 * 180.02562 * 10 9 8 12 12 S 1.65599 * 120.00069 * 44.99602 * 11 10 9 13 13 O 1.42093 * 106.40255 * 178.54203 * 12 11 10 14 14 O 1.42100 * 106.40492 * 311.46438 * 12 11 10 15 15 C 1.76201 * 107.21470 * 65.00273 * 12 11 10 16 16 H 1.08005 * 120.00225 * 0.02562 * 15 12 11 17 17 C 1.37883 * 119.99982 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99857 * 180.02562 * 17 15 12 19 19 Si 1.86794 * 120.00028 * 0.02562 * 17 15 12 20 20 H 1.48497 * 109.47563 * 89.99813 * 19 17 15 21 21 H 1.48498 * 109.47378 * 210.00106 * 19 17 15 22 22 H 1.48508 * 109.47102 * 329.99538 * 19 17 15 23 23 C 1.36061 * 119.30234 * 359.97438 * 10 9 8 24 24 N 1.36721 * 119.03572 * 0.03739 * 23 10 9 25 25 N 1.31483 * 125.51002 * 254.97481 * 5 2 1 26 26 H 1.09000 * 109.46874 * 300.00312 * 1 2 3 27 27 H 1.08995 * 109.46853 * 60.00243 * 1 2 3 28 28 H 1.08996 * 109.46812 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47187 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46933 * 299.99477 * 3 2 1 31 31 H 1.08994 * 109.47653 * 59.99718 * 3 2 1 32 32 H 1.09007 * 109.46795 * 300.00054 * 4 2 1 33 33 H 1.09004 * 109.47194 * 59.99957 * 4 2 1 34 34 H 1.08995 * 109.47468 * 180.02562 * 4 2 1 35 35 H 1.07998 * 126.17798 * 359.97438 * 6 5 2 36 36 H 1.08004 * 119.88795 * 179.72626 * 9 8 7 37 37 H 0.96999 * 120.00132 * 225.00854 * 11 10 9 38 38 H 0.97002 * 119.99834 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.48361 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 6 2.0258 -2.0820 1.4271 7 6 2.5712 -2.3305 2.6814 8 7 2.7973 -3.4623 3.3610 9 6 3.3353 -3.4348 4.5570 10 6 3.6849 -2.2063 5.1485 11 7 4.2603 -2.1737 6.4261 12 16 5.4755 -3.2297 6.8140 13 8 5.8622 -2.9244 8.1468 14 8 5.0325 -4.5177 6.4090 15 6 6.8558 -2.8344 5.7926 16 1 6.7874 -2.0235 5.0824 17 6 8.0235 -3.5595 5.9007 18 7 9.0539 -3.2641 5.1386 19 14 8.1421 -4.9614 7.1294 20 1 7.7093 -6.2256 6.4815 21 1 9.5469 -5.0976 7.5911 22 1 7.2643 -4.6757 8.2927 23 6 3.4593 -1.0508 4.4665 24 7 2.8969 -1.1138 3.2219 25 7 2.5485 -0.1288 2.2908 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6768 -1.7490 -1.2490 33 1 1.6768 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2489 35 1 1.6625 -2.8239 0.7315 36 1 3.5060 -4.3575 5.0917 37 1 3.9467 -1.5328 7.0831 38 1 9.8753 -3.7745 5.2144 39 1 3.7205 -0.0976 4.9019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192942773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:11 Heat of formation + Delta-G solvation = 32.010164 kcal Electronic energy + Delta-G solvation = -25227.496410 eV Core-core repulsion = 21492.150747 eV Total energy + Delta-G solvation = -3735.345663 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.18352 -38.89834 -36.65866 -35.94544 -35.00343 -34.81802 -33.21638 -32.87638 -29.69997 -28.27050 -27.40878 -27.16235 -26.60379 -24.67013 -23.14093 -21.90949 -19.66486 -19.22873 -18.36160 -17.58947 -17.33426 -16.91724 -16.38547 -15.85385 -15.30899 -15.13540 -14.85548 -14.28441 -14.24270 -14.04546 -13.60394 -13.41988 -13.21434 -13.03710 -12.68320 -12.32572 -12.26804 -11.94822 -11.79210 -11.60246 -11.49966 -11.40718 -11.32552 -11.18840 -10.97242 -10.92715 -10.77915 -10.65451 -10.31019 -10.07460 -9.64715 -9.35963 -9.29811 -8.73869 -7.61532 -6.95118 -5.54431 0.66989 0.99182 1.57850 2.21306 2.66413 2.96695 3.06990 3.13391 3.56703 3.75940 3.82466 4.01026 4.11985 4.43130 4.45660 4.66282 4.73458 4.83827 4.97373 5.12392 5.18599 5.42782 5.46126 5.47427 5.59224 5.65358 5.71071 5.74739 5.76525 5.84206 5.91854 6.00848 6.06410 6.16527 6.20261 6.32286 6.50599 6.67463 7.16922 7.31739 7.59196 7.78950 8.02293 8.52466 10.16811 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.023877 B = 0.003375 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.412527 B = 8293.257113 C = 8602.445444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.013 3.987 3 C -0.137 4.137 4 C -0.139 4.139 5 C 0.119 3.881 6 C -0.264 4.264 7 C 0.251 3.749 8 N -0.448 5.448 9 C 0.176 3.824 10 C 0.082 3.918 11 N -1.047 6.047 12 S 2.666 3.334 13 O -0.989 6.989 14 O -0.998 6.998 15 C -1.014 5.014 16 H 0.122 0.878 17 C 0.154 3.846 18 N -0.814 5.814 19 Si 0.802 3.198 20 H -0.243 1.243 21 H -0.253 1.253 22 H -0.220 1.220 23 C 0.125 3.875 24 N -0.296 5.296 25 N -0.311 5.311 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.157 0.843 36 H 0.212 0.788 37 H 0.420 0.580 38 H 0.284 0.716 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.958 5.771 -7.359 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.010 3.990 3 C -0.195 4.195 4 C -0.197 4.197 5 C -0.038 4.038 6 C -0.295 4.295 7 C 0.022 3.978 8 N -0.158 5.158 9 C -0.011 4.011 10 C -0.021 4.021 11 N -0.794 5.794 12 S 2.769 3.231 13 O -0.979 6.979 14 O -0.987 6.987 15 C -1.149 5.149 16 H 0.140 0.860 17 C -0.067 4.067 18 N -0.443 5.443 19 Si 0.622 3.378 20 H -0.166 1.166 21 H -0.176 1.176 22 H -0.142 1.142 23 C -0.014 4.014 24 N -0.066 5.066 25 N -0.137 5.137 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.175 0.825 36 H 0.228 0.772 37 H 0.255 0.745 38 H 0.094 0.906 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -13.788 5.425 -6.934 16.359 hybrid contribution 0.729 0.132 0.466 0.875 sum -13.059 5.556 -6.468 15.597 Atomic orbital electron populations 1.21857 0.92907 1.02543 1.02130 1.19066 0.95672 0.94986 0.89239 1.21803 1.01627 0.94092 1.01946 1.21883 1.01694 1.00577 0.95530 1.22016 0.95044 0.92485 0.94304 1.20650 1.16867 0.95682 0.96268 1.20859 0.99710 0.81394 0.95791 1.68339 1.15401 1.24667 1.07423 1.24655 0.87391 0.99050 0.90046 1.17604 1.02653 0.93255 0.88636 1.53569 1.53435 1.56085 1.16320 1.01917 0.73974 0.72454 0.74749 1.93522 1.81878 1.84242 1.38298 1.93359 1.82109 1.39362 1.83905 1.30212 1.14632 1.30504 1.39584 0.85989 1.24414 0.93865 0.94989 0.93406 1.69972 1.03094 1.37109 1.34080 0.87847 0.82535 0.84004 0.83422 1.16608 1.17646 1.14237 1.21779 0.96258 1.01083 0.82301 1.46907 1.39712 1.07974 1.12018 1.77814 1.26670 1.09245 0.99924 0.92434 0.91710 0.91960 0.92244 0.92289 0.91940 0.91804 0.91767 0.92153 0.82492 0.77206 0.74488 0.90574 0.80182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.46 37.16 0.31 -0.86 16 2 C 0.01 0.13 0.96 -155.66 -0.15 -0.02 16 3 C -0.14 -1.37 8.02 37.16 0.30 -1.07 16 4 C -0.14 -1.25 8.19 37.15 0.30 -0.94 16 5 C 0.12 1.70 5.62 -82.62 -0.46 1.23 16 6 C -0.26 -4.01 10.17 -39.17 -0.40 -4.41 16 7 C 0.25 4.42 7.92 -155.60 -1.23 3.19 16 8 N -0.45 -8.17 10.47 -12.08 -0.13 -8.29 16 9 C 0.18 3.16 10.41 -16.88 -0.18 2.98 16 10 C 0.08 1.38 6.20 -83.88 -0.52 0.86 16 11 N -1.05 -17.46 5.79 32.34 0.19 -17.27 16 12 S 2.67 59.48 4.17 -107.50 -0.45 59.03 16 13 O -0.99 -23.84 16.02 -57.17 -0.92 -24.75 16 14 O -1.00 -23.04 13.80 -57.17 -0.79 -23.83 16 15 C -1.01 -26.57 10.22 30.60 0.31 -26.26 16 16 H 0.12 3.29 8.06 -52.48 -0.42 2.87 16 17 C 0.15 4.21 5.47 -17.82 -0.10 4.11 16 18 N -0.81 -22.70 13.96 55.43 0.77 -21.93 16 19 Si 0.80 19.32 26.54 -169.99 -4.51 14.81 16 20 H -0.24 -5.69 7.11 56.52 0.40 -5.28 16 21 H -0.25 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.22 -5.31 5.61 56.52 0.32 -4.99 16 23 C 0.13 1.96 11.23 -16.15 -0.18 1.78 16 24 N -0.30 -5.06 3.90 -12.02 -0.05 -5.11 16 25 N -0.31 -5.04 11.95 33.52 0.40 -4.64 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 32 H 0.06 0.55 7.48 -51.92 -0.39 0.16 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.16 2.03 7.66 -52.49 -0.40 1.63 16 36 H 0.21 3.78 5.67 -52.48 -0.30 3.48 16 37 H 0.42 5.41 8.96 -34.47 -0.31 5.10 16 38 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -31.78 338.52 -7.20 -38.98 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -4.84 Total: 7.30 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -1.99 Total: -19.40 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 1.19 Total: -57.24 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -1.70 Total: -48.58 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.51 Total: 14.81 kcal Atomic # 16 Polarization: 59.48 SS G_CDS: -0.45 Total: 59.03 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.78 -7.20 -38.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192942773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.990 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds