Wall clock time and date at job start Tue Mar 31 2020 14:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46862 * 2 1 4 4 C 1.52991 * 109.47525 * 239.99697 * 2 1 3 5 5 C 1.50701 * 109.46893 * 119.99428 * 2 1 3 6 6 C 1.38569 * 125.50819 * 75.02341 * 5 2 1 7 7 C 1.39014 * 107.64348 * 179.97438 * 6 5 2 8 8 N 1.33939 * 132.46058 * 179.97438 * 7 6 5 9 9 C 1.31174 * 120.93932 * 180.02562 * 8 7 6 10 10 C 1.40754 * 120.21818 * 0.02562 * 9 8 7 11 11 N 1.40161 * 120.34979 * 180.02562 * 10 9 8 12 12 S 1.65599 * 120.00069 * 44.99602 * 11 10 9 13 13 O 1.42093 * 106.40255 * 178.54203 * 12 11 10 14 14 O 1.42100 * 106.40492 * 311.46438 * 12 11 10 15 15 C 1.76201 * 107.21470 * 65.00273 * 12 11 10 16 16 H 1.08005 * 120.00225 * 0.02562 * 15 12 11 17 17 C 1.37883 * 119.99982 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99857 * 180.02562 * 17 15 12 19 19 Si 1.86794 * 120.00028 * 0.02562 * 17 15 12 20 20 H 1.48497 * 109.47563 * 89.99813 * 19 17 15 21 21 H 1.48498 * 109.47378 * 210.00106 * 19 17 15 22 22 H 1.48508 * 109.47102 * 329.99538 * 19 17 15 23 23 C 1.36061 * 119.30234 * 359.97438 * 10 9 8 24 24 N 1.36721 * 119.03572 * 0.03739 * 23 10 9 25 25 N 1.31483 * 125.51002 * 254.97481 * 5 2 1 26 26 H 1.09000 * 109.46874 * 300.00312 * 1 2 3 27 27 H 1.08995 * 109.46853 * 60.00243 * 1 2 3 28 28 H 1.08996 * 109.46812 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47187 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46933 * 299.99477 * 3 2 1 31 31 H 1.08994 * 109.47653 * 59.99718 * 3 2 1 32 32 H 1.09007 * 109.46795 * 300.00054 * 4 2 1 33 33 H 1.09004 * 109.47194 * 59.99957 * 4 2 1 34 34 H 1.08995 * 109.47468 * 180.02562 * 4 2 1 35 35 H 1.07998 * 126.17798 * 359.97438 * 6 5 2 36 36 H 1.08004 * 119.88795 * 179.72626 * 9 8 7 37 37 H 0.96999 * 120.00132 * 225.00854 * 11 10 9 38 38 H 0.97002 * 119.99834 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.48361 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 6 2.0258 -2.0820 1.4271 7 6 2.5712 -2.3305 2.6814 8 7 2.7973 -3.4623 3.3610 9 6 3.3353 -3.4348 4.5570 10 6 3.6849 -2.2063 5.1485 11 7 4.2603 -2.1737 6.4261 12 16 5.4755 -3.2297 6.8140 13 8 5.8622 -2.9244 8.1468 14 8 5.0325 -4.5177 6.4090 15 6 6.8558 -2.8344 5.7926 16 1 6.7874 -2.0235 5.0824 17 6 8.0235 -3.5595 5.9007 18 7 9.0539 -3.2641 5.1386 19 14 8.1421 -4.9614 7.1294 20 1 7.7093 -6.2256 6.4815 21 1 9.5469 -5.0976 7.5911 22 1 7.2643 -4.6757 8.2927 23 6 3.4593 -1.0508 4.4665 24 7 2.8969 -1.1138 3.2219 25 7 2.5485 -0.1288 2.2908 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6768 -1.7490 -1.2490 33 1 1.6768 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2489 35 1 1.6625 -2.8239 0.7315 36 1 3.5060 -4.3575 5.0917 37 1 3.9467 -1.5328 7.0831 38 1 9.8753 -3.7745 5.2144 39 1 3.7205 -0.0976 4.9019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192942773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:10 Heat of formation + Delta-G solvation = 9.314786 kcal Electronic energy + Delta-G solvation = -25228.480555 eV Core-core repulsion = 21492.150747 eV Total energy + Delta-G solvation = -3736.329809 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.44190 -40.10138 -37.95515 -37.50783 -36.68101 -36.34729 -35.23829 -34.13807 -30.95611 -29.51271 -28.63005 -28.08988 -27.99951 -25.95940 -24.37757 -23.05602 -21.38777 -20.38571 -20.03885 -19.14866 -18.69665 -18.41679 -17.86302 -17.27628 -16.96106 -16.35132 -16.07139 -15.84956 -15.49093 -15.08263 -15.00421 -14.92032 -14.74240 -14.36016 -13.96290 -13.63670 -13.42140 -13.14275 -13.09664 -12.99274 -12.78942 -12.72274 -12.63911 -12.51989 -12.43356 -12.16724 -12.05241 -11.90510 -11.64982 -11.52804 -11.35607 -11.17684 -10.93025 -10.11001 -8.99662 -8.88339 -7.60203 -0.63957 -0.42567 -0.02967 0.93266 1.07181 1.16907 1.21618 1.49765 1.87914 2.18137 2.25040 2.40481 2.75339 2.93039 3.13200 3.17861 3.64786 3.73692 3.88968 4.06715 4.09277 4.23049 4.29552 4.38325 4.61584 4.69903 4.80474 4.83749 4.93356 4.95395 5.03916 5.05703 5.11631 5.23578 5.26476 5.32710 5.45737 5.46238 5.56210 5.91170 5.96299 6.36480 6.45624 6.48704 8.17993 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.023877 B = 0.003375 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.412527 B = 8293.257113 C = 8602.445444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.010 3.990 3 C -0.135 4.135 4 C -0.137 4.137 5 C 0.125 3.875 6 C -0.261 4.261 7 C 0.222 3.778 8 N -0.462 5.462 9 C 0.163 3.837 10 C 0.064 3.936 11 N -1.028 6.028 12 S 2.699 3.301 13 O -1.005 7.005 14 O -1.005 7.005 15 C -1.039 5.039 16 H 0.101 0.899 17 C 0.108 3.892 18 N -0.853 5.853 19 Si 0.827 3.173 20 H -0.234 1.234 21 H -0.224 1.224 22 H -0.220 1.220 23 C 0.140 3.860 24 N -0.310 5.310 25 N -0.324 5.324 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.178 0.822 36 H 0.207 0.793 37 H 0.439 0.561 38 H 0.292 0.708 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.490 6.379 -8.177 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 C -0.192 4.192 4 C -0.195 4.195 5 C -0.034 4.034 6 C -0.292 4.292 7 C -0.005 4.005 8 N -0.173 5.173 9 C -0.024 4.024 10 C -0.039 4.039 11 N -0.780 5.780 12 S 2.800 3.200 13 O -0.995 6.995 14 O -0.995 6.995 15 C -1.172 5.172 16 H 0.119 0.881 17 C -0.109 4.109 18 N -0.483 5.483 19 Si 0.644 3.356 20 H -0.158 1.158 21 H -0.147 1.147 22 H -0.142 1.142 23 C 0.000 4.000 24 N -0.080 5.080 25 N -0.150 5.150 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.195 0.805 36 H 0.223 0.777 37 H 0.279 0.721 38 H 0.103 0.897 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -15.295 6.042 -7.754 18.181 hybrid contribution 1.075 0.075 0.548 1.210 sum -14.219 6.117 -7.206 17.074 Atomic orbital electron populations 1.21851 0.91126 1.03028 1.03029 1.19334 0.96966 0.94938 0.87962 1.21796 1.00599 0.93984 1.02848 1.21901 1.00797 1.01097 0.95724 1.22755 0.93425 0.92382 0.94794 1.21067 1.15788 0.96651 0.95691 1.21257 1.00871 0.81593 0.96823 1.68295 1.15977 1.25338 1.07649 1.24624 0.87979 0.99455 0.90339 1.17481 1.04191 0.93444 0.88791 1.52841 1.52001 1.56145 1.17058 1.00818 0.73308 0.72515 0.73401 1.93495 1.82712 1.84751 1.38549 1.93352 1.82012 1.40207 1.83910 1.30838 1.16676 1.29776 1.39898 0.88096 1.25210 0.93942 0.96957 0.94781 1.70018 1.03965 1.38637 1.35659 0.87451 0.84318 0.82016 0.81860 1.15751 1.14664 1.14241 1.22194 0.94119 1.01936 0.81730 1.47114 1.40331 1.08035 1.12518 1.77811 1.27186 1.09472 1.00485 0.93333 0.89039 0.91717 0.93826 0.89512 0.92936 0.91356 0.89085 0.93597 0.80500 0.77703 0.72136 0.89733 0.77128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.46 71.98 0.61 -1.29 16 2 C 0.01 0.19 0.96 -52.93 -0.05 0.14 16 3 C -0.13 -2.41 8.02 71.98 0.58 -1.83 16 4 C -0.14 -2.10 8.19 71.98 0.59 -1.51 16 5 C 0.12 3.38 5.62 42.69 0.24 3.62 16 6 C -0.26 -7.67 10.17 22.53 0.23 -7.44 16 7 C 0.22 7.77 7.92 133.22 1.06 8.82 16 8 N -0.46 -16.97 10.47 -192.15 -2.01 -18.99 16 9 C 0.16 5.91 10.41 85.41 0.89 6.80 16 10 C 0.06 2.14 6.20 37.92 0.23 2.37 16 11 N -1.03 -33.47 5.79 -51.60 -0.30 -33.77 16 12 S 2.70 119.29 4.17 -56.49 -0.24 119.05 16 13 O -1.00 -47.46 16.02 -128.00 -2.05 -49.51 16 14 O -1.01 -46.06 13.80 -128.00 -1.77 -47.83 16 15 C -1.04 -55.29 10.22 67.74 0.69 -54.59 16 16 H 0.10 5.62 8.06 -2.91 -0.02 5.60 16 17 C 0.11 5.97 5.47 84.66 0.46 6.44 16 18 N -0.85 -48.34 13.96 21.45 0.30 -48.04 16 19 Si 0.83 38.68 26.54 68.60 1.82 40.50 16 20 H -0.23 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.22 -9.40 7.11 99.48 0.71 -8.69 16 22 H -0.22 -10.27 5.61 99.48 0.56 -9.71 16 23 C 0.14 4.27 11.23 83.42 0.94 5.21 16 24 N -0.31 -10.42 3.90 -191.96 -0.75 -11.17 16 25 N -0.32 -10.23 11.95 -47.87 -0.57 -10.80 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.05 1.04 8.07 -2.39 -0.02 1.02 16 32 H 0.07 0.98 7.48 -2.38 -0.02 0.97 16 33 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.18 4.30 7.66 -2.91 -0.02 4.27 16 36 H 0.21 7.51 5.67 -2.91 -0.02 7.49 16 37 H 0.44 10.65 8.96 -96.75 -0.87 9.78 16 38 H 0.29 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.21 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -68.80 338.52 0.98 -67.83 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.08 Total: 25.98 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 6.47 Total: -33.26 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -3.33 Total: -122.76 kcal Atomic # 8 Polarization: -93.52 SS G_CDS: -3.82 Total: -97.34 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.82 Total: 40.50 kcal Atomic # 16 Polarization: 119.29 SS G_CDS: -0.24 Total: 119.05 kcal Total: -68.80 0.98 -67.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192942773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.143 kcal (2) G-P(sol) polarization free energy of solvation -68.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds