Wall clock time and date at job start Tue Mar 31 2020 14:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47568 * 2 1 4 4 C 1.53003 * 109.46960 * 119.99874 * 2 1 3 5 5 C 1.50697 * 109.46912 * 239.99734 * 2 1 3 6 6 C 1.38577 * 126.17711 * 0.02582 * 5 2 1 7 7 N 1.31486 * 108.98024 * 180.02562 * 6 5 2 8 8 N 1.39942 * 108.83652 * 0.02562 * 7 6 5 9 9 C 1.36725 * 132.49611 * 180.02562 * 8 7 6 10 10 C 1.36065 * 119.03732 * 179.97438 * 9 8 7 11 11 N 1.40161 * 120.34846 * 179.97438 * 10 9 8 12 12 S 1.65596 * 119.99963 * 255.17827 * 11 10 9 13 13 O 1.42099 * 106.40413 * 177.75722 * 12 11 10 14 14 O 1.42105 * 106.40379 * 310.67363 * 12 11 10 15 15 C 1.76199 * 107.22026 * 64.21521 * 12 11 10 16 16 H 1.07993 * 119.99914 * 4.86666 * 15 12 11 17 17 C 1.37880 * 119.99727 * 184.86540 * 15 12 11 18 18 N 1.31512 * 120.00337 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99676 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47317 * 89.99838 * 19 17 15 21 21 H 1.48504 * 109.47110 * 210.00049 * 19 17 15 22 22 H 1.48499 * 109.47476 * 330.00130 * 19 17 15 23 23 C 1.40755 * 119.29958 * 359.97438 * 10 9 8 24 24 N 1.31167 * 120.22070 * 359.97438 * 23 10 9 25 25 C 1.33936 * 120.94170 * 359.74282 * 24 23 10 26 26 H 1.08998 * 109.47552 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46884 * 59.99799 * 1 2 3 28 28 H 1.09008 * 109.47032 * 300.00259 * 1 2 3 29 29 H 1.09000 * 109.47282 * 60.00070 * 3 2 1 30 30 H 1.09000 * 109.47368 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47182 * 300.00019 * 3 2 1 32 32 H 1.09009 * 109.47151 * 60.00052 * 4 2 1 33 33 H 1.08996 * 109.46989 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47509 * 300.00033 * 4 2 1 35 35 H 1.07994 * 125.50698 * 0.02562 * 6 5 2 36 36 H 1.08001 * 120.47631 * 359.97438 * 9 8 7 37 37 H 0.97003 * 119.99849 * 75.17417 * 11 10 9 38 38 H 0.97003 * 120.00043 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.89094 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0323 -0.7105 -1.2304 6 6 1.2503 -1.2821 -2.2214 7 7 2.0354 -1.8101 -3.1344 8 7 3.3676 -1.5972 -2.7625 9 6 4.5556 -1.9364 -3.3483 10 6 5.7183 -1.5840 -2.7358 11 7 6.9517 -1.9181 -3.3118 12 16 7.8531 -3.1547 -2.6789 13 8 9.0030 -3.2766 -3.5048 14 8 7.9232 -2.9243 -1.2784 15 6 6.9269 -4.6382 -2.8934 16 1 5.9945 -4.6186 -3.4378 17 6 7.3927 -5.8240 -2.3661 18 7 8.5280 -5.8477 -1.7027 19 14 6.4105 -7.3966 -2.5929 20 1 6.8393 -8.0721 -3.8439 21 1 6.6466 -8.2987 -1.4372 22 1 4.9645 -7.0692 -2.6779 23 6 5.6695 -0.8803 -1.5178 24 7 4.5139 -0.5685 -0.9813 25 6 3.3637 -0.9058 -1.5791 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6766 -1.7490 1.2493 33 1 3.1299 -0.7216 1.2491 34 1 1.6766 -0.2075 2.1393 35 1 0.1705 -1.2922 -2.2407 36 1 4.5707 -2.4762 -4.2836 37 1 7.2772 -1.4251 -4.0811 38 1 8.8559 -6.6821 -1.3321 39 1 6.5866 -0.5955 -1.0236 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:14 Heat of formation + Delta-G solvation = 17.448166 kcal Electronic energy + Delta-G solvation = -25648.644841 eV Core-core repulsion = 21912.667723 eV Total energy + Delta-G solvation = -3735.977119 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -42.24131 -38.55758 -36.67401 -35.47693 -34.92272 -34.22488 -33.26779 -32.83343 -29.57662 -27.97466 -27.17732 -27.06663 -26.30382 -24.62348 -22.98591 -21.75118 -19.35079 -19.22781 -18.15370 -17.93159 -17.29631 -16.64351 -16.22106 -15.76239 -15.20829 -14.98389 -14.66200 -14.15500 -14.01390 -13.99989 -13.72916 -13.29425 -13.02663 -12.38751 -12.23627 -12.20646 -12.16559 -11.80989 -11.57211 -11.49856 -11.31483 -11.28785 -10.96274 -10.76979 -10.70706 -10.62523 -10.59076 -10.52065 -10.44181 -10.26367 -9.44529 -9.37576 -9.19653 -8.84496 -7.58854 -6.85313 -5.49774 0.66912 0.95131 1.89455 2.24547 2.67869 2.98944 3.06344 3.12460 3.52895 3.90073 4.03074 4.13379 4.36755 4.50616 4.61001 4.85454 4.97194 5.09155 5.12374 5.30129 5.46695 5.52485 5.58172 5.61486 5.72181 5.74579 5.85606 5.93607 6.06739 6.07692 6.11792 6.17275 6.25672 6.34695 6.46217 6.50143 6.54457 6.67134 7.16769 7.44333 7.54547 7.76780 7.77809 8.73772 10.09156 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016676 B = 0.004147 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.637796 B = 6750.696934 C = 7320.668734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.023 3.977 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.224 4.224 6 C 0.088 3.912 7 N -0.317 5.317 8 N -0.302 5.302 9 C 0.156 3.844 10 C 0.070 3.930 11 N -1.068 6.068 12 S 2.702 3.298 13 O -0.994 6.994 14 O -0.988 6.988 15 C -1.020 5.020 16 H 0.101 0.899 17 C 0.136 3.864 18 N -0.840 5.840 19 Si 0.920 3.080 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.263 1.263 23 C 0.198 3.802 24 N -0.454 5.454 25 C 0.263 3.737 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.192 0.808 36 H 0.183 0.817 37 H 0.415 0.585 38 H 0.293 0.707 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.805 10.655 0.457 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.022 3.978 3 C -0.195 4.195 4 C -0.198 4.198 5 C -0.238 4.238 6 C -0.090 4.090 7 N -0.141 5.141 8 N -0.073 5.073 9 C 0.017 3.983 10 C -0.032 4.032 11 N -0.819 5.819 12 S 2.803 3.197 13 O -0.984 6.984 14 O -0.978 6.978 15 C -1.153 5.153 16 H 0.119 0.881 17 C -0.083 4.083 18 N -0.469 5.469 19 Si 0.743 3.257 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.187 1.187 23 C 0.011 3.989 24 N -0.165 5.165 25 C 0.035 3.965 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.209 0.791 36 H 0.200 0.800 37 H 0.250 0.750 38 H 0.104 0.896 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.151 10.393 0.765 16.008 hybrid contribution -0.701 -1.199 -0.841 1.624 sum -12.853 9.194 -0.076 15.803 Atomic orbital electron populations 1.21899 0.94518 1.01736 1.01681 1.18665 0.94335 0.94097 0.90720 1.21874 1.02211 0.94692 1.00747 1.21893 1.02411 0.99650 0.95804 1.19425 0.87791 1.14426 1.02114 1.23645 1.00103 0.94297 0.90921 1.77892 0.82850 1.28899 1.24484 1.46994 1.06099 1.36820 1.17371 1.22411 0.80798 0.95456 0.99595 1.17406 0.85953 1.03568 0.96312 1.54026 1.28225 1.53597 1.46050 1.01082 0.72836 0.72993 0.72772 1.93415 1.48507 1.86444 1.70045 1.93387 1.86441 1.85751 1.32176 1.30384 1.22883 1.12790 1.49282 0.88064 1.24705 0.93690 1.00278 0.89656 1.69874 1.18007 1.30665 1.28382 0.86161 0.80547 0.80043 0.78919 1.18947 1.19757 1.18700 1.24048 0.96460 0.87849 0.90555 1.68251 0.95947 1.21877 1.30380 1.20536 0.94707 0.95720 0.85564 0.92508 0.92600 0.92405 0.92920 0.91603 0.93301 0.93101 0.91459 0.92923 0.79106 0.80007 0.74963 0.89629 0.79536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.39 37.16 0.27 -0.97 16 2 C 0.02 0.27 0.94 -155.66 -0.15 0.12 16 3 C -0.14 -1.52 8.36 37.15 0.31 -1.21 16 4 C -0.14 -1.70 8.37 37.16 0.31 -1.39 16 5 C -0.22 -3.17 4.79 -104.21 -0.50 -3.66 16 6 C 0.09 1.16 10.90 -17.57 -0.19 0.97 16 7 N -0.32 -5.05 12.66 30.47 0.39 -4.67 16 8 N -0.30 -5.07 3.90 -12.02 -0.05 -5.11 16 9 C 0.16 2.49 11.23 -16.15 -0.18 2.31 16 10 C 0.07 1.17 5.78 -83.88 -0.49 0.68 16 11 N -1.07 -18.44 5.73 32.34 0.19 -18.26 16 12 S 2.70 65.30 5.02 -107.50 -0.54 64.76 16 13 O -0.99 -26.66 18.02 -57.17 -1.03 -27.69 16 14 O -0.99 -26.22 17.04 -57.17 -0.97 -27.20 16 15 C -1.02 -26.44 9.67 30.60 0.30 -26.14 16 16 H 0.10 2.40 7.81 -52.49 -0.41 1.99 16 17 C 0.14 3.64 5.46 -17.82 -0.10 3.54 16 18 N -0.84 -23.64 13.10 55.43 0.73 -22.92 16 19 Si 0.92 20.13 29.54 -169.99 -5.02 15.11 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 23 C 0.20 3.26 10.57 -16.88 -0.18 3.08 16 24 N -0.45 -7.51 9.48 -12.08 -0.11 -7.63 16 25 C 0.26 4.34 7.38 -155.59 -1.15 3.19 16 26 H 0.06 0.48 7.96 -51.93 -0.41 0.07 16 27 H 0.05 0.45 7.95 -51.93 -0.41 0.03 16 28 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.83 7.54 -51.93 -0.39 0.44 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.07 0.95 7.54 -51.93 -0.39 0.56 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.19 1.78 7.34 -52.49 -0.39 1.40 16 36 H 0.18 2.48 8.06 -52.49 -0.42 2.06 16 37 H 0.41 5.68 8.96 -34.47 -0.31 5.37 16 38 H 0.29 7.43 8.31 -40.82 -0.34 7.10 16 39 H 0.19 2.81 7.99 -52.49 -0.42 2.39 16 LS Contribution 346.81 15.07 5.23 5.23 Total: -1.00 -33.98 346.81 -7.74 -41.73 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.80 Total: 6.13 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -1.74 Total: -19.49 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 1.14 Total: -58.58 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -2.00 Total: -54.88 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 65.30 SS G_CDS: -0.54 Total: 64.76 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.98 -7.74 -41.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.173 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds