Wall clock time and date at job start Tue Mar 31 2020 14:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47568 * 2 1 4 4 C 1.53003 * 109.46960 * 119.99874 * 2 1 3 5 5 C 1.50697 * 109.46912 * 239.99734 * 2 1 3 6 6 C 1.38577 * 126.17711 * 0.02582 * 5 2 1 7 7 N 1.31486 * 108.98024 * 180.02562 * 6 5 2 8 8 N 1.39942 * 108.83652 * 0.02562 * 7 6 5 9 9 C 1.36725 * 132.49611 * 180.02562 * 8 7 6 10 10 C 1.36065 * 119.03732 * 179.97438 * 9 8 7 11 11 N 1.40161 * 120.34846 * 179.97438 * 10 9 8 12 12 S 1.65596 * 119.99963 * 255.17827 * 11 10 9 13 13 O 1.42099 * 106.40413 * 177.75722 * 12 11 10 14 14 O 1.42105 * 106.40379 * 310.67363 * 12 11 10 15 15 C 1.76199 * 107.22026 * 64.21521 * 12 11 10 16 16 H 1.07993 * 119.99914 * 4.86666 * 15 12 11 17 17 C 1.37880 * 119.99727 * 184.86540 * 15 12 11 18 18 N 1.31512 * 120.00337 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99676 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47317 * 89.99838 * 19 17 15 21 21 H 1.48504 * 109.47110 * 210.00049 * 19 17 15 22 22 H 1.48499 * 109.47476 * 330.00130 * 19 17 15 23 23 C 1.40755 * 119.29958 * 359.97438 * 10 9 8 24 24 N 1.31167 * 120.22070 * 359.97438 * 23 10 9 25 25 C 1.33936 * 120.94170 * 359.74282 * 24 23 10 26 26 H 1.08998 * 109.47552 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46884 * 59.99799 * 1 2 3 28 28 H 1.09008 * 109.47032 * 300.00259 * 1 2 3 29 29 H 1.09000 * 109.47282 * 60.00070 * 3 2 1 30 30 H 1.09000 * 109.47368 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47182 * 300.00019 * 3 2 1 32 32 H 1.09009 * 109.47151 * 60.00052 * 4 2 1 33 33 H 1.08996 * 109.46989 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47509 * 300.00033 * 4 2 1 35 35 H 1.07994 * 125.50698 * 0.02562 * 6 5 2 36 36 H 1.08001 * 120.47631 * 359.97438 * 9 8 7 37 37 H 0.97003 * 119.99849 * 75.17417 * 11 10 9 38 38 H 0.97003 * 120.00043 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.89094 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0323 -0.7105 -1.2304 6 6 1.2503 -1.2821 -2.2214 7 7 2.0354 -1.8101 -3.1344 8 7 3.3676 -1.5972 -2.7625 9 6 4.5556 -1.9364 -3.3483 10 6 5.7183 -1.5840 -2.7358 11 7 6.9517 -1.9181 -3.3118 12 16 7.8531 -3.1547 -2.6789 13 8 9.0030 -3.2766 -3.5048 14 8 7.9232 -2.9243 -1.2784 15 6 6.9269 -4.6382 -2.8934 16 1 5.9945 -4.6186 -3.4378 17 6 7.3927 -5.8240 -2.3661 18 7 8.5280 -5.8477 -1.7027 19 14 6.4105 -7.3966 -2.5929 20 1 6.8393 -8.0721 -3.8439 21 1 6.6466 -8.2987 -1.4372 22 1 4.9645 -7.0692 -2.6779 23 6 5.6695 -0.8803 -1.5178 24 7 4.5139 -0.5685 -0.9813 25 6 3.3637 -0.9058 -1.5791 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6766 -1.7490 1.2493 33 1 3.1299 -0.7216 1.2491 34 1 1.6766 -0.2075 2.1393 35 1 0.1705 -1.2922 -2.2407 36 1 4.5707 -2.4762 -4.2836 37 1 7.2772 -1.4251 -4.0811 38 1 8.8559 -6.6821 -1.3321 39 1 6.5866 -0.5955 -1.0236 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:13 Heat of formation + Delta-G solvation = -7.123596 kcal Electronic energy + Delta-G solvation = -25649.710353 eV Core-core repulsion = 21912.667723 eV Total energy + Delta-G solvation = -3737.042630 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.42869 -39.76448 -37.67853 -37.46791 -36.30595 -36.24126 -35.23226 -34.06859 -30.80435 -29.15523 -28.31864 -27.99282 -27.98103 -25.87056 -24.19700 -22.85080 -21.21752 -20.31952 -19.70899 -19.22727 -18.75190 -18.41015 -17.62768 -17.10906 -16.89129 -16.20178 -16.00803 -15.77658 -15.53094 -14.98863 -14.84236 -14.53368 -14.10842 -14.04677 -13.67693 -13.42319 -13.23085 -13.09408 -13.06741 -12.91474 -12.70124 -12.60200 -12.50996 -12.42026 -12.38770 -12.11113 -11.88820 -11.64843 -11.60270 -11.46722 -11.29666 -10.99938 -10.69049 -10.32457 -8.83755 -8.75041 -7.54696 -0.58464 -0.35809 0.20479 0.97217 1.29230 1.30606 1.44599 1.57653 2.13799 2.28462 2.52985 2.63331 2.87191 3.12522 3.31345 3.56911 3.89296 3.96464 4.00348 4.13732 4.25872 4.35451 4.44715 4.54778 4.66119 4.73666 4.89879 4.91705 4.96549 5.03545 5.14599 5.17923 5.20395 5.27804 5.30827 5.39005 5.55537 5.56724 5.68414 5.81166 6.11039 6.37153 6.53192 6.73344 8.14568 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016676 B = 0.004147 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.637796 B = 6750.696934 C = 7320.668734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.020 3.980 3 C -0.134 4.134 4 C -0.139 4.139 5 C -0.219 4.219 6 C 0.098 3.902 7 N -0.334 5.334 8 N -0.317 5.317 9 C 0.162 3.838 10 C 0.052 3.948 11 N -1.046 6.046 12 S 2.717 3.283 13 O -1.028 7.028 14 O -1.019 7.019 15 C -1.041 5.041 16 H 0.118 0.882 17 C 0.078 3.922 18 N -0.886 5.886 19 Si 0.981 3.019 20 H -0.250 1.250 21 H -0.263 1.263 22 H -0.257 1.257 23 C 0.185 3.815 24 N -0.458 5.458 25 C 0.233 3.767 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.234 0.766 36 H 0.203 0.797 37 H 0.432 0.568 38 H 0.300 0.700 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.020 10.694 0.164 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.019 3.981 3 C -0.192 4.192 4 C -0.196 4.196 5 C -0.232 4.232 6 C -0.079 4.079 7 N -0.158 5.158 8 N -0.088 5.088 9 C 0.024 3.976 10 C -0.051 4.051 11 N -0.802 5.802 12 S 2.819 3.181 13 O -1.018 7.018 14 O -1.009 7.009 15 C -1.174 5.174 16 H 0.136 0.864 17 C -0.136 4.136 18 N -0.516 5.516 19 Si 0.799 3.201 20 H -0.174 1.174 21 H -0.187 1.187 22 H -0.180 1.180 23 C -0.002 4.002 24 N -0.169 5.169 25 C 0.006 3.994 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.250 0.750 36 H 0.220 0.780 37 H 0.271 0.729 38 H 0.110 0.890 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -15.354 10.455 0.464 18.581 hybrid contribution 0.150 -1.084 -0.727 1.313 sum -15.204 9.371 -0.263 17.862 Atomic orbital electron populations 1.21883 0.91801 1.02631 1.03130 1.18819 0.96458 0.93767 0.89069 1.21836 1.00784 0.94683 1.01880 1.21875 1.00684 0.99801 0.97241 1.19969 0.86999 1.13355 1.02840 1.24352 1.01681 0.92380 0.89489 1.77866 0.82719 1.29608 1.25622 1.47146 1.06441 1.37546 1.17669 1.22636 0.80616 0.94441 0.99928 1.17357 0.85633 1.05135 0.96926 1.53105 1.28351 1.52234 1.46484 1.00313 0.72553 0.73308 0.71965 1.93360 1.50629 1.87295 1.70541 1.93341 1.87020 1.86370 1.34169 1.30817 1.23619 1.13798 1.49166 0.86414 1.25826 0.94599 1.04087 0.89101 1.69956 1.19829 1.32026 1.29834 0.85255 0.79083 0.75982 0.79733 1.17419 1.18698 1.18035 1.24153 0.96860 0.88391 0.90802 1.68254 0.96118 1.22012 1.30508 1.21014 0.95519 0.96733 0.86115 0.91880 0.91301 0.90940 0.91031 0.93853 0.92899 0.93654 0.94148 0.90842 0.75024 0.77990 0.72860 0.88956 0.79134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.39 71.98 0.53 -1.35 16 2 C 0.02 0.42 0.94 -52.93 -0.05 0.37 16 3 C -0.13 -2.72 8.36 71.98 0.60 -2.11 16 4 C -0.14 -3.17 8.37 71.98 0.60 -2.57 16 5 C -0.22 -5.76 4.79 -19.60 -0.09 -5.86 16 6 C 0.10 2.32 10.90 84.83 0.92 3.25 16 7 N -0.33 -9.96 12.66 -57.52 -0.73 -10.69 16 8 N -0.32 -10.32 3.90 -191.94 -0.75 -11.06 16 9 C 0.16 5.08 11.23 83.42 0.94 6.02 16 10 C 0.05 1.73 5.78 37.92 0.22 1.95 16 11 N -1.05 -36.32 5.73 -51.60 -0.30 -36.62 16 12 S 2.72 133.84 5.02 -56.49 -0.28 133.56 16 13 O -1.03 -56.43 18.02 -128.00 -2.31 -58.73 16 14 O -1.02 -55.78 17.04 -128.00 -2.18 -57.96 16 15 C -1.04 -54.06 9.67 67.73 0.65 -53.41 16 16 H 0.12 5.49 7.81 -2.91 -0.02 5.47 16 17 C 0.08 4.18 5.46 84.66 0.46 4.64 16 18 N -0.89 -50.69 13.10 21.45 0.28 -50.41 16 19 Si 0.98 40.47 29.54 68.60 2.03 42.50 16 20 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 C 0.19 6.26 10.57 85.41 0.90 7.17 16 24 N -0.46 -15.41 9.48 -192.14 -1.82 -17.23 16 25 C 0.23 7.55 7.38 133.22 0.98 8.54 16 26 H 0.06 0.81 7.96 -2.39 -0.02 0.79 16 27 H 0.07 0.79 7.95 -2.39 -0.02 0.77 16 28 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.04 1.07 7.54 -2.39 -0.02 1.05 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.04 1.13 7.54 -2.39 -0.02 1.11 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.23 3.27 7.34 -2.91 -0.02 3.25 16 36 H 0.20 5.25 8.06 -2.91 -0.02 5.23 16 37 H 0.43 11.78 8.96 -96.74 -0.87 10.91 16 38 H 0.30 15.49 8.31 -92.71 -0.77 14.72 16 39 H 0.19 6.04 7.99 -2.91 -0.02 6.02 16 Total: -1.00 -74.32 346.81 0.84 -73.48 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.22 Total: 26.54 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 6.68 Total: -33.37 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -3.31 Total: -126.02 kcal Atomic # 8 Polarization: -112.21 SS G_CDS: -4.49 Total: -116.70 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 16 Polarization: 133.84 SS G_CDS: -0.28 Total: 133.56 kcal Total: -74.32 0.84 -73.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.360 kcal (2) G-P(sol) polarization free energy of solvation -74.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds