Wall clock time and date at job start Tue Mar 31 2020 14:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47228 * 2 1 4 4 C 1.52993 * 109.47421 * 239.99788 * 2 1 3 5 5 C 1.50707 * 109.47063 * 119.99770 * 2 1 3 6 6 N 1.32462 * 125.18745 * 239.96416 * 5 2 1 7 7 C 1.32954 * 109.67197 * 179.74423 * 6 5 2 8 8 C 1.40666 * 132.77074 * 179.51472 * 7 6 5 9 9 C 1.36102 * 119.38094 * 180.47694 * 8 7 6 10 10 C 1.40750 * 119.59290 * 0.28277 * 9 8 7 11 11 N 1.40069 * 119.97660 * 179.97438 * 10 9 8 12 12 S 1.65598 * 119.99667 * 44.99600 * 11 10 9 13 13 O 1.42097 * 106.40049 * 178.54147 * 12 11 10 14 14 O 1.42100 * 106.40327 * 311.46145 * 12 11 10 15 15 C 1.76200 * 107.22091 * 65.00411 * 12 11 10 16 16 H 1.08002 * 119.99568 * 359.97438 * 15 12 11 17 17 C 1.37870 * 120.00160 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00078 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00114 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47541 * 59.99518 * 19 17 15 21 21 H 1.48506 * 109.47340 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46962 * 299.99649 * 19 17 15 23 23 C 1.35788 * 120.05401 * 359.97036 * 10 9 8 24 24 N 1.36107 * 120.47235 * 0.04814 * 23 10 9 25 25 N 1.31299 * 125.18659 * 60.00033 * 5 2 1 26 26 H 1.08997 * 109.47180 * 300.00076 * 1 2 3 27 27 H 1.09005 * 109.46487 * 60.00050 * 1 2 3 28 28 H 1.08994 * 109.47172 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47276 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46843 * 299.99978 * 3 2 1 31 31 H 1.08997 * 109.47102 * 59.99877 * 3 2 1 32 32 H 1.09004 * 109.47297 * 300.00450 * 4 2 1 33 33 H 1.09005 * 109.47418 * 60.00089 * 4 2 1 34 34 H 1.08998 * 109.47278 * 180.02562 * 4 2 1 35 35 H 1.08002 * 120.31125 * 0.75908 * 8 7 6 36 36 H 1.08004 * 120.20096 * 180.29887 * 9 8 7 37 37 H 0.97000 * 119.99715 * 224.99838 * 11 10 9 38 38 H 0.97003 * 120.00183 * 179.97438 * 18 17 15 39 39 H 1.08005 * 119.76397 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 2.0323 -0.7104 1.2305 6 7 2.7977 -0.1682 2.1660 7 6 3.0523 -1.0668 3.1122 8 6 3.8052 -1.0166 4.2994 9 6 3.8928 -2.1267 5.0819 10 6 3.2350 -3.3075 4.6894 11 7 3.3202 -4.4548 5.4884 12 16 3.1257 -4.3377 7.1287 13 8 3.2326 -5.6588 7.6408 14 8 3.9586 -3.2687 7.5562 15 6 1.4662 -3.8233 7.4218 16 1 0.7997 -3.6499 6.5898 17 6 1.0188 -3.6411 8.7131 18 7 1.8305 -3.8518 9.7262 19 14 -0.7408 -3.0965 9.0239 20 1 -1.6771 -4.1006 8.4581 21 1 -0.9705 -2.9748 10.4860 22 1 -0.9739 -1.7814 8.3746 23 6 2.5178 -3.3354 3.5367 24 7 2.4288 -2.2268 2.7521 25 7 1.7787 -1.9613 1.5386 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6768 -0.2075 -2.1392 34 1 3.1300 -0.7216 -1.2489 35 1 4.3053 -0.1044 4.5895 36 1 4.4634 -2.1016 5.9986 37 1 3.4932 -5.3179 5.0808 38 1 1.5159 -3.7232 10.6347 39 1 2.0145 -4.2439 3.2402 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:18 Heat of formation + Delta-G solvation = 17.841881 kcal Electronic energy + Delta-G solvation = -25205.849877 eV Core-core repulsion = 21469.889830 eV Total energy + Delta-G solvation = -3735.960046 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.52599 -38.73377 -36.69845 -35.54139 -34.32271 -33.90703 -33.31696 -33.21860 -30.06460 -28.39505 -27.42711 -27.23249 -26.31693 -23.93698 -23.19198 -22.23609 -19.43448 -19.19516 -18.33879 -17.51943 -17.08050 -16.58372 -16.15334 -15.97015 -15.25276 -15.07002 -14.56764 -14.22337 -14.15401 -14.00646 -13.86854 -13.42753 -12.79418 -12.62198 -12.21694 -12.19221 -12.07088 -11.77079 -11.56626 -11.49675 -11.35964 -11.30652 -11.17618 -11.04697 -11.00116 -10.82602 -10.72291 -10.62569 -10.41427 -10.15503 -9.88384 -9.38395 -9.13841 -8.78797 -7.85234 -6.87491 -5.52158 0.82794 1.09953 1.80767 2.31505 2.79177 3.00557 3.05389 3.10973 3.54406 3.88180 3.91296 4.18325 4.22542 4.48795 4.71550 4.76341 4.82584 4.85244 5.08669 5.28598 5.35490 5.46719 5.46768 5.52319 5.65876 5.71383 5.78768 5.80011 5.88265 5.97129 6.07285 6.14195 6.14947 6.28367 6.40629 6.45291 6.52783 6.59994 6.92727 7.15615 7.41835 7.77030 8.14114 8.71790 10.06869 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.003598 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.826899 B = 7780.306771 C = 8503.608035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.027 3.973 3 C -0.130 4.130 4 C -0.138 4.138 5 C 0.260 3.740 6 N -0.544 5.544 7 C 0.271 3.729 8 C -0.094 4.094 9 C -0.075 4.075 10 C 0.156 3.844 11 N -1.064 6.064 12 S 2.704 3.296 13 O -0.989 6.989 14 O -0.991 6.991 15 C -1.017 5.017 16 H 0.103 0.897 17 C 0.136 3.864 18 N -0.842 5.842 19 Si 0.921 3.079 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.263 1.263 23 C 0.067 3.933 24 N -0.269 5.269 25 N -0.343 5.343 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.162 0.838 36 H 0.188 0.812 37 H 0.417 0.583 38 H 0.294 0.706 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 5.791 -15.855 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.024 3.976 3 C -0.187 4.187 4 C -0.196 4.196 5 C -0.021 4.021 6 N -0.274 5.274 7 C 0.018 3.982 8 C -0.116 4.116 9 C -0.103 4.103 10 C 0.054 3.946 11 N -0.808 5.808 12 S 2.805 3.195 13 O -0.979 6.979 14 O -0.981 6.981 15 C -1.151 5.151 16 H 0.121 0.879 17 C -0.083 4.083 18 N -0.471 5.471 19 Si 0.745 3.255 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.187 1.187 23 C -0.066 4.066 24 N -0.042 5.042 25 N -0.176 5.176 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.180 0.820 36 H 0.205 0.795 37 H 0.251 0.749 38 H 0.105 0.895 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.630 5.622 -15.450 16.453 hybrid contribution -1.413 -0.280 0.167 1.450 sum -0.783 5.341 -15.282 16.208 Atomic orbital electron populations 1.21880 0.92696 1.02826 1.02291 1.18987 0.95849 0.94878 0.87907 1.21717 1.01911 0.93207 1.01914 1.21870 1.01333 1.00726 0.95636 1.24161 0.93162 0.88794 0.95957 1.70741 1.23074 1.29838 1.03768 1.21840 0.96403 0.83234 0.96735 1.20204 1.00076 1.00639 0.90647 1.22314 0.96253 0.90615 1.01084 1.16637 0.97062 0.89006 0.91900 1.54182 1.86288 1.12009 1.28356 1.01026 0.76876 0.73530 0.68018 1.93416 1.89282 1.40563 1.74666 1.93303 1.70279 1.56830 1.77704 1.30339 1.21376 1.63388 1.00015 0.87851 1.24708 1.00163 0.89416 0.94011 1.69859 1.37028 1.39214 1.01003 0.86171 0.81235 0.80106 0.78009 1.18735 1.19870 1.18733 1.21195 1.01611 0.90992 0.92836 1.47309 1.31868 1.09629 1.15417 1.78411 1.24286 1.17935 0.96918 0.92318 0.91480 0.91791 0.91833 0.92214 0.91771 0.91832 0.91482 0.92438 0.82049 0.79540 0.74912 0.89519 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.46 37.16 0.31 -1.11 16 2 C 0.03 0.31 0.99 -155.66 -0.15 0.15 16 3 C -0.13 -1.32 7.92 37.16 0.29 -1.03 16 4 C -0.14 -1.34 8.45 37.15 0.31 -1.03 16 5 C 0.26 4.03 6.31 -157.04 -0.99 3.04 16 6 N -0.54 -9.12 10.50 -10.15 -0.11 -9.23 16 7 C 0.27 4.60 7.88 -156.32 -1.23 3.36 16 8 C -0.09 -1.43 10.10 -39.43 -0.40 -1.83 16 9 C -0.08 -1.25 9.18 -39.40 -0.36 -1.61 16 10 C 0.16 2.60 6.18 -84.02 -0.52 2.08 16 11 N -1.06 -18.48 5.77 32.27 0.19 -18.30 16 12 S 2.70 64.19 4.95 -107.50 -0.53 63.66 16 13 O -0.99 -26.36 18.02 -57.17 -1.03 -27.39 16 14 O -0.99 -24.96 14.94 -57.17 -0.85 -25.82 16 15 C -1.02 -26.11 9.68 30.60 0.30 -25.81 16 16 H 0.10 2.47 7.81 -52.49 -0.41 2.06 16 17 C 0.14 3.59 5.46 -17.82 -0.10 3.49 16 18 N -0.84 -23.25 13.19 55.43 0.73 -22.52 16 19 Si 0.92 19.86 29.54 -169.99 -5.02 14.84 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 23 C 0.07 1.04 11.11 -16.53 -0.18 0.86 16 24 N -0.27 -4.57 3.90 -12.16 -0.05 -4.61 16 25 N -0.34 -5.75 12.78 32.38 0.41 -5.33 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.19 3.26 5.63 -52.48 -0.30 2.97 16 37 H 0.42 5.79 8.96 -34.47 -0.31 5.49 16 38 H 0.29 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.17 2.22 8.06 -52.48 -0.42 1.79 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -33.32 346.73 -8.55 -41.87 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.80 Total: 7.06 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.72 Total: -19.44 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 1.18 Total: -60.00 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -1.88 Total: -53.21 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 64.19 SS G_CDS: -0.53 Total: 63.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.32 -8.55 -41.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.712 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds