Wall clock time and date at job start Tue Mar 31 2020 14:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47228 * 2 1 4 4 C 1.52993 * 109.47421 * 239.99788 * 2 1 3 5 5 C 1.50707 * 109.47063 * 119.99770 * 2 1 3 6 6 N 1.32462 * 125.18745 * 239.96416 * 5 2 1 7 7 C 1.32954 * 109.67197 * 179.74423 * 6 5 2 8 8 C 1.40666 * 132.77074 * 179.51472 * 7 6 5 9 9 C 1.36102 * 119.38094 * 180.47694 * 8 7 6 10 10 C 1.40750 * 119.59290 * 0.28277 * 9 8 7 11 11 N 1.40069 * 119.97660 * 179.97438 * 10 9 8 12 12 S 1.65598 * 119.99667 * 44.99600 * 11 10 9 13 13 O 1.42097 * 106.40049 * 178.54147 * 12 11 10 14 14 O 1.42100 * 106.40327 * 311.46145 * 12 11 10 15 15 C 1.76200 * 107.22091 * 65.00411 * 12 11 10 16 16 H 1.08002 * 119.99568 * 359.97438 * 15 12 11 17 17 C 1.37870 * 120.00160 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00078 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00114 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47541 * 59.99518 * 19 17 15 21 21 H 1.48506 * 109.47340 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46962 * 299.99649 * 19 17 15 23 23 C 1.35788 * 120.05401 * 359.97036 * 10 9 8 24 24 N 1.36107 * 120.47235 * 0.04814 * 23 10 9 25 25 N 1.31299 * 125.18659 * 60.00033 * 5 2 1 26 26 H 1.08997 * 109.47180 * 300.00076 * 1 2 3 27 27 H 1.09005 * 109.46487 * 60.00050 * 1 2 3 28 28 H 1.08994 * 109.47172 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47276 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46843 * 299.99978 * 3 2 1 31 31 H 1.08997 * 109.47102 * 59.99877 * 3 2 1 32 32 H 1.09004 * 109.47297 * 300.00450 * 4 2 1 33 33 H 1.09005 * 109.47418 * 60.00089 * 4 2 1 34 34 H 1.08998 * 109.47278 * 180.02562 * 4 2 1 35 35 H 1.08002 * 120.31125 * 0.75908 * 8 7 6 36 36 H 1.08004 * 120.20096 * 180.29887 * 9 8 7 37 37 H 0.97000 * 119.99715 * 224.99838 * 11 10 9 38 38 H 0.97003 * 120.00183 * 179.97438 * 18 17 15 39 39 H 1.08005 * 119.76397 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 2.0323 -0.7104 1.2305 6 7 2.7977 -0.1682 2.1660 7 6 3.0523 -1.0668 3.1122 8 6 3.8052 -1.0166 4.2994 9 6 3.8928 -2.1267 5.0819 10 6 3.2350 -3.3075 4.6894 11 7 3.3202 -4.4548 5.4884 12 16 3.1257 -4.3377 7.1287 13 8 3.2326 -5.6588 7.6408 14 8 3.9586 -3.2687 7.5562 15 6 1.4662 -3.8233 7.4218 16 1 0.7997 -3.6499 6.5898 17 6 1.0188 -3.6411 8.7131 18 7 1.8305 -3.8518 9.7262 19 14 -0.7408 -3.0965 9.0239 20 1 -1.6771 -4.1006 8.4581 21 1 -0.9705 -2.9748 10.4860 22 1 -0.9739 -1.7814 8.3746 23 6 2.5178 -3.3354 3.5367 24 7 2.4288 -2.2268 2.7521 25 7 1.7787 -1.9613 1.5386 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6768 -0.2075 -2.1392 34 1 3.1300 -0.7216 -1.2489 35 1 4.3053 -0.1044 4.5895 36 1 4.4634 -2.1016 5.9986 37 1 3.4932 -5.3179 5.0808 38 1 1.5159 -3.7232 10.6347 39 1 2.0145 -4.2439 3.2402 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:18 Heat of formation + Delta-G solvation = -5.224711 kcal Electronic energy + Delta-G solvation = -25206.850119 eV Core-core repulsion = 21469.889830 eV Total energy + Delta-G solvation = -3736.960289 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.78234 -39.97605 -37.79993 -37.41991 -36.29141 -35.37678 -35.05790 -34.58546 -31.31469 -29.69488 -28.30585 -28.20008 -28.06212 -25.16651 -24.44942 -23.44261 -21.23716 -20.31199 -19.91935 -18.89117 -18.72807 -18.05339 -17.64733 -17.29910 -16.92148 -16.23769 -16.01969 -15.77535 -15.61403 -15.09884 -14.90507 -14.70320 -14.09352 -14.03557 -13.68574 -13.44400 -13.12893 -13.05655 -13.01221 -12.75286 -12.62735 -12.61367 -12.57266 -12.40086 -12.36960 -12.28327 -12.22751 -11.95123 -11.91756 -11.54371 -11.28032 -11.13206 -11.00026 -10.15616 -9.16491 -8.80230 -7.54210 -0.44413 -0.25887 0.12527 1.00168 1.32127 1.32921 1.45598 1.56913 2.15581 2.26840 2.53372 2.64804 2.76693 3.00608 3.48147 3.54044 3.66884 3.88424 3.93687 3.98923 4.16067 4.24982 4.37478 4.52296 4.75701 4.77595 4.86146 4.86372 4.95187 4.97764 5.00265 5.00809 5.14421 5.17771 5.24029 5.27728 5.35726 5.43671 5.46120 5.66515 5.82348 6.07487 6.74228 6.88611 8.14954 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.003598 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.826899 B = 7780.306771 C = 8503.608035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.020 3.980 3 C -0.124 4.124 4 C -0.132 4.132 5 C 0.257 3.743 6 N -0.556 5.556 7 C 0.256 3.744 8 C -0.084 4.084 9 C -0.088 4.088 10 C 0.140 3.860 11 N -1.047 6.047 12 S 2.721 3.279 13 O -1.025 7.025 14 O -1.013 7.013 15 C -1.040 5.040 16 H 0.115 0.885 17 C 0.081 3.919 18 N -0.885 5.885 19 Si 0.979 3.021 20 H -0.253 1.253 21 H -0.260 1.260 22 H -0.257 1.257 23 C 0.079 3.921 24 N -0.279 5.279 25 N -0.358 5.358 26 H 0.046 0.954 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.187 0.813 36 H 0.177 0.823 37 H 0.433 0.567 38 H 0.301 0.699 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.160 6.848 -17.905 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.018 3.982 3 C -0.182 4.182 4 C -0.190 4.190 5 C -0.023 4.023 6 N -0.286 5.286 7 C 0.003 3.997 8 C -0.105 4.105 9 C -0.115 4.115 10 C 0.039 3.961 11 N -0.797 5.797 12 S 2.822 3.178 13 O -1.015 7.015 14 O -1.003 7.003 15 C -1.173 5.173 16 H 0.133 0.867 17 C -0.133 4.133 18 N -0.515 5.515 19 Si 0.798 3.202 20 H -0.176 1.176 21 H -0.184 1.184 22 H -0.181 1.181 23 C -0.054 4.054 24 N -0.052 5.052 25 N -0.190 5.190 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.205 0.795 36 H 0.194 0.806 37 H 0.271 0.729 38 H 0.112 0.888 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -0.770 6.665 -17.513 18.754 hybrid contribution -0.931 -0.563 0.657 1.271 sum -1.701 6.102 -16.856 18.007 Atomic orbital electron populations 1.21869 0.91619 1.02499 1.03267 1.19325 0.96677 0.95358 0.86879 1.21693 1.01293 0.92436 1.02785 1.21850 1.00875 1.00404 0.95881 1.25050 0.92114 0.88527 0.96625 1.70776 1.23637 1.30084 1.04143 1.22185 0.96716 0.83559 0.97258 1.20431 0.99277 1.01118 0.89687 1.22251 0.96884 0.91288 1.01121 1.16644 0.98351 0.88648 0.92485 1.53367 1.86317 1.13366 1.26625 1.00236 0.76200 0.72333 0.69027 1.93364 1.89504 1.41996 1.76630 1.93278 1.70499 1.57281 1.79196 1.30765 1.22774 1.63106 1.00655 0.86722 1.25778 1.04489 0.89201 0.93865 1.69932 1.39166 1.40670 1.01771 0.85310 0.76117 0.79982 0.78814 1.17642 1.18390 1.18087 1.21438 1.00477 0.91529 0.91968 1.47480 1.32103 1.09910 1.15753 1.78392 1.24890 1.18786 0.96979 0.93520 0.88320 0.92756 0.92754 0.89103 0.93110 0.92725 0.88407 0.93131 0.79548 0.80626 0.72886 0.88836 0.78548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.46 71.98 0.61 -1.85 16 2 C 0.02 0.43 0.99 -52.93 -0.05 0.38 16 3 C -0.12 -2.26 7.92 71.98 0.57 -1.69 16 4 C -0.13 -2.25 8.45 71.98 0.61 -1.65 16 5 C 0.26 7.68 6.31 138.70 0.88 8.56 16 6 N -0.56 -18.16 10.50 -186.02 -1.95 -20.11 16 7 C 0.26 8.47 7.88 134.10 1.06 9.52 16 8 C -0.08 -2.49 10.10 22.37 0.23 -2.27 16 9 C -0.09 -2.90 9.18 22.39 0.21 -2.70 16 10 C 0.14 4.59 6.18 37.87 0.23 4.82 16 11 N -1.05 -36.04 5.77 -51.82 -0.30 -36.34 16 12 S 2.72 130.68 4.95 -56.49 -0.28 130.40 16 13 O -1.02 -55.60 18.02 -128.00 -2.31 -57.91 16 14 O -1.01 -52.07 14.94 -128.00 -1.91 -53.98 16 15 C -1.04 -53.36 9.68 67.73 0.66 -52.71 16 16 H 0.11 5.41 7.81 -2.91 -0.02 5.39 16 17 C 0.08 4.27 5.46 84.65 0.46 4.73 16 18 N -0.88 -49.46 13.19 21.44 0.28 -49.18 16 19 Si 0.98 39.83 29.54 68.60 2.03 41.85 16 20 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 C 0.08 2.36 11.11 83.46 0.93 3.29 16 24 N -0.28 -9.20 3.90 -192.37 -0.75 -9.95 16 25 N -0.36 -11.62 12.78 -51.46 -0.66 -12.28 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.19 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.18 6.26 5.63 -2.91 -0.02 6.24 16 37 H 0.43 11.76 8.96 -96.74 -0.87 10.89 16 38 H 0.30 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.20 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -72.11 346.73 0.75 -71.36 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.22 Total: 27.69 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 6.38 Total: -31.56 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -3.38 Total: -127.86 kcal Atomic # 8 Polarization: -107.66 SS G_CDS: -4.22 Total: -111.88 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.85 kcal Atomic # 16 Polarization: 130.68 SS G_CDS: -0.28 Total: 130.40 kcal Total: -72.11 0.75 -71.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.132 kcal (2) G-P(sol) polarization free energy of solvation -72.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds