Wall clock time and date at job start Tue Mar 31 2020 13:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38803 * 120.84991 * 2 1 4 4 N 1.32167 * 119.16646 * 180.02562 * 3 2 1 5 5 C 1.32033 * 121.01695 * 359.97438 * 4 3 2 6 6 Cl 1.73599 * 119.05897 * 180.02562 * 5 4 3 7 7 N 1.31684 * 121.88643 * 0.02562 * 5 4 3 8 8 C 1.33112 * 120.71643 * 359.66065 * 7 5 4 9 9 C 1.48450 * 120.53896 * 180.30738 * 8 7 5 10 10 O 1.21476 * 119.99982 * 255.94008 * 9 8 7 11 11 N 1.34778 * 120.00141 * 75.94214 * 9 8 7 12 12 C 1.47087 * 120.87892 * 4.78922 * 11 9 8 13 13 C 1.53692 * 108.27667 * 128.75538 * 12 11 9 14 14 N 1.46902 * 109.25832 * 54.07774 * 13 12 11 15 15 C 1.46896 * 110.99819 * 172.60670 * 14 13 12 16 16 C 1.50702 * 109.47473 * 294.30280 * 15 14 13 17 17 H 1.07998 * 119.99931 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00013 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00168 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99556 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47507 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47263 * 120.00267 * 20 18 16 23 23 H 1.48507 * 109.46775 * 239.99867 * 20 18 16 24 24 C 1.46898 * 111.27245 * 296.75751 * 14 13 12 25 25 C 1.47079 * 120.88293 * 185.06542 * 11 9 8 26 26 H 1.09003 * 109.46851 * 85.19225 * 1 2 3 27 27 H 1.08993 * 109.47681 * 325.18768 * 1 2 3 28 28 H 1.09004 * 109.46544 * 205.18380 * 1 2 3 29 29 H 1.08006 * 120.41750 * 0.02562 * 3 2 1 30 30 H 1.08994 * 109.62770 * 248.52455 * 12 11 9 31 31 H 1.09003 * 109.62367 * 9.10171 * 12 11 9 32 32 H 1.09003 * 109.64926 * 294.07708 * 13 12 11 33 33 H 1.09001 * 109.42447 * 173.95031 * 13 12 11 34 34 H 1.09007 * 109.47288 * 54.30801 * 15 14 13 35 35 H 1.09006 * 109.47133 * 174.30410 * 15 14 13 36 36 H 0.96998 * 119.99919 * 179.97438 * 19 18 16 37 37 H 1.08994 * 109.49143 * 303.14733 * 24 14 13 38 38 H 1.08998 * 109.49269 * 183.05960 * 24 14 13 39 39 H 1.08995 * 109.62730 * 350.89493 * 25 11 9 40 40 H 1.08997 * 109.62585 * 111.47697 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2188 1.1916 0.0000 4 7 3.5399 1.1528 -0.0005 5 6 4.1867 0.0018 -0.0005 6 17 5.9227 0.0101 -0.0005 7 7 3.5527 -1.1524 -0.0005 8 6 2.2224 -1.1974 0.0063 9 6 1.5117 -2.5007 0.0131 10 8 0.9915 -2.9142 -1.0038 11 7 1.4437 -3.2253 1.1475 12 6 1.9747 -2.6972 2.4135 13 6 0.8835 -2.8321 3.4874 14 7 0.4254 -4.2268 3.5402 15 6 -0.4900 -4.4378 4.6696 16 6 0.2577 -4.2490 5.9644 17 1 1.3078 -3.9970 5.9498 18 6 -0.3991 -4.3969 7.1676 19 7 -1.6779 -4.7032 7.1854 20 14 0.5276 -4.1621 8.7724 21 1 1.9440 -3.8243 8.4814 22 1 -0.0950 -3.0584 9.5467 23 1 0.4702 -5.4166 9.5652 24 6 -0.1994 -4.6309 2.2736 25 6 0.8420 -4.5674 1.1512 26 1 -0.3633 0.0861 -1.0241 27 1 -0.3634 0.8437 0.5866 28 1 -0.3632 -0.9300 0.4373 29 1 1.6996 2.1387 0.0004 30 1 2.8550 -3.2685 2.7079 31 1 2.2406 -1.6474 2.2894 32 1 0.0437 -2.1826 3.2402 33 1 1.2917 -2.5463 4.4568 34 1 -1.3075 -3.7189 4.6139 35 1 -0.8926 -5.4499 4.6268 36 1 -2.1398 -4.8076 8.0319 37 1 -1.0239 -3.9564 2.0433 38 1 -0.5763 -5.6498 2.3628 39 1 0.3587 -4.7545 0.1923 40 1 1.6156 -5.3149 1.3266 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193239895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:03 Heat of formation + Delta-G solvation = 23.667648 kcal Electronic energy + Delta-G solvation = -25271.076866 eV Core-core repulsion = 21533.325737 eV Total energy + Delta-G solvation = -3737.751128 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.79539 -39.88209 -37.71694 -37.23280 -34.71861 -34.28442 -34.08326 -32.48755 -30.96963 -28.67647 -27.97284 -26.44058 -25.18191 -23.49374 -23.32443 -22.27337 -21.10776 -19.57596 -18.57318 -17.96999 -16.87005 -16.46076 -15.89775 -15.66012 -15.12871 -15.02327 -14.82697 -14.54534 -14.41259 -13.97518 -13.84877 -13.71061 -13.64719 -13.02073 -12.72300 -12.45244 -12.05135 -11.99748 -11.79470 -11.57662 -11.43159 -11.38774 -11.16249 -11.10110 -10.88201 -10.74925 -10.62224 -10.48153 -9.96659 -9.68466 -9.55931 -9.34694 -8.71841 -8.53101 -7.44299 -6.12568 -4.14813 0.14944 0.38623 1.00296 2.21200 2.62916 3.06546 3.24721 3.32980 3.36808 3.60094 3.90928 4.08334 4.24080 4.33240 4.36347 4.64824 4.85405 5.09311 5.20497 5.21510 5.25992 5.31584 5.39081 5.46491 5.51723 5.63628 5.69752 5.76365 5.86766 6.15632 6.23074 6.31140 6.31996 6.45427 7.10888 7.16523 7.21475 7.29359 7.66776 7.81124 7.91688 8.02680 8.38683 8.92587 9.50311 10.98199 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.003337 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.017462 B = 8388.241932 C = 9222.916175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.152 4.152 3 C 0.171 3.829 4 N -0.495 5.495 5 C 0.356 3.644 6 Cl 0.032 6.968 7 N -0.475 5.475 8 C 0.166 3.834 9 C 0.578 3.422 10 O -0.524 6.524 11 N -0.588 5.588 12 C 0.114 3.886 13 C 0.052 3.948 14 N -0.535 5.535 15 C 0.194 3.806 16 C -0.511 4.511 17 H 0.064 0.936 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.283 1.283 24 C 0.041 3.959 25 C 0.118 3.882 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.187 0.813 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.100 0.900 34 H -0.008 1.008 35 H 0.033 0.967 36 H 0.262 0.738 37 H 0.029 0.971 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.903 10.941 -14.670 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.157 4.157 3 C 0.004 3.996 4 N -0.211 5.211 5 C 0.062 3.938 6 Cl 0.060 6.940 7 N -0.193 5.193 8 C 0.017 3.983 9 C 0.362 3.638 10 O -0.399 6.399 11 N -0.320 5.320 12 C -0.009 4.009 13 C -0.077 4.077 14 N -0.260 5.260 15 C 0.069 3.931 16 C -0.550 4.550 17 H 0.083 0.917 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.209 1.209 24 C -0.089 4.089 25 C -0.004 4.004 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.204 0.796 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.118 0.882 34 H 0.010 0.990 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.045 10.328 -15.002 19.911 hybrid contribution -0.860 0.661 0.908 1.415 sum 7.184 10.989 -14.093 19.261 Atomic orbital electron populations 1.20782 0.87700 1.04439 1.03937 1.21810 0.99982 0.93671 1.00255 1.23256 0.87837 0.98455 0.90072 1.67843 1.10402 1.29174 1.13635 1.22894 0.90295 0.84872 0.95712 1.98451 1.01255 1.98305 1.96035 1.67867 1.08763 1.29415 1.13219 1.21446 0.88714 0.94823 0.93319 1.17635 0.79736 0.82384 0.84020 1.90812 1.46914 1.69723 1.32496 1.48150 1.57933 1.17596 1.08276 1.22118 0.98204 0.98111 0.82494 1.22410 0.95885 0.90672 0.98736 1.62079 1.41773 1.19331 1.02832 1.19739 0.89851 0.96663 0.86813 1.21165 0.96494 1.47467 0.89840 0.91744 1.24984 0.94875 0.95263 0.99353 1.69958 1.08889 1.48360 1.26393 0.86453 0.79989 0.77767 0.83290 1.19613 1.21099 1.20929 1.22423 0.94507 1.01533 0.90403 1.21928 0.96847 0.81691 0.99926 0.89327 0.89636 0.90608 0.79569 0.89743 0.91477 0.95552 0.88198 0.99020 0.94864 0.92867 0.95316 0.89602 0.88933 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.76 36.01 0.35 -0.58 16 2 C -0.15 -1.58 5.95 -103.95 -0.62 -2.20 16 3 C 0.17 1.52 11.03 -17.20 -0.19 1.33 16 4 N -0.49 -5.60 10.39 -11.64 -0.12 -5.72 16 5 C 0.36 4.47 8.17 -92.04 -0.75 3.72 16 6 Cl 0.03 0.35 29.26 -51.86 -1.52 -1.17 16 7 N -0.47 -6.59 10.37 -8.23 -0.09 -6.68 16 8 C 0.17 2.22 4.56 -82.64 -0.38 1.84 16 9 C 0.58 8.68 5.90 -12.05 -0.07 8.61 16 10 O -0.52 -8.98 16.55 5.39 0.09 -8.89 16 11 N -0.59 -8.67 3.00 -173.07 -0.52 -9.19 16 12 C 0.11 1.65 6.51 -3.36 -0.02 1.63 16 13 C 0.05 0.91 5.47 -3.46 -0.02 0.89 16 14 N -0.53 -10.51 4.62 -235.46 -1.09 -11.60 16 15 C 0.19 4.72 4.72 -4.98 -0.02 4.69 16 16 C -0.51 -13.51 8.41 -34.44 -0.29 -13.80 16 17 H 0.06 1.68 7.13 -52.49 -0.37 1.30 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 20 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 25 C 0.12 1.71 6.61 -3.60 -0.02 1.68 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.08 0.80 7.00 -51.93 -0.36 0.43 16 29 H 0.19 0.87 8.06 -52.48 -0.42 0.45 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.07 0.89 6.45 -51.93 -0.33 0.56 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 1.87 6.67 -51.93 -0.35 1.52 16 34 H -0.01 -0.21 8.13 -51.93 -0.42 -0.63 16 35 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 1.37 7.99 -51.93 -0.41 0.95 16 39 H 0.09 1.29 7.04 -51.93 -0.37 0.92 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -31.07 350.09 -9.53 -40.60 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -5.13 Total: -3.40 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -2.15 Total: 9.91 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -1.08 Total: -58.07 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.52 Total: -1.17 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.07 -9.53 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193239895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.270 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds