Wall clock time and date at job start Tue Mar 31 2020 13:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38803 * 120.84991 * 2 1 4 4 N 1.32167 * 119.16646 * 180.02562 * 3 2 1 5 5 C 1.32033 * 121.01695 * 359.97438 * 4 3 2 6 6 Cl 1.73599 * 119.05897 * 180.02562 * 5 4 3 7 7 N 1.31684 * 121.88643 * 0.02562 * 5 4 3 8 8 C 1.33112 * 120.71643 * 359.66065 * 7 5 4 9 9 C 1.48450 * 120.53896 * 180.30738 * 8 7 5 10 10 O 1.21476 * 119.99982 * 255.94008 * 9 8 7 11 11 N 1.34778 * 120.00141 * 75.94214 * 9 8 7 12 12 C 1.47087 * 120.87892 * 4.78922 * 11 9 8 13 13 C 1.53692 * 108.27667 * 128.75538 * 12 11 9 14 14 N 1.46902 * 109.25832 * 54.07774 * 13 12 11 15 15 C 1.46896 * 110.99819 * 172.60670 * 14 13 12 16 16 C 1.50702 * 109.47473 * 294.30280 * 15 14 13 17 17 H 1.07998 * 119.99931 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00013 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00168 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99556 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47507 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47263 * 120.00267 * 20 18 16 23 23 H 1.48507 * 109.46775 * 239.99867 * 20 18 16 24 24 C 1.46898 * 111.27245 * 296.75751 * 14 13 12 25 25 C 1.47079 * 120.88293 * 185.06542 * 11 9 8 26 26 H 1.09003 * 109.46851 * 85.19225 * 1 2 3 27 27 H 1.08993 * 109.47681 * 325.18768 * 1 2 3 28 28 H 1.09004 * 109.46544 * 205.18380 * 1 2 3 29 29 H 1.08006 * 120.41750 * 0.02562 * 3 2 1 30 30 H 1.08994 * 109.62770 * 248.52455 * 12 11 9 31 31 H 1.09003 * 109.62367 * 9.10171 * 12 11 9 32 32 H 1.09003 * 109.64926 * 294.07708 * 13 12 11 33 33 H 1.09001 * 109.42447 * 173.95031 * 13 12 11 34 34 H 1.09007 * 109.47288 * 54.30801 * 15 14 13 35 35 H 1.09006 * 109.47133 * 174.30410 * 15 14 13 36 36 H 0.96998 * 119.99919 * 179.97438 * 19 18 16 37 37 H 1.08994 * 109.49143 * 303.14733 * 24 14 13 38 38 H 1.08998 * 109.49269 * 183.05960 * 24 14 13 39 39 H 1.08995 * 109.62730 * 350.89493 * 25 11 9 40 40 H 1.08997 * 109.62585 * 111.47697 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2188 1.1916 0.0000 4 7 3.5399 1.1528 -0.0005 5 6 4.1867 0.0018 -0.0005 6 17 5.9227 0.0101 -0.0005 7 7 3.5527 -1.1524 -0.0005 8 6 2.2224 -1.1974 0.0063 9 6 1.5117 -2.5007 0.0131 10 8 0.9915 -2.9142 -1.0038 11 7 1.4437 -3.2253 1.1475 12 6 1.9747 -2.6972 2.4135 13 6 0.8835 -2.8321 3.4874 14 7 0.4254 -4.2268 3.5402 15 6 -0.4900 -4.4378 4.6696 16 6 0.2577 -4.2490 5.9644 17 1 1.3078 -3.9970 5.9498 18 6 -0.3991 -4.3969 7.1676 19 7 -1.6779 -4.7032 7.1854 20 14 0.5276 -4.1621 8.7724 21 1 1.9440 -3.8243 8.4814 22 1 -0.0950 -3.0584 9.5467 23 1 0.4702 -5.4166 9.5652 24 6 -0.1994 -4.6309 2.2736 25 6 0.8420 -4.5674 1.1512 26 1 -0.3633 0.0861 -1.0241 27 1 -0.3634 0.8437 0.5866 28 1 -0.3632 -0.9300 0.4373 29 1 1.6996 2.1387 0.0004 30 1 2.8550 -3.2685 2.7079 31 1 2.2406 -1.6474 2.2894 32 1 0.0437 -2.1826 3.2402 33 1 1.2917 -2.5463 4.4568 34 1 -1.3075 -3.7189 4.6139 35 1 -0.8926 -5.4499 4.6268 36 1 -2.1398 -4.8076 8.0319 37 1 -1.0239 -3.9564 2.0433 38 1 -0.5763 -5.6498 2.3628 39 1 0.3587 -4.7545 0.1923 40 1 1.6156 -5.3149 1.3266 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193239895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:02 Heat of formation + Delta-G solvation = 2.520741 kcal Electronic energy + Delta-G solvation = -25271.993864 eV Core-core repulsion = 21533.325737 eV Total energy + Delta-G solvation = -3738.668127 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.71090 -41.05554 -39.10949 -38.09173 -36.14483 -35.29699 -34.91507 -34.37843 -32.28459 -30.20968 -28.91833 -27.76143 -26.50287 -24.80912 -24.25149 -23.83184 -22.49992 -20.78726 -19.46736 -19.09667 -18.49723 -17.98754 -16.95633 -16.78695 -16.54189 -16.23790 -16.04045 -15.78924 -15.52166 -15.39274 -15.20845 -14.97960 -14.38637 -14.32861 -14.09838 -13.61975 -13.43026 -13.11642 -12.83999 -12.80769 -12.66453 -12.63328 -12.52357 -12.41240 -12.38769 -12.26639 -12.16433 -11.85881 -11.64264 -11.28195 -10.62120 -10.59286 -10.39549 -10.00053 -9.08971 -8.20170 -6.29792 -0.73643 -0.42638 0.13858 1.09356 1.42401 1.44411 1.51908 1.56610 2.20491 2.40856 2.62707 3.04349 3.11122 3.17447 3.23107 3.47450 3.60428 3.78291 3.91644 4.04170 4.14165 4.16627 4.34740 4.43255 4.59065 4.63778 4.72934 4.77857 4.79305 4.87233 4.94302 5.10152 5.12145 5.19007 5.29415 5.38878 5.64150 5.97336 6.03666 6.24930 6.43435 6.54282 6.64242 6.86043 7.40315 8.91089 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.003337 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.017462 B = 8388.241932 C = 9222.916175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.144 4.144 3 C 0.186 3.814 4 N -0.500 5.500 5 C 0.343 3.657 6 Cl 0.037 6.963 7 N -0.497 5.497 8 C 0.138 3.862 9 C 0.583 3.417 10 O -0.550 6.550 11 N -0.591 5.591 12 C 0.130 3.870 13 C 0.056 3.944 14 N -0.540 5.540 15 C 0.210 3.790 16 C -0.521 4.521 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.282 1.282 24 C 0.044 3.956 25 C 0.126 3.874 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.051 0.949 29 H 0.235 0.765 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.025 0.975 33 H 0.086 0.914 34 H -0.035 1.035 35 H 0.008 0.992 36 H 0.264 0.736 37 H 0.024 0.976 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.755 12.829 -14.885 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.149 4.149 3 C 0.018 3.982 4 N -0.216 5.216 5 C 0.050 3.950 6 Cl 0.065 6.935 7 N -0.216 5.216 8 C -0.009 4.009 9 C 0.368 3.632 10 O -0.427 6.427 11 N -0.322 5.322 12 C 0.007 3.993 13 C -0.073 4.073 14 N -0.265 5.265 15 C 0.084 3.916 16 C -0.560 4.560 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.186 1.186 22 H -0.206 1.206 23 H -0.207 1.207 24 C -0.085 4.085 25 C 0.004 3.996 26 H 0.118 0.882 27 H 0.136 0.864 28 H 0.070 0.930 29 H 0.252 0.748 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.043 0.957 33 H 0.104 0.896 34 H -0.018 1.018 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.917 12.212 -15.233 21.464 hybrid contribution -1.167 0.116 0.904 1.481 sum 7.750 12.328 -14.330 20.430 Atomic orbital electron populations 1.20866 0.86263 1.04526 1.05023 1.22098 1.00937 0.93113 0.98789 1.24054 0.86977 0.99617 0.87528 1.67956 1.11513 1.28439 1.13704 1.23035 0.90737 0.84986 0.96248 1.98446 1.00764 1.98300 1.96025 1.67751 1.09177 1.30389 1.14242 1.21289 0.88952 0.94819 0.95822 1.17871 0.79150 0.82793 0.83384 1.90787 1.48081 1.70568 1.33256 1.48186 1.57907 1.17646 1.08458 1.21930 0.96789 0.99193 0.81414 1.22368 0.96554 0.89199 0.99182 1.61979 1.40675 1.21004 1.02877 1.19370 0.89617 0.94324 0.88323 1.21480 0.96681 1.46967 0.90834 0.91530 1.25851 0.95640 0.94922 1.02952 1.70080 1.10501 1.49494 1.27356 0.85388 0.79053 0.77661 0.78848 1.18559 1.20581 1.20744 1.22451 0.95021 1.01496 0.89554 1.21844 0.96477 0.82072 0.99222 0.88168 0.86432 0.93012 0.74845 0.89640 0.89827 0.95700 0.89579 1.01772 0.97348 0.92726 0.95726 0.89312 0.88086 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.76 71.24 0.70 -0.85 16 2 C -0.14 -2.64 5.95 -19.43 -0.12 -2.75 16 3 C 0.19 2.64 11.03 84.78 0.94 3.57 16 4 N -0.50 -10.04 10.39 -190.75 -1.98 -12.02 16 5 C 0.34 8.11 8.17 180.85 1.48 9.59 16 6 Cl 0.04 0.77 29.26 -2.72 -0.08 0.69 16 7 N -0.50 -13.25 10.37 -179.94 -1.87 -15.12 16 8 C 0.14 3.51 4.56 41.97 0.19 3.70 16 9 C 0.58 17.05 5.90 86.97 0.51 17.57 16 10 O -0.55 -18.60 16.55 -3.64 -0.06 -18.66 16 11 N -0.59 -17.01 3.00 -819.77 -2.46 -19.47 16 12 C 0.13 3.66 6.51 86.50 0.56 4.22 16 13 C 0.06 1.94 5.47 86.54 0.47 2.41 16 14 N -0.54 -21.48 4.62 -898.87 -4.15 -25.63 16 15 C 0.21 10.50 4.72 85.56 0.40 10.91 16 16 C -0.52 -27.86 8.41 25.60 0.22 -27.64 16 17 H 0.07 3.46 7.13 -2.91 -0.02 3.44 16 18 C 0.00 0.25 5.46 84.66 0.46 0.71 16 19 N -0.93 -54.24 13.29 21.45 0.28 -53.95 16 20 Si 0.97 42.49 29.54 68.60 2.03 44.52 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 C 0.04 1.45 5.62 86.39 0.49 1.94 16 25 C 0.13 3.57 6.61 86.35 0.57 4.14 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.12 0.90 8.13 -2.39 -0.02 0.88 16 28 H 0.05 1.01 7.00 -2.38 -0.02 1.00 16 29 H 0.24 0.92 8.06 -2.91 -0.02 0.90 16 30 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.08 2.12 6.45 -2.39 -0.02 2.10 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 3.22 6.67 -2.39 -0.02 3.21 16 34 H -0.04 -1.94 8.13 -2.38 -0.02 -1.96 16 35 H 0.01 0.46 7.97 -2.38 -0.02 0.44 16 36 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 37 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 2.87 7.99 -2.39 -0.02 2.85 16 39 H 0.10 2.75 7.04 -2.39 -0.02 2.73 16 40 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -68.02 350.09 -0.35 -68.37 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 1.07 Total: 3.77 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 6.87 Total: 27.52 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -10.18 Total: -126.20 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.06 Total: -18.66 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.08 Total: 0.69 kcal Total: -68.02 -0.35 -68.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193239895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.887 kcal (2) G-P(sol) polarization free energy of solvation -68.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds