Wall clock time and date at job start Tue Mar 31 2020 13:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38091 * 119.84160 * 2 1 4 4 C 1.39720 * 120.13597 * 180.02562 * 3 2 1 5 5 C 1.43205 * 120.07756 * 179.97438 * 4 3 2 6 6 N 4.80420 * 134.37620 * 359.97287 * 2 1 3 7 7 C 1.39389 * 119.84562 * 359.97438 * 4 3 2 8 8 C 1.39305 * 119.69606 * 0.02562 * 7 4 3 9 9 C 1.47831 * 120.07194 * 179.97438 * 8 7 4 10 10 O 1.21564 * 120.00080 * 179.97438 * 9 8 7 11 11 N 1.34778 * 120.00017 * 359.97438 * 9 8 7 12 12 C 1.39928 * 119.99906 * 175.45899 * 11 9 8 13 13 C 1.39386 * 119.91474 * 325.81745 * 12 11 9 14 14 C 1.38364 * 120.46783 * 180.02562 * 13 12 11 15 15 C 1.38015 * 120.29081 * 0.02562 * 14 13 12 16 16 F 1.35102 * 120.09021 * 179.97438 * 15 14 13 17 17 C 1.41012 * 119.81464 * 359.97438 * 15 14 13 18 18 C 1.41290 * 120.22422 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00607 * 334.94862 * 18 17 15 20 20 C 1.39931 * 119.99697 * 155.21997 * 18 17 15 21 21 N 1.30850 * 119.99890 * 160.49997 * 20 18 17 22 22 Si 1.86801 * 119.99784 * 340.50027 * 20 18 17 23 23 H 1.48503 * 109.46982 * 95.25534 * 22 20 18 24 24 H 1.48494 * 109.46874 * 215.25298 * 22 20 18 25 25 H 1.48494 * 109.47121 * 335.25467 * 22 20 18 26 26 C 1.38169 * 119.91487 * 146.12270 * 12 11 9 27 27 C 1.38053 * 119.85123 * 180.21917 * 2 1 3 28 28 H 1.08994 * 109.47372 * 89.99920 * 1 2 3 29 29 H 1.09001 * 109.46879 * 209.99672 * 1 2 3 30 30 H 1.09004 * 109.47538 * 329.99404 * 1 2 3 31 31 H 1.07996 * 119.93272 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.15272 * 180.02562 * 7 4 3 33 33 H 0.96998 * 120.00171 * 355.46744 * 11 9 8 34 34 H 1.08001 * 119.76723 * 0.02562 * 13 12 11 35 35 H 1.08005 * 119.85545 * 179.97438 * 14 13 12 36 36 H 0.96995 * 119.99775 * 180.02562 * 21 20 18 37 37 H 1.08004 * 120.13854 * 359.97295 * 26 12 11 38 38 H 1.08002 * 119.92287 * 0.03502 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1978 0.0000 4 6 3.5913 1.2050 -0.0005 5 6 4.3026 2.4479 -0.0011 6 7 4.8669 3.4339 -0.0016 7 6 4.2912 -0.0005 -0.0005 8 6 3.5912 -1.2049 -0.0005 9 6 4.3251 -2.4882 -0.0011 10 8 3.7130 -3.5384 -0.0006 11 7 5.6729 -2.4937 -0.0022 12 6 6.3676 -3.7046 0.0932 13 6 5.8459 -4.7470 0.8575 14 6 6.5235 -5.9490 0.9602 15 6 7.7255 -6.1286 0.3062 16 9 8.3839 -7.3037 0.4097 17 6 8.2643 -5.0821 -0.4703 18 6 9.4940 -5.2567 -1.1439 19 1 10.2122 -5.9761 -0.7791 20 6 9.7836 -4.4936 -2.2805 21 7 11.0223 -4.3599 -2.6806 22 14 8.4019 -3.6657 -3.2265 23 1 8.2561 -2.2625 -2.7629 24 1 8.7191 -3.6773 -4.6771 25 1 7.1323 -4.3992 -2.9915 26 6 7.5720 -3.8617 -0.5653 27 6 2.1941 -1.1974 -0.0046 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6505 2.1309 -0.0004 32 1 5.3712 -0.0007 -0.0005 33 1 6.1613 -1.6583 -0.0689 34 1 4.9061 -4.6155 1.3732 35 1 6.1103 -6.7499 1.5554 36 1 11.2230 -3.8306 -3.4682 37 1 7.9780 -3.0521 -1.1537 38 1 1.6504 -2.1305 -0.0087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195429086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:59 Heat of formation + Delta-G solvation = -8.105262 kcal Electronic energy + Delta-G solvation = -25325.909079 eV Core-core repulsion = 21433.459968 eV Total energy + Delta-G solvation = -3892.449112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.39351 -40.70735 -39.27930 -37.42356 -36.75951 -34.63269 -33.76004 -33.16298 -31.88684 -30.65536 -28.53180 -27.35920 -25.35103 -24.65335 -23.68460 -22.13554 -21.27578 -19.84578 -18.90300 -17.72161 -17.21598 -16.66680 -16.50631 -16.38585 -15.55760 -15.31229 -15.00488 -14.61080 -14.46027 -14.20426 -14.13230 -13.76671 -13.72574 -13.47848 -13.42880 -13.28536 -12.84381 -12.56139 -12.36252 -12.19257 -12.05532 -11.99582 -11.88818 -11.76172 -11.50347 -10.96189 -10.73130 -10.35563 -9.90890 -9.83817 -9.42206 -9.32905 -9.26871 -9.24978 -7.92016 -7.20680 -7.14375 -4.64755 0.24740 0.52374 2.07453 2.29620 2.41770 2.43448 2.92282 3.03189 3.11086 3.18050 3.22321 3.42850 3.57605 3.82278 4.21951 4.28643 4.31888 4.64754 4.70769 4.78073 4.89238 5.14682 5.20393 5.22298 5.32762 5.60971 5.66002 5.67367 5.77263 5.81573 5.96259 6.19150 6.23623 6.31827 6.36566 6.52424 6.88515 7.10904 7.14133 7.26971 7.39585 7.43140 7.71336 7.89987 8.15236 8.26268 8.45308 8.56930 9.86646 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.003532 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.097987 B = 7926.730281 C = 9196.369912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.051 4.051 4 C -0.029 4.029 5 C 0.254 3.746 6 N -0.410 5.410 7 C -0.046 4.046 8 C -0.121 4.121 9 C 0.552 3.448 10 O -0.510 6.510 11 N -0.663 5.663 12 C 0.170 3.830 13 C -0.214 4.214 14 C -0.097 4.097 15 C -0.018 4.018 16 F -0.156 7.156 17 C 0.081 3.919 18 C -0.430 4.430 19 H 0.098 0.902 20 C 0.085 3.915 21 N -0.792 5.792 22 Si 0.913 3.087 23 H -0.271 1.271 24 H -0.288 1.288 25 H -0.240 1.240 26 C -0.251 4.251 27 C -0.031 4.031 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.403 0.597 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.289 0.711 37 H 0.110 0.890 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.652 10.683 3.207 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C -0.072 4.072 4 C -0.032 4.032 5 C -0.062 4.062 6 N -0.085 5.085 7 C -0.068 4.068 8 C -0.124 4.124 9 C 0.340 3.660 10 O -0.386 6.386 11 N -0.307 5.307 12 C 0.078 3.922 13 C -0.235 4.235 14 C -0.117 4.117 15 C -0.038 4.038 16 F -0.135 7.135 17 C 0.076 3.924 18 C -0.457 4.457 19 H 0.116 0.884 20 C -0.137 4.137 21 N -0.415 5.415 22 Si 0.739 3.261 23 H -0.197 1.197 24 H -0.216 1.216 25 H -0.163 1.163 26 C -0.272 4.272 27 C -0.050 4.050 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.239 0.761 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.947 11.498 3.052 20.705 hybrid contribution -0.044 0.363 -0.575 0.682 sum -16.990 11.861 2.476 20.868 Atomic orbital electron populations 1.20833 0.89727 1.03560 1.03081 1.19811 0.96961 0.91971 1.00538 1.21237 0.91683 0.98793 0.95440 1.15776 0.92292 0.86681 1.08481 1.25582 0.93743 0.92914 0.93942 1.81290 1.07845 1.10876 1.08508 1.21385 1.00326 0.90262 0.94797 1.19906 0.94467 0.92636 1.05400 1.18118 0.82107 0.88573 0.77238 1.90815 1.67564 1.32317 1.47869 1.43418 1.05938 1.09314 1.72016 1.17367 0.92285 0.85271 0.97281 1.20099 1.02532 0.93720 1.07129 1.20473 0.94040 0.97485 0.99707 1.17725 0.94105 0.82618 1.09344 1.91311 1.81109 1.45656 1.95471 1.17394 0.92809 0.89609 0.92563 1.19456 0.99634 1.18428 1.08202 0.88398 1.26211 0.96587 0.93510 0.97349 1.69693 1.19980 1.29999 1.21794 0.86304 0.82934 0.79689 0.77143 1.19733 1.21589 1.16299 1.20483 0.98899 0.98460 1.09386 1.21451 0.92495 0.98924 0.92159 0.90505 0.90711 0.91028 0.84472 0.84451 0.76141 0.86506 0.87076 0.90030 0.87221 0.83540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 10.00 36.00 0.36 -0.14 16 2 C -0.09 -0.63 5.87 -104.75 -0.61 -1.24 16 3 C -0.05 -0.34 9.39 -39.08 -0.37 -0.70 16 4 C -0.03 -0.24 5.73 -106.99 -0.61 -0.85 16 5 C 0.25 2.55 15.32 -22.47 -0.34 2.21 16 6 N -0.41 -5.11 18.54 41.84 0.78 -4.34 16 7 C -0.05 -0.43 9.24 -38.76 -0.36 -0.79 16 8 C -0.12 -1.32 5.87 -105.03 -0.62 -1.94 16 9 C 0.55 8.41 7.51 -12.34 -0.09 8.32 16 10 O -0.51 -9.39 14.03 5.31 0.07 -9.31 16 11 N -0.66 -10.69 5.28 -10.75 -0.06 -10.75 16 12 C 0.17 3.48 6.25 -83.76 -0.52 2.96 16 13 C -0.21 -4.44 8.66 -39.11 -0.34 -4.78 16 14 C -0.10 -2.08 10.00 -39.62 -0.40 -2.48 16 15 C -0.02 -0.42 7.31 -38.61 -0.28 -0.70 16 16 F -0.16 -3.80 16.71 2.25 0.04 -3.77 16 17 C 0.08 2.02 5.22 -106.78 -0.56 1.46 16 18 C -0.43 -11.44 9.31 -37.79 -0.35 -11.80 16 19 H 0.10 2.78 7.89 -52.49 -0.41 2.37 16 20 C 0.08 2.14 5.41 -17.34 -0.09 2.05 16 21 N -0.79 -20.32 13.93 55.55 0.77 -19.55 16 22 Si 0.91 19.97 24.43 -169.99 -4.15 15.82 16 23 H -0.27 -5.52 6.64 56.52 0.38 -5.14 16 24 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.24 -5.50 6.79 56.52 0.38 -5.12 16 26 C -0.25 -5.67 7.07 -38.71 -0.27 -5.95 16 27 C -0.03 -0.28 9.23 -39.10 -0.36 -0.64 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 31 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.14 1.11 6.41 -52.48 -0.34 0.78 16 33 H 0.40 5.21 6.86 -40.82 -0.28 4.93 16 34 H 0.12 2.32 6.43 -52.49 -0.34 1.98 16 35 H 0.11 2.08 8.06 -52.48 -0.42 1.66 16 36 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 37 H 0.11 2.40 4.17 -52.48 -0.22 2.19 16 38 H 0.15 1.33 7.64 -52.49 -0.40 0.93 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -30.37 338.96 -6.54 -36.91 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.27 Total: 4.91 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -5.82 Total: -15.03 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 1.49 Total: -34.63 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.04 Total: -3.77 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.15 Total: 15.82 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.37 -6.54 -36.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195429086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.806 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds