Wall clock time and date at job start Tue Mar 31 2020 13:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38091 * 119.84160 * 2 1 4 4 C 1.39720 * 120.13597 * 180.02562 * 3 2 1 5 5 C 1.43205 * 120.07756 * 179.97438 * 4 3 2 6 6 N 4.80420 * 134.37620 * 359.97287 * 2 1 3 7 7 C 1.39389 * 119.84562 * 359.97438 * 4 3 2 8 8 C 1.39305 * 119.69606 * 0.02562 * 7 4 3 9 9 C 1.47831 * 120.07194 * 179.97438 * 8 7 4 10 10 O 1.21564 * 120.00080 * 179.97438 * 9 8 7 11 11 N 1.34778 * 120.00017 * 359.97438 * 9 8 7 12 12 C 1.39928 * 119.99906 * 175.45899 * 11 9 8 13 13 C 1.39386 * 119.91474 * 325.81745 * 12 11 9 14 14 C 1.38364 * 120.46783 * 180.02562 * 13 12 11 15 15 C 1.38015 * 120.29081 * 0.02562 * 14 13 12 16 16 F 1.35102 * 120.09021 * 179.97438 * 15 14 13 17 17 C 1.41012 * 119.81464 * 359.97438 * 15 14 13 18 18 C 1.41290 * 120.22422 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00607 * 334.94862 * 18 17 15 20 20 C 1.39931 * 119.99697 * 155.21997 * 18 17 15 21 21 N 1.30850 * 119.99890 * 160.49997 * 20 18 17 22 22 Si 1.86801 * 119.99784 * 340.50027 * 20 18 17 23 23 H 1.48503 * 109.46982 * 95.25534 * 22 20 18 24 24 H 1.48494 * 109.46874 * 215.25298 * 22 20 18 25 25 H 1.48494 * 109.47121 * 335.25467 * 22 20 18 26 26 C 1.38169 * 119.91487 * 146.12270 * 12 11 9 27 27 C 1.38053 * 119.85123 * 180.21917 * 2 1 3 28 28 H 1.08994 * 109.47372 * 89.99920 * 1 2 3 29 29 H 1.09001 * 109.46879 * 209.99672 * 1 2 3 30 30 H 1.09004 * 109.47538 * 329.99404 * 1 2 3 31 31 H 1.07996 * 119.93272 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.15272 * 180.02562 * 7 4 3 33 33 H 0.96998 * 120.00171 * 355.46744 * 11 9 8 34 34 H 1.08001 * 119.76723 * 0.02562 * 13 12 11 35 35 H 1.08005 * 119.85545 * 179.97438 * 14 13 12 36 36 H 0.96995 * 119.99775 * 180.02562 * 21 20 18 37 37 H 1.08004 * 120.13854 * 359.97295 * 26 12 11 38 38 H 1.08002 * 119.92287 * 0.03502 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1978 0.0000 4 6 3.5913 1.2050 -0.0005 5 6 4.3026 2.4479 -0.0011 6 7 4.8669 3.4339 -0.0016 7 6 4.2912 -0.0005 -0.0005 8 6 3.5912 -1.2049 -0.0005 9 6 4.3251 -2.4882 -0.0011 10 8 3.7130 -3.5384 -0.0006 11 7 5.6729 -2.4937 -0.0022 12 6 6.3676 -3.7046 0.0932 13 6 5.8459 -4.7470 0.8575 14 6 6.5235 -5.9490 0.9602 15 6 7.7255 -6.1286 0.3062 16 9 8.3839 -7.3037 0.4097 17 6 8.2643 -5.0821 -0.4703 18 6 9.4940 -5.2567 -1.1439 19 1 10.2122 -5.9761 -0.7791 20 6 9.7836 -4.4936 -2.2805 21 7 11.0223 -4.3599 -2.6806 22 14 8.4019 -3.6657 -3.2265 23 1 8.2561 -2.2625 -2.7629 24 1 8.7191 -3.6773 -4.6771 25 1 7.1323 -4.3992 -2.9915 26 6 7.5720 -3.8617 -0.5653 27 6 2.1941 -1.1974 -0.0046 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6505 2.1309 -0.0004 32 1 5.3712 -0.0007 -0.0005 33 1 6.1613 -1.6583 -0.0689 34 1 4.9061 -4.6155 1.3732 35 1 6.1103 -6.7499 1.5554 36 1 11.2230 -3.8306 -3.4682 37 1 7.9780 -3.0521 -1.1537 38 1 1.6504 -2.1305 -0.0087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195429086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:58 Heat of formation + Delta-G solvation = -25.318289 kcal Electronic energy + Delta-G solvation = -25326.655492 eV Core-core repulsion = 21433.459968 eV Total energy + Delta-G solvation = -3893.195524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.28338 -41.78269 -40.31142 -38.97904 -37.60328 -36.16379 -35.35457 -33.96907 -32.73326 -32.44116 -30.04530 -27.89971 -27.21259 -25.56000 -24.52869 -23.89689 -22.60110 -21.23579 -19.79720 -19.46110 -18.50490 -18.08222 -17.78582 -17.30491 -16.88380 -16.69730 -16.42617 -16.05883 -15.89751 -15.58488 -15.27224 -15.11606 -14.64807 -14.43182 -14.27879 -14.15985 -14.07584 -14.03863 -13.84598 -13.60294 -13.26609 -13.03325 -12.77056 -12.73969 -12.64354 -12.49404 -12.41790 -12.12583 -11.70738 -11.22715 -11.06827 -10.88029 -10.14334 -9.84943 -9.73819 -9.03098 -8.89546 -6.61985 -0.46980 -0.18323 0.47883 0.62720 1.17388 1.33415 1.44688 1.51948 1.52593 1.96187 2.03331 2.06900 2.48176 2.68074 2.79671 3.26726 3.45551 3.65553 3.86316 3.99381 4.03261 4.10995 4.17120 4.33791 4.46596 4.57240 4.58593 4.76207 4.80139 4.84751 4.95900 5.03772 5.11617 5.13791 5.28608 5.41155 5.46027 5.57397 5.57864 5.66488 5.68907 5.99115 6.17755 6.35735 6.43932 6.53103 6.63151 7.04527 8.04809 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.003532 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.097987 B = 7926.730281 C = 9196.369912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.030 4.030 4 C -0.033 4.033 5 C 0.279 3.721 6 N -0.456 5.456 7 C -0.042 4.042 8 C -0.137 4.137 9 C 0.556 3.444 10 O -0.545 6.545 11 N -0.661 5.661 12 C 0.179 3.821 13 C -0.205 4.205 14 C -0.089 4.089 15 C -0.051 4.051 16 F -0.166 7.166 17 C 0.066 3.934 18 C -0.471 4.471 19 H 0.057 0.943 20 C 0.053 3.947 21 N -0.830 5.830 22 Si 0.963 3.037 23 H -0.241 1.241 24 H -0.275 1.275 25 H -0.258 1.258 26 C -0.253 4.253 27 C -0.031 4.031 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.168 0.832 32 H 0.146 0.854 33 H 0.419 0.581 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.300 0.700 37 H 0.118 0.882 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.436 13.395 3.347 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.050 4.050 4 C -0.036 4.036 5 C -0.036 4.036 6 N -0.131 5.131 7 C -0.063 4.063 8 C -0.140 4.140 9 C 0.346 3.654 10 O -0.423 6.423 11 N -0.306 5.306 12 C 0.085 3.915 13 C -0.225 4.225 14 C -0.109 4.109 15 C -0.071 4.071 16 F -0.146 7.146 17 C 0.062 3.938 18 C -0.499 4.499 19 H 0.075 0.925 20 C -0.165 4.165 21 N -0.455 5.455 22 Si 0.786 3.214 23 H -0.165 1.165 24 H -0.202 1.202 25 H -0.182 1.182 26 C -0.275 4.275 27 C -0.051 4.051 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.185 0.815 32 H 0.163 0.837 33 H 0.258 0.742 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.111 0.889 37 H 0.136 0.864 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.726 14.252 3.203 25.356 hybrid contribution 0.904 -0.472 -0.478 1.126 sum -19.822 13.780 2.726 24.294 Atomic orbital electron populations 1.20926 0.87627 1.04681 1.04026 1.20030 0.98274 0.90939 0.99180 1.21595 0.90916 1.00015 0.92499 1.15744 0.92938 0.85484 1.09450 1.25688 0.92742 0.92593 0.92555 1.81329 1.09139 1.12353 1.10278 1.21399 1.00831 0.89936 0.94107 1.19494 0.94842 0.90826 1.08824 1.18714 0.81412 0.89771 0.75491 1.90791 1.68054 1.34049 1.49396 1.43408 1.06549 1.08477 1.72208 1.17407 0.91590 0.86866 0.95589 1.20424 1.02573 0.93395 1.06153 1.20781 0.92691 0.98582 0.98812 1.18060 0.95448 0.82581 1.11015 1.91273 1.81523 1.46090 1.95673 1.17579 0.92646 0.90866 0.92706 1.19359 1.00385 1.19654 1.10518 0.92451 1.26856 0.98540 0.93759 0.97305 1.69707 1.21324 1.31505 1.22930 0.85547 0.79176 0.80031 0.76662 1.16550 1.20182 1.18161 1.20572 0.99539 0.97750 1.09604 1.21566 0.91793 0.99962 0.91731 0.89538 0.90469 0.89160 0.81497 0.83661 0.74232 0.84931 0.84272 0.88949 0.86447 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.49 10.00 71.23 0.71 0.22 16 2 C -0.08 -0.79 5.87 -19.94 -0.12 -0.91 16 3 C -0.03 -0.26 9.39 22.59 0.21 -0.04 16 4 C -0.03 -0.43 5.73 -21.40 -0.12 -0.55 16 5 C 0.28 4.82 15.32 88.33 1.35 6.17 16 6 N -0.46 -10.47 18.54 19.01 0.35 -10.12 16 7 C -0.04 -0.64 9.24 22.80 0.21 -0.43 16 8 C -0.14 -2.61 5.87 -20.13 -0.12 -2.73 16 9 C 0.56 15.67 7.51 86.78 0.65 16.32 16 10 O -0.54 -19.03 14.03 -3.92 -0.05 -19.08 16 11 N -0.66 -19.78 5.28 -306.20 -1.62 -21.40 16 12 C 0.18 7.06 6.25 38.11 0.24 7.30 16 13 C -0.20 -8.14 8.66 22.58 0.20 -7.95 16 14 C -0.09 -3.74 10.00 22.25 0.22 -3.52 16 15 C -0.05 -2.49 7.31 22.90 0.17 -2.33 16 16 F -0.17 -8.45 16.71 44.97 0.75 -7.70 16 17 C 0.07 3.39 5.22 -21.27 -0.11 3.28 16 18 C -0.47 -26.52 9.31 23.43 0.22 -26.30 16 19 H 0.06 3.56 7.89 -2.91 -0.02 3.53 16 20 C 0.05 2.75 5.41 85.25 0.46 3.21 16 21 N -0.83 -44.11 13.93 21.83 0.30 -43.80 16 22 Si 0.96 40.81 24.43 68.60 1.68 42.48 16 23 H -0.24 -8.96 6.64 99.48 0.66 -8.29 16 24 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.26 -11.57 6.79 99.48 0.68 -10.89 16 26 C -0.25 -11.32 7.07 22.84 0.16 -11.16 16 27 C -0.03 -0.47 9.23 22.58 0.21 -0.26 16 28 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 0.34 8.08 -2.39 -0.02 0.32 16 30 H 0.09 0.10 8.08 -2.39 -0.02 0.08 16 31 H 0.17 0.51 8.06 -2.91 -0.02 0.48 16 32 H 0.15 1.92 6.41 -2.91 -0.02 1.90 16 33 H 0.42 9.71 6.86 -92.71 -0.64 9.08 16 34 H 0.13 4.93 6.43 -2.91 -0.02 4.91 16 35 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 36 H 0.30 14.08 8.30 -92.71 -0.77 13.31 16 37 H 0.12 5.00 4.17 -2.91 -0.01 4.98 16 38 H 0.14 2.27 7.64 -2.91 -0.02 2.25 16 Total: -1.00 -69.10 338.96 6.40 -62.71 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.44 Total: 16.56 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 4.55 Total: -19.66 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -0.96 Total: -75.32 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.05 Total: -19.08 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 0.75 Total: -7.70 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.68 Total: 42.48 kcal Total: -69.10 6.40 -62.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195429086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.389 kcal (2) G-P(sol) polarization free energy of solvation -69.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds