Wall clock time and date at job start Tue Mar 31 2020 14:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 N 1.46500 * 109.47172 * 179.97438 * 3 2 1 5 5 C 1.46503 * 120.00663 * 270.00271 * 4 3 2 6 6 C 1.50697 * 109.46889 * 270.00077 * 5 4 3 7 7 H 1.07997 * 120.00120 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99600 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99686 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00090 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.47045 * 90.00558 * 10 8 6 12 12 H 1.48505 * 109.46888 * 209.99760 * 10 8 6 13 13 H 1.48495 * 109.47279 * 330.00115 * 10 8 6 14 14 C 1.34778 * 119.99663 * 89.99709 * 4 3 2 15 15 S 1.71202 * 120.00064 * 180.02562 * 14 4 3 16 16 N 1.34776 * 119.99884 * 0.02562 * 14 4 3 17 17 C 1.40143 * 119.99806 * 184.14506 * 16 14 4 18 18 C 1.38871 * 119.99276 * 134.98961 * 17 16 14 19 19 C 1.38050 * 120.00792 * 180.25273 * 18 17 16 20 20 C 1.38941 * 119.99337 * 359.49230 * 19 18 17 21 21 S 1.76196 * 120.01018 * 180.27731 * 20 19 18 22 22 C 1.81404 * 102.99979 * 179.97438 * 21 20 19 23 23 C 1.38948 * 119.98128 * 0.25099 * 20 19 18 24 24 C 1.38054 * 119.98802 * 0.02562 * 23 20 19 25 25 H 1.08997 * 109.47143 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46982 * 299.99999 * 1 2 3 27 27 H 1.09005 * 109.46570 * 59.99774 * 1 2 3 28 28 H 1.09004 * 109.47406 * 239.99498 * 2 1 3 29 29 H 1.09008 * 109.47064 * 120.00220 * 2 1 3 30 30 H 1.09006 * 109.46986 * 60.00338 * 3 2 1 31 31 H 1.08991 * 109.47257 * 299.99812 * 3 2 1 32 32 H 1.09003 * 109.46391 * 29.99761 * 5 4 3 33 33 H 1.09001 * 109.47339 * 149.99493 * 5 4 3 34 34 H 0.96998 * 119.99758 * 180.02562 * 9 8 6 35 35 H 0.96993 * 120.00107 * 4.14582 * 16 14 4 36 36 H 1.07994 * 119.99513 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.00202 * 179.76922 * 19 18 17 38 38 H 1.09000 * 109.46845 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.47070 * 300.00188 * 22 21 20 40 40 H 1.09002 * 109.47148 * 59.99962 * 22 21 20 41 41 H 1.07990 * 120.00202 * 180.02562 * 23 20 19 42 42 H 1.07996 * 119.99031 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2372 1.4425 1.2696 6 6 4.4882 2.8634 1.7045 7 1 4.1378 3.6842 1.0963 8 6 5.1651 3.1154 2.8789 9 7 5.3847 4.3554 3.2582 10 14 5.7705 1.6957 3.9312 11 1 7.1441 1.3186 3.5110 12 1 5.7850 2.1080 5.3578 13 1 4.8639 0.5319 3.7614 14 6 4.1794 1.4422 -1.1664 15 16 5.8914 1.4415 -1.1657 16 7 3.5059 1.4425 -2.3338 17 6 4.2043 1.3545 -3.5456 18 6 3.7614 0.4936 -4.5412 19 6 4.4520 0.4028 -5.7330 20 6 5.5844 1.1807 -5.9405 21 16 6.4621 1.0706 -7.4643 22 6 7.8200 2.2522 -7.2395 23 6 6.0242 2.0459 -4.9462 24 6 5.3362 2.1319 -3.7524 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.6477 0.9288 2.0291 33 1 5.1896 0.9286 1.1397 34 1 5.8612 4.5327 4.0843 35 1 2.5379 1.5036 -2.3352 36 1 2.8791 -0.1083 -4.3813 37 1 4.1096 -0.2695 -6.5057 38 1 8.4400 2.2681 -8.1359 39 1 7.4106 3.2468 -7.0628 40 1 8.4256 1.9515 -6.3845 41 1 6.9041 2.6510 -5.1073 42 1 5.6778 2.8047 -2.9798 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201177879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:35 Heat of formation + Delta-G solvation = 51.783357 kcal Electronic energy + Delta-G solvation = -22599.691282 eV Core-core repulsion = 19411.496263 eV Total energy + Delta-G solvation = -3188.195019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.06431 -38.50788 -35.53742 -33.73994 -32.42425 -31.24360 -29.97237 -28.96507 -28.12811 -26.81656 -23.78468 -22.88378 -22.25933 -21.90841 -20.46819 -18.30476 -17.79508 -17.43327 -17.00898 -15.72640 -15.34460 -14.98222 -14.90807 -14.59586 -14.36503 -14.20375 -13.95293 -13.79298 -13.48742 -13.20307 -12.80993 -12.66110 -12.43658 -12.28458 -12.16174 -11.99661 -11.71438 -11.58847 -11.22484 -11.01451 -10.86350 -10.63761 -10.47508 -10.34722 -10.33501 -9.79376 -9.51389 -8.95516 -8.63839 -8.48845 -7.35642 -7.05994 -6.39131 -6.13875 -4.13714 1.06708 1.46442 1.50149 2.00932 2.31736 2.46841 3.10900 3.27625 3.32181 3.38326 3.55723 3.78461 4.35864 4.70621 4.80144 4.84607 4.90438 4.93208 4.98984 5.06598 5.17878 5.22431 5.32777 5.46737 5.49695 5.54088 5.60383 5.64334 5.81908 5.91786 5.94000 6.10022 6.12285 6.20095 6.35455 6.47547 6.59786 6.71637 6.95419 7.07948 7.34829 7.46136 7.68493 8.37165 8.84972 9.43734 10.99067 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.003601 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.491024 B = 7773.570170 C = 9289.749942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.091 3.909 4 N -0.529 5.529 5 C 0.208 3.792 6 C -0.523 4.523 7 H 0.074 0.926 8 C 0.081 3.919 9 N -0.893 5.893 10 Si 0.874 3.126 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.268 1.268 14 C 0.557 3.443 15 S -0.629 6.629 16 N -0.651 5.651 17 C 0.137 3.863 18 C -0.112 4.112 19 C -0.100 4.100 20 C -0.084 4.084 21 S -0.132 6.132 22 C -0.142 4.142 23 C -0.128 4.128 24 C -0.046 4.046 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.266 0.734 35 H 0.401 0.599 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.125 0.875 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.404 -7.491 -17.101 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C -0.036 4.036 4 N -0.232 5.232 5 C 0.088 3.912 6 C -0.562 4.562 7 H 0.092 0.908 8 C -0.122 4.122 9 N -0.530 5.530 10 Si 0.700 3.300 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.192 1.192 14 C 0.199 3.801 15 S -0.494 6.494 16 N -0.281 5.281 17 C 0.041 3.959 18 C -0.135 4.135 19 C -0.125 4.125 20 C -0.197 4.197 21 S 0.109 5.891 22 C -0.311 4.311 23 C -0.154 4.154 24 C -0.071 4.071 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.240 0.760 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.143 0.857 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.349 -8.025 -17.755 20.493 hybrid contribution -0.740 0.207 1.895 2.045 sum -7.089 -7.818 -15.860 19.051 Atomic orbital electron populations 1.21696 0.94679 1.02044 1.02185 1.21977 0.96448 0.96604 1.03180 1.21936 0.80175 0.97296 1.04152 1.47493 1.05883 1.63927 1.05882 1.20336 0.93700 1.00160 0.76965 1.20975 1.37947 0.90047 1.07240 0.90779 1.24716 0.94811 0.95530 0.97183 1.69873 1.41022 1.18626 1.23525 0.86891 0.80655 0.82715 0.79690 1.19382 1.21119 1.19249 1.22253 0.95497 0.81113 0.81198 1.93128 0.89677 1.73786 1.92773 1.42313 1.09261 1.73644 1.02836 1.17407 0.96014 0.97927 0.84523 1.20757 1.01267 0.97688 0.93741 1.20330 0.94688 1.00156 0.97356 1.21609 0.99369 1.01428 0.97342 1.85253 1.30257 1.54910 1.18664 1.23657 0.99383 1.01273 1.06755 1.20980 1.01213 1.00244 0.92939 1.21592 0.92846 0.97280 0.95427 0.92320 0.92069 0.92664 0.91984 0.90743 0.87853 0.91360 0.94579 0.91231 0.92416 0.75986 0.85701 0.85511 0.87677 0.89638 0.89479 0.85672 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.89 16 2 C -0.14 -1.59 6.26 -26.73 -0.17 -1.76 16 3 C 0.09 1.23 5.21 -4.04 -0.02 1.21 16 4 N -0.53 -9.89 2.46 -177.08 -0.43 -10.33 16 5 C 0.21 4.75 3.99 -5.19 -0.02 4.73 16 6 C -0.52 -14.24 9.94 -34.44 -0.34 -14.59 16 7 H 0.07 2.24 8.06 -52.49 -0.42 1.81 16 8 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 9 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 10 Si 0.87 21.11 27.47 -169.99 -4.67 16.45 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 14 C 0.56 10.61 7.56 -86.92 -0.66 9.95 16 15 S -0.63 -14.68 24.22 -107.50 -2.60 -17.29 16 16 N -0.65 -9.58 5.20 -11.35 -0.06 -9.64 16 17 C 0.14 2.01 5.94 -83.59 -0.50 1.52 16 18 C -0.11 -1.35 9.96 -39.42 -0.39 -1.75 16 19 C -0.10 -1.20 9.78 -39.39 -0.39 -1.58 16 20 C -0.08 -1.07 6.11 -39.06 -0.24 -1.31 16 21 S -0.13 -1.42 22.56 -107.50 -2.43 -3.85 16 22 C -0.14 -1.17 9.15 101.05 0.92 -0.25 16 23 C -0.13 -1.77 9.36 -39.39 -0.37 -2.14 16 24 C -0.05 -0.74 7.86 -39.42 -0.31 -1.05 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.10 1.48 8.07 -51.93 -0.42 1.06 16 31 H 0.07 0.76 6.31 -51.93 -0.33 0.44 16 32 H 0.04 0.78 7.13 -51.93 -0.37 0.41 16 33 H 0.07 1.74 6.01 -51.93 -0.31 1.43 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.40 4.60 6.52 -40.82 -0.27 4.33 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 38 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.08 0.66 7.74 -51.93 -0.40 0.26 16 40 H 0.09 0.74 7.74 -51.92 -0.40 0.34 16 41 H 0.13 1.54 5.87 -52.49 -0.31 1.23 16 42 H 0.16 2.90 6.09 -44.12 -0.27 2.63 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -33.27 365.93 -12.16 -45.43 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.05 Total: 5.52 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -2.20 Total: -5.72 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.28 Total: -46.05 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: -16.10 SS G_CDS: -5.03 Total: -21.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.27 -12.16 -45.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201177879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.212 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds