Wall clock time and date at job start Tue Mar 31 2020 14:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 N 1.46500 * 109.47172 * 179.97438 * 3 2 1 5 5 C 1.46503 * 120.00663 * 270.00271 * 4 3 2 6 6 C 1.50697 * 109.46889 * 270.00077 * 5 4 3 7 7 H 1.07997 * 120.00120 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99600 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99686 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00090 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.47045 * 90.00558 * 10 8 6 12 12 H 1.48505 * 109.46888 * 209.99760 * 10 8 6 13 13 H 1.48495 * 109.47279 * 330.00115 * 10 8 6 14 14 C 1.34778 * 119.99663 * 89.99709 * 4 3 2 15 15 S 1.71202 * 120.00064 * 180.02562 * 14 4 3 16 16 N 1.34776 * 119.99884 * 0.02562 * 14 4 3 17 17 C 1.40143 * 119.99806 * 184.14506 * 16 14 4 18 18 C 1.38871 * 119.99276 * 134.98961 * 17 16 14 19 19 C 1.38050 * 120.00792 * 180.25273 * 18 17 16 20 20 C 1.38941 * 119.99337 * 359.49230 * 19 18 17 21 21 S 1.76196 * 120.01018 * 180.27731 * 20 19 18 22 22 C 1.81404 * 102.99979 * 179.97438 * 21 20 19 23 23 C 1.38948 * 119.98128 * 0.25099 * 20 19 18 24 24 C 1.38054 * 119.98802 * 0.02562 * 23 20 19 25 25 H 1.08997 * 109.47143 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46982 * 299.99999 * 1 2 3 27 27 H 1.09005 * 109.46570 * 59.99774 * 1 2 3 28 28 H 1.09004 * 109.47406 * 239.99498 * 2 1 3 29 29 H 1.09008 * 109.47064 * 120.00220 * 2 1 3 30 30 H 1.09006 * 109.46986 * 60.00338 * 3 2 1 31 31 H 1.08991 * 109.47257 * 299.99812 * 3 2 1 32 32 H 1.09003 * 109.46391 * 29.99761 * 5 4 3 33 33 H 1.09001 * 109.47339 * 149.99493 * 5 4 3 34 34 H 0.96998 * 119.99758 * 180.02562 * 9 8 6 35 35 H 0.96993 * 120.00107 * 4.14582 * 16 14 4 36 36 H 1.07994 * 119.99513 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.00202 * 179.76922 * 19 18 17 38 38 H 1.09000 * 109.46845 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.47070 * 300.00188 * 22 21 20 40 40 H 1.09002 * 109.47148 * 59.99962 * 22 21 20 41 41 H 1.07990 * 120.00202 * 180.02562 * 23 20 19 42 42 H 1.07996 * 119.99031 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2372 1.4425 1.2696 6 6 4.4882 2.8634 1.7045 7 1 4.1378 3.6842 1.0963 8 6 5.1651 3.1154 2.8789 9 7 5.3847 4.3554 3.2582 10 14 5.7705 1.6957 3.9312 11 1 7.1441 1.3186 3.5110 12 1 5.7850 2.1080 5.3578 13 1 4.8639 0.5319 3.7614 14 6 4.1794 1.4422 -1.1664 15 16 5.8914 1.4415 -1.1657 16 7 3.5059 1.4425 -2.3338 17 6 4.2043 1.3545 -3.5456 18 6 3.7614 0.4936 -4.5412 19 6 4.4520 0.4028 -5.7330 20 6 5.5844 1.1807 -5.9405 21 16 6.4621 1.0706 -7.4643 22 6 7.8200 2.2522 -7.2395 23 6 6.0242 2.0459 -4.9462 24 6 5.3362 2.1319 -3.7524 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.6477 0.9288 2.0291 33 1 5.1896 0.9286 1.1397 34 1 5.8612 4.5327 4.0843 35 1 2.5379 1.5036 -2.3352 36 1 2.8791 -0.1083 -4.3813 37 1 4.1096 -0.2695 -6.5057 38 1 8.4400 2.2681 -8.1359 39 1 7.4106 3.2468 -7.0628 40 1 8.4256 1.9515 -6.3845 41 1 6.9041 2.6510 -5.1073 42 1 5.6778 2.8047 -2.9798 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201177879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:35 Heat of formation + Delta-G solvation = 33.520020 kcal Electronic energy + Delta-G solvation = -22600.483240 eV Core-core repulsion = 19411.496263 eV Total energy + Delta-G solvation = -3188.986976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.33981 -39.75487 -36.80228 -35.13575 -34.16942 -32.26017 -31.30504 -29.94438 -29.49419 -28.00697 -25.36564 -24.08469 -23.35916 -23.18947 -21.75237 -19.59099 -19.17682 -19.01618 -18.50539 -17.15458 -16.52544 -16.40970 -16.05492 -15.81569 -15.56370 -15.35309 -15.17426 -14.72527 -14.55671 -14.47391 -14.18389 -13.89964 -13.67744 -13.55046 -13.20882 -13.05812 -12.95984 -12.82768 -12.54549 -12.38954 -12.18479 -12.05826 -12.02315 -11.77547 -11.71645 -11.26079 -10.91851 -10.80380 -10.03459 -9.80858 -8.82711 -8.38928 -8.32042 -8.03768 -6.36232 -0.12123 0.44758 0.60622 0.61830 0.94854 1.32176 1.41104 1.43548 1.47036 1.61800 2.26369 2.31982 2.70719 3.04274 3.68803 3.84177 3.88273 3.99863 4.15176 4.26075 4.28599 4.33536 4.34563 4.40027 4.51976 4.58573 4.62228 4.79333 4.85186 4.89223 4.90431 5.07391 5.11136 5.14777 5.26595 5.30097 5.33621 5.38942 5.40093 5.64768 5.69072 5.97737 6.21507 6.35393 6.61712 7.24814 8.84386 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.003601 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.491024 B = 7773.570170 C = 9289.749942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.083 3.917 4 N -0.532 5.532 5 C 0.221 3.779 6 C -0.518 4.518 7 H 0.030 0.970 8 C 0.021 3.979 9 N -0.943 5.943 10 Si 0.939 3.061 11 H -0.280 1.280 12 H -0.277 1.277 13 H -0.235 1.235 14 C 0.577 3.423 15 S -0.728 6.728 16 N -0.621 5.621 17 C 0.111 3.889 18 C -0.094 4.094 19 C -0.100 4.100 20 C -0.088 4.088 21 S -0.128 6.128 22 C -0.142 4.142 23 C -0.138 4.138 24 C -0.067 4.067 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.421 0.579 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.129 0.871 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.131 0.869 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.753 -10.075 -18.898 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.041 4.041 4 N -0.234 5.234 5 C 0.099 3.901 6 C -0.557 4.557 7 H 0.048 0.952 8 C -0.177 4.177 9 N -0.583 5.583 10 Si 0.762 3.238 11 H -0.206 1.206 12 H -0.203 1.203 13 H -0.158 1.158 14 C 0.215 3.785 15 S -0.595 6.595 16 N -0.251 5.251 17 C 0.016 3.984 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.201 4.201 21 S 0.114 5.886 22 C -0.310 4.310 23 C -0.163 4.163 24 C -0.091 4.091 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.264 0.736 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.147 0.853 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.149 0.851 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.780 -10.622 -19.629 23.983 hybrid contribution -0.055 1.100 2.221 2.479 sum -8.835 -9.522 -17.408 21.720 Atomic orbital electron populations 1.21677 0.92226 1.03143 1.03028 1.21912 0.98331 0.94105 1.02909 1.22332 0.76738 0.99742 1.05283 1.47408 1.07881 1.63592 1.04498 1.19922 0.93956 0.97039 0.79194 1.21133 1.36993 0.91221 1.06358 0.95201 1.25619 0.95096 0.98139 0.98858 1.70023 1.42665 1.21126 1.24449 0.85850 0.79793 0.80287 0.77843 1.20635 1.20275 1.15848 1.21687 0.93736 0.80592 0.82516 1.93304 0.94568 1.77778 1.93843 1.42102 1.10040 1.71402 1.01604 1.17610 0.96418 0.99477 0.84935 1.21057 1.01755 0.96354 0.92479 1.20754 0.94001 0.99836 0.97847 1.21892 0.99765 1.00586 0.97875 1.85222 1.30779 1.55626 1.16961 1.23772 0.98705 1.00747 1.07781 1.21039 1.01409 1.01031 0.92812 1.21353 0.94275 0.97881 0.95614 0.91093 0.92195 0.90945 0.91350 0.92014 0.88505 0.88607 0.92288 0.93120 0.92345 0.73623 0.82189 0.82721 0.85312 0.89155 0.89888 0.85133 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.91 71.98 0.71 -1.16 16 2 C -0.13 -2.56 6.26 30.59 0.19 -2.37 16 3 C 0.08 2.10 5.21 86.38 0.45 2.55 16 4 N -0.53 -19.67 2.46 -714.17 -1.75 -21.43 16 5 C 0.22 10.10 3.99 85.63 0.34 10.44 16 6 C -0.52 -29.16 9.94 25.60 0.25 -28.90 16 7 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 8 C 0.02 1.24 5.47 84.65 0.46 1.70 16 9 N -0.94 -58.93 13.96 21.45 0.30 -58.63 16 10 Si 0.94 44.05 27.47 68.60 1.88 45.94 16 11 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 14 C 0.58 22.10 7.56 179.05 1.35 23.45 16 15 S -0.73 -35.71 24.22 -56.49 -1.37 -37.08 16 16 N -0.62 -17.52 5.20 -189.81 -0.99 -18.50 16 17 C 0.11 3.15 5.94 38.11 0.23 3.38 16 18 C -0.09 -1.99 9.96 22.38 0.22 -1.77 16 19 C -0.10 -2.08 9.78 22.39 0.22 -1.86 16 20 C -0.09 -2.10 6.11 22.61 0.14 -1.97 16 21 S -0.13 -2.49 22.56 -56.49 -1.27 -3.76 16 22 C -0.14 -2.13 9.15 113.37 1.04 -1.09 16 23 C -0.14 -3.85 9.36 22.40 0.21 -3.64 16 24 C -0.07 -2.20 7.86 22.38 0.18 -2.03 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.06 1.36 8.14 -2.38 -0.02 1.35 16 30 H 0.10 2.62 8.07 -2.38 -0.02 2.61 16 31 H 0.10 1.86 6.31 -2.39 -0.02 1.85 16 32 H 0.06 2.46 7.13 -2.39 -0.02 2.44 16 33 H 0.05 2.57 6.01 -2.39 -0.01 2.55 16 34 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.42 8.44 6.52 -92.71 -0.60 7.84 16 36 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 37 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.29 7.74 -2.39 -0.02 1.27 16 40 H 0.08 1.35 7.74 -2.39 -0.02 1.33 16 41 H 0.13 3.33 5.87 -2.92 -0.02 3.32 16 42 H 0.12 4.81 6.09 -8.23 -0.05 4.76 16 Total: -1.00 -78.26 365.93 3.13 -75.13 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.33 Total: 21.60 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 6.00 Total: -3.26 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -2.44 Total: -98.56 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.94 kcal Atomic # 16 Polarization: -38.20 SS G_CDS: -2.64 Total: -40.85 kcal Total: -78.26 3.13 -75.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201177879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.650 kcal (2) G-P(sol) polarization free energy of solvation -78.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds