Wall clock time and date at job start Tue Mar 31 2020 14:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47036 * 2 1 4 4 C 1.52995 * 109.46851 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47035 * 179.97438 * 4 3 2 6 6 C 1.37039 * 120.00126 * 270.00079 * 5 4 3 7 7 H 1.08003 * 119.99763 * 139.19210 * 6 5 4 8 8 C 1.38878 * 120.00279 * 319.18593 * 6 5 4 9 9 N 1.31486 * 120.00176 * 340.85267 * 8 6 5 10 10 Si 1.86802 * 120.00193 * 160.85026 * 8 6 5 11 11 H 1.48498 * 109.47212 * 60.00351 * 10 8 6 12 12 H 1.48496 * 109.47124 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47134 * 300.00408 * 10 8 6 14 14 C 1.34773 * 119.99565 * 90.00251 * 5 4 3 15 15 S 1.71204 * 120.00453 * 4.97297 * 14 5 4 16 16 N 1.34779 * 120.00077 * 184.97425 * 14 5 4 17 17 C 1.40105 * 119.99836 * 79.64315 * 16 14 5 18 18 C 1.38885 * 119.99202 * 358.55303 * 17 16 14 19 19 C 1.38045 * 120.00530 * 180.23095 * 18 17 16 20 20 C 1.38944 * 119.99179 * 359.50911 * 19 18 17 21 21 S 1.76198 * 120.00729 * 180.27703 * 20 19 18 22 22 C 1.81402 * 103.00075 * 180.02562 * 21 20 19 23 23 C 1.38948 * 119.98393 * 0.25891 * 20 19 18 24 24 C 1.38038 * 119.99451 * 359.97438 * 23 20 19 25 25 H 1.09001 * 109.46676 * 60.00159 * 1 2 3 26 26 H 1.08997 * 109.46912 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47209 * 300.00250 * 1 2 3 28 28 H 1.09004 * 109.46662 * 239.99880 * 2 1 3 29 29 H 1.08991 * 109.46743 * 119.99879 * 2 1 3 30 30 H 1.08994 * 109.47326 * 59.99822 * 3 2 1 31 31 H 1.09001 * 109.46732 * 299.99476 * 3 2 1 32 32 H 1.09007 * 109.47418 * 60.00211 * 4 3 2 33 33 H 1.08993 * 109.47313 * 300.00107 * 4 3 2 34 34 H 0.96993 * 120.00341 * 185.02332 * 9 8 6 35 35 H 0.96996 * 120.00544 * 259.64974 * 16 14 5 36 36 H 1.07999 * 119.99651 * 359.97438 * 18 17 16 37 37 H 1.07998 * 120.00081 * 179.79254 * 19 18 17 38 38 H 1.08997 * 109.47333 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.47198 * 300.00297 * 22 21 20 40 40 H 1.09004 * 109.46828 * 60.00133 * 22 21 20 41 41 H 1.08002 * 120.00135 * 180.02562 * 23 20 19 42 42 H 1.08004 * 119.99792 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2873 3.4690 -1.1870 7 1 4.0054 4.5053 -1.3014 8 6 4.8818 2.7905 -2.2429 9 7 5.5586 1.6861 -2.0169 10 14 4.7200 3.4469 -3.9843 11 1 5.3077 4.8087 -4.0567 12 1 5.4387 2.5466 -4.9214 13 1 3.2843 3.5068 -4.3593 14 6 4.2825 3.4596 1.1670 15 16 4.1194 2.6151 2.6473 16 7 4.6351 4.7604 1.1687 17 6 3.6585 5.7512 1.0027 18 6 2.3313 5.3918 0.8064 19 6 1.3695 6.3676 0.6382 20 6 1.7277 7.7096 0.6753 21 16 0.4992 8.9556 0.4679 22 6 1.4527 10.4937 0.5939 23 6 3.0548 8.0688 0.8766 24 6 4.0168 7.0924 1.0399 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9562 -0.8901 32 1 3.9338 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 6.0346 1.2520 -2.7420 35 1 5.5650 5.0108 1.2847 36 1 2.0525 4.3487 0.7813 37 1 0.3381 6.0880 0.4822 38 1 0.7837 11.3464 0.4780 39 1 1.9377 10.5417 1.5688 40 1 2.2097 10.5171 -0.1901 41 1 3.3334 9.1118 0.9059 42 1 5.0483 7.3716 1.1968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201181126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:30 Heat of formation + Delta-G solvation = 33.595118 kcal Electronic energy + Delta-G solvation = -23172.992465 eV Core-core repulsion = 19984.008745 eV Total energy + Delta-G solvation = -3188.983720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.64891 -38.01201 -35.41580 -34.17494 -32.58786 -30.93625 -29.76028 -28.76073 -28.34083 -26.22447 -23.91802 -22.44492 -22.24209 -20.94493 -20.65512 -18.11151 -17.60564 -17.03680 -16.54637 -16.20476 -15.31960 -14.90807 -14.71359 -14.38177 -14.23824 -13.85848 -13.83179 -13.64171 -13.25898 -12.89854 -12.74999 -12.61981 -12.49088 -12.10516 -11.96269 -11.70781 -11.60697 -11.10114 -10.96995 -10.91211 -10.80504 -10.69628 -10.57024 -10.18967 -10.13944 -9.91454 -9.77801 -9.16657 -8.70676 -8.19363 -7.34924 -6.95695 -6.73862 -6.26588 -4.83251 1.66407 1.68461 1.69207 1.99650 2.57008 2.79533 2.82647 2.84125 3.25131 3.60705 3.96097 4.15434 4.31214 4.59102 4.98114 4.98984 5.05610 5.16463 5.37447 5.40889 5.49860 5.53619 5.62037 5.77441 5.86966 5.93860 6.09453 6.16320 6.18947 6.22062 6.34901 6.42599 6.44081 6.57834 6.61042 6.66675 6.69053 6.78218 7.00362 7.02899 7.25928 7.56443 7.85199 8.07733 8.32597 8.71404 9.73646 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010247 B = 0.004507 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.787252 B = 6211.187328 C = 6846.201006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.122 4.122 4 C 0.082 3.918 5 N -0.287 5.287 6 C -0.344 4.344 7 H 0.113 0.887 8 C 0.062 3.938 9 N -0.810 5.810 10 Si 0.933 3.067 11 H -0.262 1.262 12 H -0.274 1.274 13 H -0.260 1.260 14 C 0.454 3.546 15 S -0.771 6.771 16 N -0.661 5.661 17 C 0.231 3.769 18 C -0.154 4.154 19 C -0.050 4.050 20 C -0.144 4.144 21 S -0.141 6.141 22 C -0.139 4.139 23 C -0.087 4.087 24 C -0.172 4.172 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.290 0.710 35 H 0.410 0.590 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 8.810 -3.818 11.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.161 4.161 4 C -0.042 4.042 5 N 0.038 4.962 6 C -0.479 4.479 7 H 0.131 0.869 8 C -0.155 4.155 9 N -0.438 5.438 10 Si 0.756 3.244 11 H -0.187 1.187 12 H -0.198 1.198 13 H -0.184 1.184 14 C 0.097 3.903 15 S -0.639 6.639 16 N -0.290 5.290 17 C 0.124 3.876 18 C -0.179 4.179 19 C -0.074 4.074 20 C -0.258 4.258 21 S 0.098 5.902 22 C -0.308 4.308 23 C -0.110 4.110 24 C -0.196 4.196 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.250 0.750 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.137 0.863 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.753 7.703 -3.369 10.784 hybrid contribution 1.969 0.948 -1.380 2.585 sum -4.783 8.652 -4.749 10.968 Atomic orbital electron populations 1.21743 0.96190 1.00989 1.01646 1.21366 0.95352 0.96670 1.01985 1.21769 0.95252 0.97048 1.02053 1.22310 0.93239 0.82203 1.06439 1.44248 1.36144 1.11520 1.04247 1.20188 1.40825 0.98756 0.88128 0.86903 1.25743 0.93036 0.95066 1.01648 1.69887 1.21961 1.16568 1.35370 0.85857 0.79979 0.79596 0.78971 1.18674 1.19823 1.18428 1.21111 0.94804 0.85512 0.88909 1.92580 1.79196 1.70479 1.21598 1.41268 1.08868 1.01634 1.77231 1.17895 0.88963 0.88056 0.92658 1.20649 0.91259 0.99805 1.06167 1.20406 0.98923 0.90167 0.97883 1.21186 0.95895 0.96215 1.12491 1.85203 1.14550 0.98121 1.92312 1.23571 1.03950 0.97899 1.05370 1.20745 0.91400 0.98663 1.00240 1.20390 0.99578 0.90518 1.09156 0.93076 0.93143 0.92757 0.92289 0.91659 0.91548 0.92284 0.87406 0.87858 0.89875 0.75005 0.85665 0.85933 0.87989 0.90030 0.90056 0.86289 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.95 16 3 C -0.12 -2.26 5.54 -26.73 -0.15 -2.41 16 4 C 0.08 1.75 4.83 -4.04 -0.02 1.73 16 5 N -0.29 -6.41 2.36 -116.74 -0.28 -6.69 16 6 C -0.34 -7.56 8.70 -14.99 -0.13 -7.69 16 7 H 0.11 2.49 6.75 -52.48 -0.35 2.13 16 8 C 0.06 1.32 4.98 -17.46 -0.09 1.23 16 9 N -0.81 -18.10 11.56 55.49 0.64 -17.46 16 10 Si 0.93 16.63 29.60 -169.99 -5.03 11.60 16 11 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 12 H -0.27 -4.81 7.11 56.52 0.40 -4.40 16 13 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 14 C 0.45 10.44 5.35 -86.92 -0.46 9.97 16 15 S -0.77 -20.13 28.79 -107.50 -3.09 -23.23 16 16 N -0.66 -13.35 4.54 -11.35 -0.05 -13.40 16 17 C 0.23 4.28 5.64 -83.60 -0.47 3.81 16 18 C -0.15 -2.92 9.06 -39.41 -0.36 -3.27 16 19 C -0.05 -0.84 9.78 -39.39 -0.39 -1.22 16 20 C -0.14 -2.20 6.11 -39.06 -0.24 -2.44 16 21 S -0.14 -1.81 22.56 -107.50 -2.43 -4.23 16 22 C -0.14 -1.25 9.15 101.05 0.92 -0.33 16 23 C -0.09 -1.25 9.36 -39.39 -0.37 -1.62 16 24 C -0.17 -2.70 9.89 -39.42 -0.39 -3.09 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.11 2.37 5.68 -51.93 -0.29 2.08 16 33 H 0.10 2.41 6.47 -51.93 -0.34 2.08 16 34 H 0.29 6.02 8.32 -40.82 -0.34 5.68 16 35 H 0.41 7.63 8.82 -40.82 -0.36 7.27 16 36 H 0.13 2.61 6.90 -52.49 -0.36 2.25 16 37 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.69 7.74 -51.92 -0.40 0.29 16 40 H 0.08 0.69 7.75 -51.92 -0.40 0.29 16 41 H 0.12 1.38 5.87 -52.49 -0.31 1.07 16 42 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -27.44 370.48 -12.76 -40.21 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -6.18 Total: 16.50 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.93 Total: -8.88 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.31 Total: -37.55 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 16 Polarization: -21.94 SS G_CDS: -5.52 Total: -27.46 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.44 -12.76 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201181126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.801 kcal (2) G-P(sol) polarization free energy of solvation -27.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds