Wall clock time and date at job start Tue Mar 31 2020 14:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47036 * 2 1 4 4 C 1.52995 * 109.46851 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47035 * 179.97438 * 4 3 2 6 6 C 1.37039 * 120.00126 * 270.00079 * 5 4 3 7 7 H 1.08003 * 119.99763 * 139.19210 * 6 5 4 8 8 C 1.38878 * 120.00279 * 319.18593 * 6 5 4 9 9 N 1.31486 * 120.00176 * 340.85267 * 8 6 5 10 10 Si 1.86802 * 120.00193 * 160.85026 * 8 6 5 11 11 H 1.48498 * 109.47212 * 60.00351 * 10 8 6 12 12 H 1.48496 * 109.47124 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47134 * 300.00408 * 10 8 6 14 14 C 1.34773 * 119.99565 * 90.00251 * 5 4 3 15 15 S 1.71204 * 120.00453 * 4.97297 * 14 5 4 16 16 N 1.34779 * 120.00077 * 184.97425 * 14 5 4 17 17 C 1.40105 * 119.99836 * 79.64315 * 16 14 5 18 18 C 1.38885 * 119.99202 * 358.55303 * 17 16 14 19 19 C 1.38045 * 120.00530 * 180.23095 * 18 17 16 20 20 C 1.38944 * 119.99179 * 359.50911 * 19 18 17 21 21 S 1.76198 * 120.00729 * 180.27703 * 20 19 18 22 22 C 1.81402 * 103.00075 * 180.02562 * 21 20 19 23 23 C 1.38948 * 119.98393 * 0.25891 * 20 19 18 24 24 C 1.38038 * 119.99451 * 359.97438 * 23 20 19 25 25 H 1.09001 * 109.46676 * 60.00159 * 1 2 3 26 26 H 1.08997 * 109.46912 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47209 * 300.00250 * 1 2 3 28 28 H 1.09004 * 109.46662 * 239.99880 * 2 1 3 29 29 H 1.08991 * 109.46743 * 119.99879 * 2 1 3 30 30 H 1.08994 * 109.47326 * 59.99822 * 3 2 1 31 31 H 1.09001 * 109.46732 * 299.99476 * 3 2 1 32 32 H 1.09007 * 109.47418 * 60.00211 * 4 3 2 33 33 H 1.08993 * 109.47313 * 300.00107 * 4 3 2 34 34 H 0.96993 * 120.00341 * 185.02332 * 9 8 6 35 35 H 0.96996 * 120.00544 * 259.64974 * 16 14 5 36 36 H 1.07999 * 119.99651 * 359.97438 * 18 17 16 37 37 H 1.07998 * 120.00081 * 179.79254 * 19 18 17 38 38 H 1.08997 * 109.47333 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.47198 * 300.00297 * 22 21 20 40 40 H 1.09004 * 109.46828 * 60.00133 * 22 21 20 41 41 H 1.08002 * 120.00135 * 180.02562 * 23 20 19 42 42 H 1.08004 * 119.99792 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2873 3.4690 -1.1870 7 1 4.0054 4.5053 -1.3014 8 6 4.8818 2.7905 -2.2429 9 7 5.5586 1.6861 -2.0169 10 14 4.7200 3.4469 -3.9843 11 1 5.3077 4.8087 -4.0567 12 1 5.4387 2.5466 -4.9214 13 1 3.2843 3.5068 -4.3593 14 6 4.2825 3.4596 1.1670 15 16 4.1194 2.6151 2.6473 16 7 4.6351 4.7604 1.1687 17 6 3.6585 5.7512 1.0027 18 6 2.3313 5.3918 0.8064 19 6 1.3695 6.3676 0.6382 20 6 1.7277 7.7096 0.6753 21 16 0.4992 8.9556 0.4679 22 6 1.4527 10.4937 0.5939 23 6 3.0548 8.0688 0.8766 24 6 4.0168 7.0924 1.0399 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9562 -0.8901 32 1 3.9338 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 6.0346 1.2520 -2.7420 35 1 5.5650 5.0108 1.2847 36 1 2.0525 4.3487 0.7813 37 1 0.3381 6.0880 0.4822 38 1 0.7837 11.3464 0.4780 39 1 1.9377 10.5417 1.5688 40 1 2.2097 10.5171 -0.1901 41 1 3.3334 9.1118 0.9059 42 1 5.0483 7.3716 1.1968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201181126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:30 Heat of formation + Delta-G solvation = 22.428387 kcal Electronic energy + Delta-G solvation = -23173.476691 eV Core-core repulsion = 19984.008745 eV Total energy + Delta-G solvation = -3189.467946 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.16891 -39.54506 -36.89034 -35.67845 -34.24910 -32.16256 -31.06150 -29.99503 -29.46981 -27.91905 -25.41561 -23.77072 -23.68876 -22.51800 -22.09371 -19.74053 -18.94753 -18.39463 -18.25501 -17.89318 -16.90775 -16.31432 -15.78275 -15.72674 -15.60434 -15.24384 -15.12480 -14.70649 -14.48731 -14.13140 -14.06821 -14.00042 -13.72679 -13.52738 -13.40896 -13.11347 -12.81147 -12.64589 -12.44647 -12.24230 -12.21933 -12.12429 -11.91777 -11.70587 -11.53462 -11.41312 -11.11917 -10.85993 -9.98510 -9.51278 -9.14458 -8.80650 -8.40044 -7.88992 -6.66370 0.18967 0.39544 0.41483 0.71083 1.28478 1.40055 1.44765 1.57244 1.62388 2.06526 2.35243 2.58747 2.78629 2.98582 3.82139 3.94916 3.97851 4.01191 4.17668 4.34028 4.35279 4.36170 4.40805 4.49100 4.60227 4.66952 4.72582 4.86460 4.90554 4.90716 4.95093 4.98064 5.10125 5.14976 5.22389 5.27474 5.31528 5.35256 5.41493 5.49573 5.70130 5.91616 6.26985 6.50261 6.61730 6.96600 8.04275 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010247 B = 0.004507 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.787252 B = 6211.187328 C = 6846.201006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.108 4.108 4 C 0.085 3.915 5 N -0.278 5.278 6 C -0.350 4.350 7 H 0.115 0.885 8 C 0.034 3.966 9 N -0.831 5.831 10 Si 0.998 3.002 11 H -0.257 1.257 12 H -0.265 1.265 13 H -0.257 1.257 14 C 0.453 3.547 15 S -0.858 6.858 16 N -0.661 5.661 17 C 0.202 3.798 18 C -0.173 4.173 19 C -0.061 4.061 20 C -0.141 4.141 21 S -0.156 6.156 22 C -0.133 4.133 23 C -0.081 4.081 24 C -0.164 4.164 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.300 0.700 35 H 0.415 0.585 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.156 0.844 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.883 11.470 -6.299 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.147 4.147 4 C -0.039 4.039 5 N 0.051 4.949 6 C -0.486 4.486 7 H 0.133 0.867 8 C -0.181 4.181 9 N -0.459 5.459 10 Si 0.817 3.183 11 H -0.182 1.182 12 H -0.189 1.189 13 H -0.181 1.181 14 C 0.093 3.907 15 S -0.728 6.728 16 N -0.292 5.292 17 C 0.098 3.902 18 C -0.197 4.197 19 C -0.085 4.085 20 C -0.255 4.255 21 S 0.083 5.917 22 C -0.301 4.301 23 C -0.105 4.105 24 C -0.188 4.188 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.255 0.745 36 H 0.112 0.888 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.174 0.826 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.197 10.384 -5.850 13.923 hybrid contribution 2.065 0.256 -0.748 2.212 sum -5.131 10.640 -6.598 13.530 Atomic orbital electron populations 1.21704 0.94041 1.02535 1.01753 1.21362 0.97188 0.94282 1.02145 1.21660 0.93025 0.99074 1.00902 1.22301 0.95044 0.81716 1.04793 1.44458 1.34413 1.11651 1.04408 1.20476 1.40945 0.99126 0.88028 0.86743 1.26600 0.91874 0.94910 1.04736 1.69933 1.21770 1.17242 1.36967 0.84905 0.80044 0.79223 0.74120 1.18152 1.18894 1.18090 1.20536 0.96080 0.86554 0.87505 1.92601 1.82631 1.72510 1.25024 1.41068 1.09380 1.00769 1.77988 1.18133 0.88449 0.88887 0.94707 1.20520 0.92313 0.98841 1.08039 1.20510 0.98824 0.90832 0.98314 1.21481 0.97200 0.96383 1.10448 1.85332 1.14869 0.99656 1.91870 1.23740 1.04253 0.95691 1.06432 1.21165 0.90584 1.00149 0.98616 1.20718 1.01266 0.89262 1.07562 0.92291 0.90861 0.93355 0.91198 0.92402 0.93771 0.92123 0.87756 0.90340 0.88926 0.74483 0.88775 0.85328 0.85642 0.88959 0.88879 0.82612 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.11 -3.51 5.93 30.60 0.18 -3.32 16 3 C -0.11 -4.17 5.54 30.59 0.17 -4.00 16 4 C 0.09 3.82 4.83 86.38 0.42 4.23 16 5 N -0.28 -12.89 2.36 -523.27 -1.23 -14.13 16 6 C -0.35 -15.51 8.70 84.03 0.73 -14.78 16 7 H 0.12 5.04 6.75 -2.91 -0.02 5.02 16 8 C 0.03 1.42 4.98 84.90 0.42 1.84 16 9 N -0.83 -36.79 11.56 21.65 0.25 -36.54 16 10 Si 1.00 32.37 29.60 68.60 2.03 34.40 16 11 H -0.26 -8.19 7.11 99.48 0.71 -7.48 16 12 H -0.26 -8.22 7.11 99.48 0.71 -7.51 16 13 H -0.26 -8.23 7.11 99.48 0.71 -7.52 16 14 C 0.45 21.94 5.35 179.05 0.96 22.90 16 15 S -0.86 -47.94 28.79 -56.49 -1.63 -49.57 16 16 N -0.66 -27.66 4.54 -189.81 -0.86 -28.52 16 17 C 0.20 7.62 5.64 38.13 0.21 7.84 16 18 C -0.17 -6.77 9.06 22.38 0.20 -6.57 16 19 C -0.06 -2.06 9.78 22.39 0.22 -1.84 16 20 C -0.14 -4.07 6.11 22.61 0.14 -3.93 16 21 S -0.16 -3.60 22.56 -56.49 -1.27 -4.88 16 22 C -0.13 -1.81 9.15 113.37 1.04 -0.77 16 23 C -0.08 -2.11 9.36 22.39 0.21 -1.90 16 24 C -0.16 -4.88 9.89 22.38 0.22 -4.66 16 25 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.10 4.72 5.68 -2.38 -0.01 4.70 16 33 H 0.08 3.93 6.47 -2.39 -0.02 3.92 16 34 H 0.30 12.09 8.32 -92.71 -0.77 11.32 16 35 H 0.41 15.91 8.82 -92.71 -0.82 15.09 16 36 H 0.09 4.23 6.90 -2.91 -0.02 4.21 16 37 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 38 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.12 7.74 -2.39 -0.02 1.10 16 40 H 0.09 1.11 7.75 -2.39 -0.02 1.09 16 41 H 0.16 2.87 5.87 -2.91 -0.02 2.85 16 42 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -62.72 370.48 3.33 -59.40 By element: Atomic # 1 Polarization: 47.57 SS G_CDS: 0.21 Total: 47.77 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 5.84 Total: -7.93 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -1.85 Total: -79.19 kcal Atomic # 14 Polarization: 32.37 SS G_CDS: 2.03 Total: 34.40 kcal Atomic # 16 Polarization: -51.55 SS G_CDS: -2.90 Total: -54.45 kcal Total: -62.72 3.33 -59.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201181126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.825 kcal (2) G-P(sol) polarization free energy of solvation -62.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds