Wall clock time and date at job start Tue Mar 31 2020 13:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38270 * 119.95445 * 2 1 4 4 C 1.38327 * 120.27238 * 180.29725 * 3 2 1 5 5 C 1.38022 * 120.17332 * 359.44711 * 4 3 2 6 6 C 1.39288 * 119.90806 * 0.54918 * 5 4 3 7 7 C 1.48389 * 120.13760 * 179.70536 * 6 5 4 8 8 N 1.30946 * 126.29529 * 179.71054 * 7 6 5 9 9 O 1.21278 * 110.36945 * 179.79994 * 8 7 6 10 10 C 1.34327 * 109.88455 * 0.46885 * 9 8 7 11 11 C 1.47287 * 126.58633 * 179.70886 * 10 9 8 12 12 C 1.39379 * 120.35492 * 174.33176 * 11 10 9 13 13 C 1.38064 * 119.96190 * 179.97438 * 12 11 10 14 14 C 1.38930 * 120.69714 * 0.02609 * 13 12 11 15 15 C 1.36462 * 120.73027 * 359.97438 * 14 13 12 16 16 C 1.40758 * 120.00694 * 359.69925 * 15 14 13 17 17 C 1.40767 * 120.34483 * 180.28261 * 16 15 14 18 18 H 1.07998 * 120.00137 * 147.41409 * 17 16 15 19 19 C 1.40212 * 120.00038 * 327.41049 * 17 16 15 20 20 N 1.30676 * 120.00121 * 165.96921 * 19 17 16 21 21 Si 1.86801 * 120.00008 * 345.97864 * 19 17 16 22 22 H 1.48501 * 109.47184 * 90.33362 * 21 19 17 23 23 H 1.48500 * 109.47127 * 210.33460 * 21 19 17 24 24 H 1.48493 * 109.47114 * 330.33293 * 21 19 17 25 25 N 1.32215 * 106.82766 * 359.71053 * 10 9 8 26 26 C 1.38268 * 119.95471 * 180.02562 * 2 1 3 27 27 F 1.35103 * 120.09080 * 359.95956 * 26 2 1 28 28 H 1.08994 * 109.47296 * 90.00299 * 1 2 3 29 29 H 1.09007 * 109.46822 * 210.00150 * 1 2 3 30 30 H 1.08995 * 109.47105 * 330.00153 * 1 2 3 31 31 H 1.08005 * 119.86283 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.91282 * 179.72152 * 4 3 2 33 33 H 1.08003 * 120.04654 * 180.27976 * 5 4 3 34 34 H 1.08006 * 120.02300 * 0.02562 * 12 11 10 35 35 H 1.08003 * 119.65146 * 179.97438 * 13 12 11 36 36 H 1.07998 * 119.63630 * 179.97438 * 14 13 12 37 37 H 1.08003 * 119.99649 * 180.02562 * 15 14 13 38 38 H 0.97000 * 120.00644 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1980 0.0000 4 6 3.5807 1.2057 -0.0062 5 6 4.2810 0.0164 -0.0009 6 6 3.5931 -1.1947 -0.0009 7 6 4.3409 -2.4764 -0.0018 8 7 3.8200 -3.6778 0.0034 9 8 4.6952 -4.5174 -0.0031 10 6 5.8994 -3.9221 -0.0031 11 6 7.2104 -4.5933 -0.0039 12 6 8.3828 -3.8489 -0.1226 13 6 9.6074 -4.4864 -0.1219 14 6 9.6875 -5.8684 -0.0042 15 6 8.5579 -6.6248 0.1137 16 6 7.2939 -6.0056 0.1233 17 6 6.1243 -6.7785 0.2505 18 1 5.2643 -6.3760 0.7650 19 6 6.0758 -8.0710 -0.2908 20 7 5.1153 -8.8877 0.0528 21 14 7.3844 -8.6256 -1.5031 22 1 8.5093 -9.2534 -0.7644 23 1 6.7993 -9.6126 -2.4459 24 1 7.8847 -7.4519 -2.2627 25 7 5.6817 -2.6180 -0.0023 26 6 2.1974 -1.1980 -0.0005 27 9 1.5228 -2.3685 -0.0002 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6544 2.1316 0.0004 32 1 4.1140 2.1448 -0.0107 33 1 5.3610 0.0248 -0.0012 34 1 8.3333 -2.7739 -0.2143 35 1 10.5127 -3.9046 -0.2146 36 1 10.6545 -6.3493 -0.0060 37 1 8.6340 -7.6983 0.2049 38 1 5.0819 -9.7820 -0.3214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215611533.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:13 Heat of formation + Delta-G solvation = 61.806623 kcal Electronic energy + Delta-G solvation = -25939.229584 eV Core-core repulsion = 22049.812079 eV Total energy + Delta-G solvation = -3889.417505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.74295 -44.46091 -39.15476 -38.08759 -35.19193 -33.95296 -33.14459 -32.29236 -30.88875 -30.36985 -29.19258 -27.13947 -25.64727 -24.42383 -23.46436 -21.86883 -21.62115 -21.09972 -20.01798 -17.85345 -17.48217 -17.13028 -16.93984 -16.46267 -15.80093 -15.58476 -15.42476 -14.92554 -14.43733 -14.15256 -13.86958 -13.51152 -13.44786 -13.26241 -13.16276 -12.68018 -12.60523 -12.36755 -12.30218 -11.97658 -11.76058 -11.56308 -11.26818 -11.20019 -11.03659 -10.97710 -10.64942 -10.35863 -10.06148 -9.95865 -9.82803 -9.39121 -8.74698 -8.57893 -7.93812 -7.70065 -7.24797 -4.82197 0.76721 1.09266 1.51426 2.43156 2.61054 2.93290 3.00939 3.13996 3.22427 3.69558 3.72868 3.82263 3.91191 4.22915 4.28069 4.46506 4.65225 4.87491 5.01788 5.11698 5.12680 5.37775 5.42461 5.58574 5.68645 5.82582 5.86500 5.88672 5.99578 6.07614 6.15260 6.24107 6.30771 6.39683 6.54206 6.57361 6.69155 6.81158 6.88250 7.02355 7.32945 7.44033 7.56381 7.78060 8.06989 8.27440 8.42012 9.02387 9.73988 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.003589 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.120738 B = 7799.186130 C = 9124.084107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.127 4.127 3 C -0.086 4.086 4 C -0.132 4.132 5 C -0.058 4.058 6 C -0.032 4.032 7 C 0.188 3.812 8 N -0.392 5.392 9 O 0.098 5.902 10 C 0.282 3.718 11 C -0.171 4.171 12 C -0.010 4.010 13 C -0.250 4.250 14 C -0.055 4.055 15 C -0.225 4.225 16 C 0.113 3.887 17 C -0.412 4.412 18 H 0.108 0.892 19 C 0.083 3.917 20 N -0.774 5.774 21 Si 0.916 3.084 22 H -0.263 1.263 23 H -0.285 1.285 24 H -0.241 1.241 25 N -0.518 5.518 26 C 0.125 3.875 27 F -0.118 7.118 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 13.282 -1.282 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.128 4.128 3 C -0.104 4.104 4 C -0.150 4.150 5 C -0.078 4.078 6 C -0.034 4.034 7 C -0.082 4.082 8 N -0.101 5.101 9 O 0.038 5.962 10 C 0.073 3.927 11 C -0.176 4.176 12 C -0.030 4.030 13 C -0.269 4.269 14 C -0.074 4.074 15 C -0.244 4.244 16 C 0.107 3.893 17 C -0.439 4.439 18 H 0.126 0.874 19 C -0.141 4.141 20 N -0.395 5.395 21 Si 0.741 3.259 22 H -0.189 1.189 23 H -0.212 1.212 24 H -0.164 1.164 25 N -0.253 5.253 26 C 0.104 3.896 27 F -0.097 7.097 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.391 13.269 -1.255 13.753 hybrid contribution 0.462 -0.828 -0.408 1.033 sum -2.929 12.441 -1.664 12.889 Atomic orbital electron populations 1.20707 0.89854 1.03386 1.02862 1.19840 0.97158 0.91474 1.04359 1.20998 0.94201 0.96840 0.98399 1.21114 0.94016 0.98099 1.01748 1.21143 1.01159 0.89835 0.95678 1.17476 0.89975 0.90023 1.05947 1.23328 0.88235 0.92687 1.03996 1.74961 1.14311 0.99061 1.21809 1.85659 1.12637 1.32022 1.65857 1.26182 0.89269 0.85341 0.91921 1.17073 0.84581 0.92795 1.23153 1.20702 0.91040 0.98192 0.93033 1.20349 0.96075 0.94236 1.16277 1.20571 0.97135 0.94075 0.95652 1.20882 0.92413 0.99029 1.12105 1.17592 0.93150 0.90294 0.88231 1.19890 0.99730 0.96734 1.27569 0.87436 1.26359 0.96415 0.95111 0.96249 1.69583 1.29304 1.06805 1.33813 0.86264 0.79732 0.79862 0.80075 1.18871 1.21236 1.16363 1.72148 1.11884 1.14689 1.26608 1.17540 0.88586 0.81745 1.01744 1.91568 1.79592 1.45390 1.93114 0.90780 0.91063 0.90896 0.84877 0.84770 0.83785 0.87051 0.87794 0.88081 0.87137 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.83 36.01 0.35 -0.71 16 2 C -0.13 -1.57 5.88 -104.60 -0.62 -2.19 16 3 C -0.09 -0.86 9.69 -39.54 -0.38 -1.24 16 4 C -0.13 -1.39 10.03 -39.63 -0.40 -1.79 16 5 C -0.06 -0.82 9.70 -39.27 -0.38 -1.20 16 6 C -0.03 -0.56 5.88 -104.83 -0.62 -1.17 16 7 C 0.19 4.03 7.78 -156.34 -1.22 2.82 16 8 N -0.39 -9.28 10.85 31.27 0.34 -8.94 16 9 O 0.10 2.43 8.48 16.31 0.14 2.57 16 10 C 0.28 6.63 7.83 -13.92 -0.11 6.52 16 11 C -0.17 -3.93 5.93 -104.34 -0.62 -4.55 16 12 C -0.01 -0.20 9.70 -39.22 -0.38 -0.58 16 13 C -0.25 -4.70 10.03 -39.39 -0.39 -5.09 16 14 C -0.06 -1.06 9.96 -39.97 -0.40 -1.46 16 15 C -0.23 -4.90 7.11 -39.27 -0.28 -5.18 16 16 C 0.11 2.68 5.10 -106.53 -0.54 2.14 16 17 C -0.41 -10.51 8.43 -37.89 -0.32 -10.82 16 18 H 0.11 2.96 6.14 -52.49 -0.32 2.64 16 19 C 0.08 2.01 5.45 -17.30 -0.09 1.91 16 20 N -0.77 -19.24 13.92 55.56 0.77 -18.47 16 21 Si 0.92 19.05 24.51 -169.99 -4.17 14.89 16 22 H -0.26 -5.16 6.55 56.52 0.37 -4.79 16 23 H -0.29 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.24 -5.15 6.94 56.52 0.39 -4.75 16 25 N -0.52 -11.36 10.97 -10.24 -0.11 -11.48 16 26 C 0.13 2.05 7.22 -39.08 -0.28 1.77 16 27 F -0.12 -2.20 15.02 2.25 0.03 -2.16 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.74 7.64 -51.92 -0.40 0.34 16 30 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.14 1.96 7.87 -52.48 -0.41 1.55 16 34 H 0.11 2.09 7.89 -52.48 -0.41 1.67 16 35 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.11 2.33 4.67 -52.48 -0.24 2.09 16 38 H 0.29 6.52 8.29 -40.82 -0.34 6.18 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -27.89 330.81 -8.18 -36.07 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -3.50 Total: 3.37 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -6.67 Total: -20.84 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 1.00 Total: -38.88 kcal Atomic # 8 Polarization: 2.43 SS G_CDS: 0.14 Total: 2.57 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.03 Total: -2.16 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.17 Total: 14.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.89 -8.18 -36.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215611533.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.878 kcal (2) G-P(sol) polarization free energy of solvation -27.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds