Wall clock time and date at job start Tue Mar 31 2020 13:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38270 * 119.95445 * 2 1 4 4 C 1.38327 * 120.27238 * 180.29725 * 3 2 1 5 5 C 1.38022 * 120.17332 * 359.44711 * 4 3 2 6 6 C 1.39288 * 119.90806 * 0.54918 * 5 4 3 7 7 C 1.48389 * 120.13760 * 179.70536 * 6 5 4 8 8 N 1.30946 * 126.29529 * 179.71054 * 7 6 5 9 9 O 1.21278 * 110.36945 * 179.79994 * 8 7 6 10 10 C 1.34327 * 109.88455 * 0.46885 * 9 8 7 11 11 C 1.47287 * 126.58633 * 179.70886 * 10 9 8 12 12 C 1.39379 * 120.35492 * 174.33176 * 11 10 9 13 13 C 1.38064 * 119.96190 * 179.97438 * 12 11 10 14 14 C 1.38930 * 120.69714 * 0.02609 * 13 12 11 15 15 C 1.36462 * 120.73027 * 359.97438 * 14 13 12 16 16 C 1.40758 * 120.00694 * 359.69925 * 15 14 13 17 17 C 1.40767 * 120.34483 * 180.28261 * 16 15 14 18 18 H 1.07998 * 120.00137 * 147.41409 * 17 16 15 19 19 C 1.40212 * 120.00038 * 327.41049 * 17 16 15 20 20 N 1.30676 * 120.00121 * 165.96921 * 19 17 16 21 21 Si 1.86801 * 120.00008 * 345.97864 * 19 17 16 22 22 H 1.48501 * 109.47184 * 90.33362 * 21 19 17 23 23 H 1.48500 * 109.47127 * 210.33460 * 21 19 17 24 24 H 1.48493 * 109.47114 * 330.33293 * 21 19 17 25 25 N 1.32215 * 106.82766 * 359.71053 * 10 9 8 26 26 C 1.38268 * 119.95471 * 180.02562 * 2 1 3 27 27 F 1.35103 * 120.09080 * 359.95956 * 26 2 1 28 28 H 1.08994 * 109.47296 * 90.00299 * 1 2 3 29 29 H 1.09007 * 109.46822 * 210.00150 * 1 2 3 30 30 H 1.08995 * 109.47105 * 330.00153 * 1 2 3 31 31 H 1.08005 * 119.86283 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.91282 * 179.72152 * 4 3 2 33 33 H 1.08003 * 120.04654 * 180.27976 * 5 4 3 34 34 H 1.08006 * 120.02300 * 0.02562 * 12 11 10 35 35 H 1.08003 * 119.65146 * 179.97438 * 13 12 11 36 36 H 1.07998 * 119.63630 * 179.97438 * 14 13 12 37 37 H 1.08003 * 119.99649 * 180.02562 * 15 14 13 38 38 H 0.97000 * 120.00644 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1980 0.0000 4 6 3.5807 1.2057 -0.0062 5 6 4.2810 0.0164 -0.0009 6 6 3.5931 -1.1947 -0.0009 7 6 4.3409 -2.4764 -0.0018 8 7 3.8200 -3.6778 0.0034 9 8 4.6952 -4.5174 -0.0031 10 6 5.8994 -3.9221 -0.0031 11 6 7.2104 -4.5933 -0.0039 12 6 8.3828 -3.8489 -0.1226 13 6 9.6074 -4.4864 -0.1219 14 6 9.6875 -5.8684 -0.0042 15 6 8.5579 -6.6248 0.1137 16 6 7.2939 -6.0056 0.1233 17 6 6.1243 -6.7785 0.2505 18 1 5.2643 -6.3760 0.7650 19 6 6.0758 -8.0710 -0.2908 20 7 5.1153 -8.8877 0.0528 21 14 7.3844 -8.6256 -1.5031 22 1 8.5093 -9.2534 -0.7644 23 1 6.7993 -9.6126 -2.4459 24 1 7.8847 -7.4519 -2.2627 25 7 5.6817 -2.6180 -0.0023 26 6 2.1974 -1.1980 -0.0005 27 9 1.5228 -2.3685 -0.0002 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6544 2.1316 0.0004 32 1 4.1140 2.1448 -0.0107 33 1 5.3610 0.0248 -0.0012 34 1 8.3333 -2.7739 -0.2143 35 1 10.5127 -3.9046 -0.2146 36 1 10.6545 -6.3493 -0.0060 37 1 8.6340 -7.6983 0.2049 38 1 5.0819 -9.7820 -0.3214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215611533.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:12 Heat of formation + Delta-G solvation = 45.741716 kcal Electronic energy + Delta-G solvation = -25939.926210 eV Core-core repulsion = 22049.812079 eV Total energy + Delta-G solvation = -3890.114131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.03577 -46.21080 -40.19186 -39.77851 -36.81785 -35.71217 -34.54508 -33.55218 -32.52034 -31.71243 -30.79529 -28.06361 -27.39342 -25.86140 -25.05765 -23.28603 -23.14971 -22.41180 -21.56153 -19.63730 -18.92498 -18.77171 -18.35215 -17.79220 -17.32454 -16.84702 -16.72715 -16.55665 -15.78247 -15.68341 -15.35581 -14.95890 -14.50224 -14.42742 -14.33335 -14.27076 -14.07636 -13.65393 -13.55002 -13.45093 -13.27150 -12.90381 -12.70103 -12.57480 -12.50080 -12.34012 -12.20943 -12.05151 -11.74691 -11.65831 -11.48589 -11.06050 -9.86248 -9.72791 -9.63185 -9.39190 -9.03719 -6.68394 -0.47927 -0.17335 0.08588 0.76152 1.02399 1.24573 1.38153 1.48214 1.61573 2.01659 2.11762 2.45940 2.53269 2.56257 2.98850 3.17276 3.36843 3.66527 3.79042 4.07176 4.18434 4.22706 4.27826 4.36590 4.45637 4.61164 4.70193 4.72114 4.78310 4.81641 4.88203 4.90917 5.00129 5.13539 5.17053 5.17316 5.29018 5.32397 5.35352 5.68913 5.74080 5.80132 5.88651 6.06122 6.24737 6.52207 6.58838 7.25091 8.02340 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.003589 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.120738 B = 7799.186130 C = 9124.084107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.125 4.125 3 C -0.062 4.062 4 C -0.112 4.112 5 C -0.063 4.063 6 C -0.077 4.077 7 C 0.198 3.802 8 N -0.427 5.427 9 O 0.063 5.937 10 C 0.268 3.732 11 C -0.190 4.190 12 C -0.019 4.019 13 C -0.226 4.226 14 C -0.046 4.046 15 C -0.241 4.241 16 C 0.103 3.897 17 C -0.454 4.454 18 H 0.064 0.936 19 C 0.047 3.953 20 N -0.823 5.823 21 Si 0.969 3.031 22 H -0.236 1.236 23 H -0.277 1.277 24 H -0.249 1.249 25 N -0.514 5.514 26 C 0.091 3.909 27 F -0.144 7.144 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.185 0.815 32 H 0.180 0.820 33 H 0.143 0.857 34 H 0.127 0.873 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.116 0.884 38 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 17.201 -2.048 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.126 4.126 3 C -0.080 4.080 4 C -0.130 4.130 5 C -0.083 4.083 6 C -0.080 4.080 7 C -0.072 4.072 8 N -0.143 5.143 9 O 0.010 5.990 10 C 0.058 3.942 11 C -0.195 4.195 12 C -0.038 4.038 13 C -0.245 4.245 14 C -0.064 4.064 15 C -0.260 4.260 16 C 0.098 3.902 17 C -0.482 4.482 18 H 0.082 0.918 19 C -0.172 4.172 20 N -0.446 5.446 21 Si 0.790 3.210 22 H -0.160 1.160 23 H -0.204 1.204 24 H -0.173 1.173 25 N -0.250 5.250 26 C 0.070 3.930 27 F -0.123 7.123 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.202 0.798 32 H 0.197 0.803 33 H 0.161 0.839 34 H 0.145 0.855 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.134 0.866 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.891 17.155 -2.005 17.295 hybrid contribution -0.256 -1.638 -0.129 1.663 sum -1.146 15.517 -2.134 15.705 Atomic orbital electron populations 1.20811 0.87884 1.04285 1.03825 1.20283 0.98679 0.90665 1.02932 1.21625 0.94202 0.97582 0.94619 1.21624 0.94462 0.98170 0.98745 1.21320 1.01344 0.89863 0.95765 1.17781 0.90651 0.89362 1.10164 1.24166 0.88307 0.93726 1.01049 1.74942 1.14655 0.99994 1.24671 1.85644 1.13295 1.32967 1.67057 1.26641 0.89510 0.86063 0.91975 1.17496 0.85325 0.93096 1.23589 1.20995 0.90755 0.99051 0.93039 1.20923 0.96772 0.94519 1.12238 1.21092 0.98119 0.94279 0.92944 1.21049 0.92228 0.99777 1.12953 1.17787 0.93704 0.90693 0.88029 1.19765 0.99617 0.98297 1.30546 0.91753 1.27106 0.98273 0.94584 0.97191 1.69620 1.31417 1.07675 1.35935 0.85483 0.78152 0.79274 0.78131 1.15973 1.20366 1.17272 1.72130 1.12243 1.13771 1.26807 1.18058 0.88544 0.82422 1.03993 1.91494 1.79976 1.47201 1.93630 0.89696 0.92771 0.87401 0.79802 0.80263 0.83895 0.85481 0.83365 0.83514 0.86617 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.83 71.24 0.70 -1.18 16 2 C -0.12 -2.83 5.88 -19.85 -0.12 -2.95 16 3 C -0.06 -0.95 9.69 22.30 0.22 -0.73 16 4 C -0.11 -1.88 10.03 22.24 0.22 -1.65 16 5 C -0.06 -1.69 9.70 22.47 0.22 -1.47 16 6 C -0.08 -2.80 5.88 -20.00 -0.12 -2.91 16 7 C 0.20 9.13 7.78 137.36 1.07 10.20 16 8 N -0.43 -22.31 10.85 -57.33 -0.62 -22.93 16 9 O 0.06 3.47 8.48 68.44 0.58 4.05 16 10 C 0.27 13.49 7.83 87.09 0.68 14.17 16 11 C -0.19 -9.04 5.93 -19.68 -0.12 -9.15 16 12 C -0.02 -0.73 9.70 22.50 0.22 -0.52 16 13 C -0.23 -7.52 10.03 22.39 0.22 -7.29 16 14 C -0.05 -1.57 9.96 22.02 0.22 -1.35 16 15 C -0.24 -10.20 7.11 22.47 0.16 -10.04 16 16 C 0.10 5.08 5.10 -21.10 -0.11 4.97 16 17 C -0.45 -25.16 8.43 23.37 0.20 -24.97 16 18 H 0.06 4.01 6.14 -2.91 -0.02 4.00 16 19 C 0.05 2.44 5.45 85.34 0.46 2.90 16 20 N -0.82 -44.09 13.92 21.87 0.30 -43.78 16 21 Si 0.97 39.76 24.51 68.60 1.68 41.44 16 22 H -0.24 -8.55 6.55 99.48 0.65 -7.90 16 23 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.25 -10.43 6.94 99.48 0.69 -9.74 16 25 N -0.51 -23.74 10.97 -301.99 -3.31 -27.05 16 26 C 0.09 3.08 7.22 22.60 0.16 3.24 16 27 F -0.14 -5.83 15.02 44.97 0.68 -5.16 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.11 7.64 -2.38 -0.02 1.09 16 30 H 0.11 1.06 8.08 -2.39 -0.02 1.04 16 31 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 32 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.14 3.76 7.87 -2.91 -0.02 3.73 16 34 H 0.13 4.53 7.89 -2.91 -0.02 4.51 16 35 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 36 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 37 H 0.12 4.72 4.67 -2.91 -0.01 4.71 16 38 H 0.30 14.30 8.29 -92.71 -0.77 13.53 16 Total: -1.00 -70.80 330.81 4.66 -66.14 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.05 Total: 16.03 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 4.30 Total: -28.73 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -3.63 Total: -93.77 kcal Atomic # 8 Polarization: 3.47 SS G_CDS: 0.58 Total: 4.05 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.68 Total: -5.16 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.68 Total: 41.44 kcal Total: -70.80 4.66 -66.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215611533.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.883 kcal (2) G-P(sol) polarization free energy of solvation -70.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds