Wall clock time and date at job start Tue Mar 31 2020 13:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38271 * 120.07535 * 2 1 4 4 F 1.35097 * 119.96707 * 0.02562 * 3 2 1 5 5 C 1.38518 * 120.06686 * 180.27813 * 3 2 1 6 6 C 1.38305 * 120.21342 * 359.76174 * 5 3 2 7 7 C 1.38012 * 120.14385 * 359.97438 * 6 5 3 8 8 C 1.39261 * 120.07035 * 179.76466 * 2 1 3 9 9 C 1.48449 * 120.10768 * 359.97438 * 8 2 1 10 10 N 1.30838 * 126.31865 * 359.68121 * 9 8 2 11 11 O 1.21270 * 110.33001 * 180.02562 * 10 9 8 12 12 C 1.34193 * 109.92022 * 0.02562 * 11 10 9 13 13 C 1.47872 * 126.56330 * 180.02562 * 12 11 10 14 14 C 1.39920 * 120.02524 * 179.69458 * 13 12 11 15 15 C 1.38335 * 120.36012 * 179.78602 * 14 13 12 16 16 C 1.37759 * 120.40422 * 0.47843 * 15 14 13 17 17 C 1.40761 * 120.03781 * 359.78320 * 16 15 14 18 18 C 1.41428 * 120.17532 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00016 * 155.19468 * 18 17 16 20 20 C 1.39934 * 120.00014 * 335.19260 * 18 17 16 21 21 N 1.30833 * 119.99952 * 342.19148 * 20 18 17 22 22 Si 1.86804 * 120.00213 * 162.19150 * 20 18 17 23 23 H 1.48502 * 109.46933 * 94.65597 * 22 20 18 24 24 H 1.48498 * 109.47217 * 214.65880 * 22 20 18 25 25 H 1.48501 * 109.46617 * 334.66144 * 22 20 18 26 26 C 1.38988 * 120.01992 * 359.97438 * 13 12 11 27 27 N 1.31958 * 106.87482 * 359.97438 * 12 11 10 28 28 H 1.09007 * 109.47094 * 270.23731 * 1 2 3 29 29 H 1.09005 * 109.46998 * 30.23151 * 1 2 3 30 30 H 1.08994 * 109.47340 * 150.23845 * 1 2 3 31 31 H 1.08003 * 119.89112 * 179.74477 * 5 3 2 32 32 H 1.07999 * 119.92815 * 179.97438 * 6 5 3 33 33 H 1.08004 * 120.03242 * 180.02562 * 7 6 5 34 34 H 1.07999 * 119.82071 * 0.03327 * 14 13 12 35 35 H 1.07997 * 119.79849 * 180.24011 * 15 14 13 36 36 H 1.07996 * 119.97639 * 179.76693 * 16 15 14 37 37 H 0.97000 * 119.99927 * 179.97438 * 21 20 18 38 38 H 1.07990 * 120.20055 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1966 0.0000 4 9 1.5253 2.3670 0.0005 5 6 3.5851 1.1964 -0.0058 6 6 4.2809 0.0011 -0.0067 7 6 3.5982 -1.1983 -0.0012 8 6 2.2048 -1.2052 0.0050 9 6 1.4665 -2.4931 0.0108 10 7 0.1666 -2.6411 0.0178 11 8 -0.1234 -3.8186 0.0217 12 6 0.9923 -4.5642 0.0180 13 6 1.0648 -6.0412 0.0202 14 6 2.3091 -6.6811 0.0093 15 6 2.3850 -8.0623 0.0158 16 6 1.2369 -8.8237 0.0232 17 6 -0.0238 -8.1975 0.0287 18 6 -1.2043 -8.9763 0.0357 19 1 -2.1206 -8.5644 0.4322 20 6 -1.1852 -10.2805 -0.4711 21 7 -0.2096 -10.6637 -1.2541 22 14 -2.5525 -11.4743 -0.0298 23 1 -3.5928 -11.4489 -1.0893 24 1 -1.9947 -12.8458 0.0836 25 1 -3.1570 -11.0768 1.2671 26 6 -0.1031 -6.7947 0.0273 27 7 2.0124 -3.7272 0.0108 28 1 -0.3634 0.0043 1.0277 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3634 -0.8921 -0.5101 31 1 4.1235 2.1326 -0.0100 32 1 5.3609 0.0063 -0.0116 33 1 4.1434 -2.1306 -0.0015 34 1 3.2151 -6.0935 -0.0002 35 1 3.3502 -8.5468 0.0112 36 1 1.3042 -9.9015 0.0244 37 1 -0.1961 -11.5679 -1.6052 38 1 -1.0655 -6.3049 0.0316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216540392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:16 Heat of formation + Delta-G solvation = 65.323514 kcal Electronic energy + Delta-G solvation = -25118.335759 eV Core-core repulsion = 21229.070758 eV Total energy + Delta-G solvation = -3889.265001 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.11133 -45.07986 -39.43697 -37.80772 -35.50915 -34.19775 -33.45922 -32.07743 -30.69551 -30.11821 -29.17740 -27.33215 -25.56251 -24.66076 -23.67202 -22.18100 -21.83712 -20.73772 -20.34959 -18.28507 -17.71301 -17.42006 -16.84646 -16.31259 -15.92241 -15.89891 -15.56643 -14.94953 -14.77812 -14.33464 -13.79839 -13.62905 -13.52184 -13.39184 -13.01528 -12.90775 -12.51732 -12.40499 -12.05667 -11.96941 -11.63149 -11.59082 -11.39950 -11.37982 -11.22531 -10.94221 -10.73133 -10.57964 -10.17822 -10.04094 -9.70726 -9.31063 -8.91433 -8.82547 -7.78098 -7.59107 -6.94593 -4.56058 0.49854 0.92041 1.23221 2.34941 2.60976 2.97703 3.00189 3.05099 3.16152 3.18183 3.47856 3.49530 3.81958 4.03542 4.22825 4.43311 4.57003 4.57872 4.79000 5.03900 5.19492 5.40153 5.43231 5.45999 5.59416 5.72728 5.85181 5.92172 6.00242 6.07166 6.09511 6.22476 6.23819 6.33561 6.60918 6.66070 6.76743 6.88263 7.03526 7.17081 7.48206 7.69752 7.77431 7.95139 8.36137 8.45735 8.64737 8.67947 10.01062 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.030122 B = 0.002419 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.325252 B =11574.444871 C =12413.864353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C 0.090 3.910 4 F -0.136 7.136 5 C -0.136 4.136 6 C -0.102 4.102 7 C -0.082 4.082 8 C 0.013 3.987 9 C 0.205 3.795 10 N -0.385 5.385 11 O 0.073 5.927 12 C 0.274 3.726 13 C -0.028 4.028 14 C -0.175 4.175 15 C -0.111 4.111 16 C -0.131 4.131 17 C 0.102 3.898 18 C -0.459 4.459 19 H 0.083 0.917 20 C 0.076 3.924 21 N -0.791 5.791 22 Si 0.910 3.090 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.177 4.177 27 N -0.489 5.489 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.284 0.716 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.692 14.145 1.700 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C 0.071 3.929 4 F -0.114 7.114 5 C -0.156 4.156 6 C -0.120 4.120 7 C -0.102 4.102 8 C 0.011 3.989 9 C -0.065 4.065 10 N -0.096 5.096 11 O 0.016 5.984 12 C 0.060 3.940 13 C -0.030 4.030 14 C -0.196 4.196 15 C -0.130 4.130 16 C -0.151 4.151 17 C 0.100 3.900 18 C -0.488 4.488 19 H 0.101 0.899 20 C -0.143 4.143 21 N -0.416 5.416 22 Si 0.734 3.266 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.199 4.199 27 N -0.222 5.222 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.143 0.857 37 H 0.095 0.905 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.588 14.764 1.549 15.862 hybrid contribution -0.697 -0.476 0.039 0.845 sum 4.891 14.287 1.588 15.184 Atomic orbital electron populations 1.21112 0.89238 1.04634 1.03576 1.19962 0.97719 0.90728 1.00368 1.17275 0.89924 0.80671 1.05031 1.91486 1.80455 1.45468 1.94040 1.21267 0.92033 1.00116 1.02167 1.20943 1.00510 0.90867 0.99636 1.21336 0.92360 0.99527 0.96939 1.17060 0.92247 0.86611 1.03001 1.23586 0.87323 0.93370 1.02174 1.74844 1.15955 0.96241 1.22582 1.85378 1.35256 1.11626 1.66131 1.26975 0.78926 0.96480 0.91648 1.17045 0.95992 0.80558 1.09438 1.20394 0.94386 0.94255 1.10609 1.20661 0.97751 0.92899 1.01673 1.21629 0.91416 1.00189 1.01886 1.17482 0.93541 0.90123 0.88873 1.19578 0.96607 0.97020 1.35555 0.89934 1.25922 0.96989 0.98919 0.92422 1.69787 1.30726 1.19464 1.21651 0.86261 0.80886 0.79178 0.80281 1.19446 1.19935 1.18271 1.21160 0.94981 0.94213 1.09525 1.72226 1.28735 0.97959 1.23281 0.90451 0.91277 0.88081 0.84368 0.84209 0.83766 0.87572 0.88067 0.85711 0.90541 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.00 36.01 0.32 -1.35 16 2 C -0.08 -1.14 5.91 -104.23 -0.62 -1.75 16 3 C 0.09 1.06 7.24 -39.47 -0.29 0.78 16 4 F -0.14 -1.62 16.48 2.25 0.04 -1.58 16 5 C -0.14 -1.30 10.02 -39.45 -0.40 -1.69 16 6 C -0.10 -0.94 10.03 -39.64 -0.40 -1.34 16 7 C -0.08 -0.99 9.70 -39.25 -0.38 -1.37 16 8 C 0.01 0.18 5.88 -104.90 -0.62 -0.43 16 9 C 0.21 3.56 7.66 -156.29 -1.20 2.36 16 10 N -0.38 -6.87 8.70 31.20 0.27 -6.60 16 11 O 0.07 1.39 11.10 16.67 0.19 1.57 16 12 C 0.27 5.41 8.00 -13.79 -0.11 5.30 16 13 C -0.03 -0.59 5.87 -105.05 -0.62 -1.20 16 14 C -0.18 -3.62 9.71 -38.92 -0.38 -4.00 16 15 C -0.11 -2.33 10.01 -39.72 -0.40 -2.73 16 16 C -0.13 -3.06 8.69 -38.80 -0.34 -3.40 16 17 C 0.10 2.48 5.57 -106.87 -0.59 1.88 16 18 C -0.46 -11.14 9.05 -37.73 -0.34 -11.48 16 19 H 0.08 1.93 7.91 -52.48 -0.41 1.51 16 20 C 0.08 1.76 5.13 -17.34 -0.09 1.67 16 21 N -0.79 -18.86 10.97 55.55 0.61 -18.25 16 22 Si 0.91 17.35 29.60 -169.99 -5.03 12.32 16 23 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 24 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 25 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 26 C -0.18 -3.98 9.47 -38.45 -0.36 -4.34 16 27 N -0.49 -9.17 10.93 -10.22 -0.11 -9.29 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.79 7.65 -51.93 -0.40 0.39 16 30 H 0.10 1.47 5.19 -51.93 -0.27 1.20 16 31 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.14 1.71 7.87 -52.48 -0.41 1.29 16 34 H 0.11 2.03 7.86 -52.49 -0.41 1.62 16 35 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.13 2.99 6.17 -52.49 -0.32 2.66 16 37 H 0.28 6.14 8.30 -40.82 -0.34 5.80 16 38 H 0.11 2.28 7.93 -52.49 -0.42 1.86 16 LS Contribution 337.19 15.07 5.08 5.08 Total: -1.00 -25.30 337.19 -9.22 -34.52 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.47 Total: 5.32 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -6.79 Total: -23.10 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.77 Total: -34.14 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.19 Total: 1.57 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -25.30 -9.22 -34.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216540392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.845 kcal (2) G-P(sol) polarization free energy of solvation -25.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds