Wall clock time and date at job start Tue Mar 31 2020 13:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38271 * 120.07535 * 2 1 4 4 F 1.35097 * 119.96707 * 0.02562 * 3 2 1 5 5 C 1.38518 * 120.06686 * 180.27813 * 3 2 1 6 6 C 1.38305 * 120.21342 * 359.76174 * 5 3 2 7 7 C 1.38012 * 120.14385 * 359.97438 * 6 5 3 8 8 C 1.39261 * 120.07035 * 179.76466 * 2 1 3 9 9 C 1.48449 * 120.10768 * 359.97438 * 8 2 1 10 10 N 1.30838 * 126.31865 * 359.68121 * 9 8 2 11 11 O 1.21270 * 110.33001 * 180.02562 * 10 9 8 12 12 C 1.34193 * 109.92022 * 0.02562 * 11 10 9 13 13 C 1.47872 * 126.56330 * 180.02562 * 12 11 10 14 14 C 1.39920 * 120.02524 * 179.69458 * 13 12 11 15 15 C 1.38335 * 120.36012 * 179.78602 * 14 13 12 16 16 C 1.37759 * 120.40422 * 0.47843 * 15 14 13 17 17 C 1.40761 * 120.03781 * 359.78320 * 16 15 14 18 18 C 1.41428 * 120.17532 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00016 * 155.19468 * 18 17 16 20 20 C 1.39934 * 120.00014 * 335.19260 * 18 17 16 21 21 N 1.30833 * 119.99952 * 342.19148 * 20 18 17 22 22 Si 1.86804 * 120.00213 * 162.19150 * 20 18 17 23 23 H 1.48502 * 109.46933 * 94.65597 * 22 20 18 24 24 H 1.48498 * 109.47217 * 214.65880 * 22 20 18 25 25 H 1.48501 * 109.46617 * 334.66144 * 22 20 18 26 26 C 1.38988 * 120.01992 * 359.97438 * 13 12 11 27 27 N 1.31958 * 106.87482 * 359.97438 * 12 11 10 28 28 H 1.09007 * 109.47094 * 270.23731 * 1 2 3 29 29 H 1.09005 * 109.46998 * 30.23151 * 1 2 3 30 30 H 1.08994 * 109.47340 * 150.23845 * 1 2 3 31 31 H 1.08003 * 119.89112 * 179.74477 * 5 3 2 32 32 H 1.07999 * 119.92815 * 179.97438 * 6 5 3 33 33 H 1.08004 * 120.03242 * 180.02562 * 7 6 5 34 34 H 1.07999 * 119.82071 * 0.03327 * 14 13 12 35 35 H 1.07997 * 119.79849 * 180.24011 * 15 14 13 36 36 H 1.07996 * 119.97639 * 179.76693 * 16 15 14 37 37 H 0.97000 * 119.99927 * 179.97438 * 21 20 18 38 38 H 1.07990 * 120.20055 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1966 0.0000 4 9 1.5253 2.3670 0.0005 5 6 3.5851 1.1964 -0.0058 6 6 4.2809 0.0011 -0.0067 7 6 3.5982 -1.1983 -0.0012 8 6 2.2048 -1.2052 0.0050 9 6 1.4665 -2.4931 0.0108 10 7 0.1666 -2.6411 0.0178 11 8 -0.1234 -3.8186 0.0217 12 6 0.9923 -4.5642 0.0180 13 6 1.0648 -6.0412 0.0202 14 6 2.3091 -6.6811 0.0093 15 6 2.3850 -8.0623 0.0158 16 6 1.2369 -8.8237 0.0232 17 6 -0.0238 -8.1975 0.0287 18 6 -1.2043 -8.9763 0.0357 19 1 -2.1206 -8.5644 0.4322 20 6 -1.1852 -10.2805 -0.4711 21 7 -0.2096 -10.6637 -1.2541 22 14 -2.5525 -11.4743 -0.0298 23 1 -3.5928 -11.4489 -1.0893 24 1 -1.9947 -12.8458 0.0836 25 1 -3.1570 -11.0768 1.2671 26 6 -0.1031 -6.7947 0.0273 27 7 2.0124 -3.7272 0.0108 28 1 -0.3634 0.0043 1.0277 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3634 -0.8921 -0.5101 31 1 4.1235 2.1326 -0.0100 32 1 5.3609 0.0063 -0.0116 33 1 4.1434 -2.1306 -0.0015 34 1 3.2151 -6.0935 -0.0002 35 1 3.3502 -8.5468 0.0112 36 1 1.3042 -9.9015 0.0244 37 1 -0.1961 -11.5679 -1.6052 38 1 -1.0655 -6.3049 0.0316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216540392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:15 Heat of formation + Delta-G solvation = 55.033352 kcal Electronic energy + Delta-G solvation = -25118.781974 eV Core-core repulsion = 21229.070758 eV Total energy + Delta-G solvation = -3889.711216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.00638 -46.51662 -40.36974 -39.52616 -36.90684 -35.81303 -34.70205 -33.36641 -31.93311 -31.66464 -30.75856 -28.29575 -27.30542 -25.92737 -25.13542 -23.44036 -22.92255 -22.41590 -21.72113 -19.73855 -19.16255 -18.73219 -18.01189 -17.56111 -17.18185 -16.80613 -16.78365 -16.48381 -16.24421 -15.71076 -15.28108 -14.67111 -14.66216 -14.54257 -14.28642 -14.21650 -14.04893 -13.76178 -13.49095 -13.20033 -13.08405 -12.86311 -12.75809 -12.71427 -12.57919 -12.28750 -12.23138 -12.00685 -11.78551 -11.58436 -11.42637 -11.01204 -9.91877 -9.75527 -9.52567 -9.29582 -8.67661 -6.38888 -0.60859 -0.24068 0.03780 0.90953 1.00581 1.42249 1.45126 1.55450 1.61527 1.66666 2.21951 2.27374 2.50475 2.69874 2.83264 3.18611 3.57897 3.62630 3.73539 3.83230 3.98969 4.21625 4.34271 4.38422 4.52581 4.53485 4.58117 4.61580 4.71109 4.87239 4.94474 5.00369 5.02100 5.13770 5.16852 5.24981 5.28921 5.30461 5.43629 5.73932 5.77001 5.95645 5.99641 6.19770 6.57129 6.86534 6.88320 6.99501 8.30468 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.030122 B = 0.002419 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.325252 B =11574.444871 C =12413.864353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.098 4.098 3 C 0.080 3.920 4 F -0.138 7.138 5 C -0.117 4.117 6 C -0.086 4.086 7 C -0.084 4.084 8 C -0.021 4.021 9 C 0.211 3.789 10 N -0.390 5.390 11 O 0.061 5.939 12 C 0.262 3.738 13 C -0.027 4.027 14 C -0.171 4.171 15 C -0.106 4.106 16 C -0.152 4.152 17 C 0.078 3.922 18 C -0.493 4.493 19 H 0.080 0.920 20 C 0.040 3.960 21 N -0.820 5.820 22 Si 0.979 3.021 23 H -0.265 1.265 24 H -0.265 1.265 25 H -0.259 1.259 26 C -0.191 4.191 27 N -0.488 5.488 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.181 0.819 33 H 0.145 0.855 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.291 0.709 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.667 15.828 1.852 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.101 4.101 3 C 0.061 3.939 4 F -0.117 7.117 5 C -0.136 4.136 6 C -0.103 4.103 7 C -0.104 4.104 8 C -0.023 4.023 9 C -0.059 4.059 10 N -0.103 5.103 11 O 0.007 5.993 12 C 0.047 3.953 13 C -0.030 4.030 14 C -0.192 4.192 15 C -0.124 4.124 16 C -0.172 4.172 17 C 0.075 3.925 18 C -0.522 4.522 19 H 0.098 0.902 20 C -0.176 4.176 21 N -0.446 5.446 22 Si 0.800 3.200 23 H -0.190 1.190 24 H -0.189 1.189 25 H -0.183 1.183 26 C -0.212 4.212 27 N -0.221 5.221 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.192 0.808 32 H 0.198 0.802 33 H 0.162 0.838 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.132 0.868 37 H 0.102 0.898 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.557 16.445 1.700 18.178 hybrid contribution -1.160 -0.746 -0.023 1.380 sum 6.397 15.699 1.677 17.035 Atomic orbital electron populations 1.21047 0.89708 1.04187 1.03407 1.20012 0.97709 0.91249 1.01095 1.17439 0.90924 0.79982 1.05546 1.91484 1.80730 1.45334 1.94111 1.21713 0.90968 1.01782 0.99183 1.21368 1.02341 0.89383 0.97256 1.21510 0.91319 1.00959 0.96656 1.17216 0.93319 0.85500 1.06227 1.24152 0.87170 0.94072 1.00473 1.74906 1.16522 0.95479 1.23414 1.85379 1.35303 1.12122 1.66471 1.26765 0.79612 0.96147 0.92780 1.17145 0.95877 0.81458 1.08498 1.20653 0.94818 0.94347 1.09398 1.20948 0.98309 0.93030 1.00142 1.21626 0.92057 0.99930 1.03568 1.17791 0.94195 0.90967 0.89511 1.19815 0.96786 0.98449 1.37188 0.90233 1.26680 0.99285 0.99908 0.91755 1.69822 1.32286 1.20250 1.22211 0.85223 0.77902 0.77073 0.79773 1.19028 1.18929 1.18316 1.21221 0.95728 0.93950 1.10328 1.72199 1.28485 0.98434 1.22991 0.90550 0.90070 0.90001 0.80834 0.80170 0.83768 0.85640 0.85082 0.86797 0.89786 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.00 71.24 0.64 -2.64 16 2 C -0.10 -2.51 5.91 -19.61 -0.12 -2.63 16 3 C 0.08 1.69 7.24 22.34 0.16 1.85 16 4 F -0.14 -2.97 16.48 44.97 0.74 -2.23 16 5 C -0.12 -1.72 10.02 22.35 0.22 -1.50 16 6 C -0.09 -1.22 10.03 22.23 0.22 -0.99 16 7 C -0.08 -1.83 9.70 22.48 0.22 -1.61 16 8 C -0.02 -0.58 5.88 -20.04 -0.12 -0.70 16 9 C 0.21 7.32 7.66 137.37 1.05 8.38 16 10 N -0.39 -14.25 8.70 -57.78 -0.50 -14.75 16 11 O 0.06 2.39 11.10 69.74 0.77 3.16 16 12 C 0.26 10.51 8.00 87.31 0.70 11.20 16 13 C -0.03 -1.17 5.87 -20.14 -0.12 -1.29 16 14 C -0.17 -6.98 9.71 22.70 0.22 -6.76 16 15 C -0.11 -4.40 10.01 22.18 0.22 -4.18 16 16 C -0.15 -7.25 8.69 22.77 0.20 -7.05 16 17 C 0.08 3.91 5.57 -21.32 -0.12 3.79 16 18 C -0.49 -24.93 9.05 23.47 0.21 -24.71 16 19 H 0.08 3.89 7.91 -2.91 -0.02 3.87 16 20 C 0.04 1.87 5.13 85.25 0.44 2.30 16 21 N -0.82 -39.91 10.97 21.82 0.24 -39.67 16 22 Si 0.98 35.98 29.60 68.60 2.03 38.01 16 23 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 24 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 25 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 26 C -0.19 -8.91 9.47 23.00 0.22 -8.69 16 27 N -0.49 -18.18 10.93 -302.32 -3.31 -21.48 16 28 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.08 1.82 7.65 -2.38 -0.02 1.81 16 30 H 0.08 2.45 5.19 -2.39 -0.01 2.43 16 31 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.14 3.09 7.87 -2.91 -0.02 3.07 16 34 H 0.13 4.60 7.86 -2.91 -0.02 4.58 16 35 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 36 H 0.11 5.63 6.17 -2.91 -0.02 5.61 16 37 H 0.29 12.76 8.30 -92.71 -0.77 11.99 16 38 H 0.11 4.87 7.93 -2.92 -0.02 4.85 16 Total: -1.00 -56.50 337.19 5.35 -51.15 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 1.12 Total: 21.06 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 4.26 Total: -35.24 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -3.57 Total: -75.90 kcal Atomic # 8 Polarization: 2.39 SS G_CDS: 0.77 Total: 3.16 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.74 Total: -2.23 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.01 kcal Total: -56.50 5.35 -51.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216540392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.182 kcal (2) G-P(sol) polarization free energy of solvation -56.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds