Wall clock time and date at job start Tue Mar 31 2020 13:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38275 * 120.07493 * 2 1 4 4 F 1.35101 * 119.96754 * 0.02562 * 3 2 1 5 5 C 1.38521 * 120.06929 * 180.25587 * 3 2 1 6 6 C 1.38300 * 120.21064 * 359.78197 * 5 3 2 7 7 C 1.38014 * 120.14702 * 359.97438 * 6 5 3 8 8 C 1.39271 * 120.07428 * 179.78833 * 2 1 3 9 9 C 1.48444 * 120.10396 * 359.97438 * 8 2 1 10 10 N 1.30916 * 126.29530 * 359.70432 * 9 8 2 11 11 O 1.21280 * 110.36157 * 179.72334 * 10 9 8 12 12 C 1.34300 * 109.88421 * 0.46901 * 11 10 9 13 13 C 1.47447 * 126.58496 * 179.80189 * 12 11 10 14 14 C 1.40127 * 119.90033 * 359.68698 * 13 12 11 15 15 C 1.36202 * 120.10138 * 179.97438 * 14 13 12 16 16 C 1.40960 * 119.90019 * 0.02562 * 15 14 13 17 17 C 1.40966 * 120.09901 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00261 * 334.82916 * 17 16 15 19 19 C 1.40158 * 119.99647 * 155.10991 * 17 16 15 20 20 N 1.30696 * 120.00098 * 341.76665 * 19 17 16 21 21 Si 1.86799 * 119.99719 * 161.77371 * 19 17 16 22 22 H 1.48500 * 109.47198 * 94.52461 * 21 19 17 23 23 H 1.48501 * 109.47058 * 214.51850 * 21 19 17 24 24 H 1.48490 * 109.47256 * 334.52076 * 21 19 17 25 25 C 1.40971 * 119.80069 * 0.25517 * 16 15 14 26 26 C 1.36208 * 119.89455 * 359.46557 * 25 16 15 27 27 N 1.32165 * 106.83352 * 359.53587 * 12 11 10 28 28 H 1.08999 * 109.47104 * 270.21467 * 1 2 3 29 29 H 1.08997 * 109.46976 * 30.21219 * 1 2 3 30 30 H 1.08996 * 109.46677 * 150.21342 * 1 2 3 31 31 H 1.07991 * 119.89773 * 179.76788 * 5 3 2 32 32 H 1.08000 * 119.92660 * 179.97438 * 6 5 3 33 33 H 1.08007 * 120.03597 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.94682 * 359.97438 * 14 13 12 35 35 H 1.08001 * 120.05073 * 180.02562 * 15 14 13 36 36 H 0.97001 * 120.00404 * 180.02562 * 20 19 17 37 37 H 1.08000 * 120.05253 * 179.72134 * 25 16 15 38 38 H 1.07995 * 119.95298 * 180.29565 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1966 0.0000 4 9 1.5253 2.3671 0.0005 5 6 3.5851 1.1965 -0.0054 6 6 4.2809 0.0012 -0.0062 7 6 3.5982 -1.1982 -0.0011 8 6 2.2049 -1.2052 0.0045 9 6 1.4667 -2.4931 0.0098 10 7 0.1659 -2.6406 0.0163 11 8 -0.1252 -3.8180 0.0138 12 6 0.9911 -4.5646 0.0156 13 6 1.0634 -6.0373 0.0177 14 6 -0.1156 -6.7945 0.0246 15 6 -0.0536 -8.1551 0.0261 16 6 1.1991 -8.8014 0.0211 17 6 1.2682 -10.2094 0.0231 18 1 0.4511 -10.7896 0.4258 19 6 2.3998 -10.8562 -0.4922 20 7 3.2172 -10.2122 -1.2829 21 14 2.7395 -12.6387 -0.0490 22 1 2.1790 -13.5256 -1.1000 23 1 4.2056 -12.8535 0.0497 24 1 2.1041 -12.9542 1.2555 25 6 2.3826 -8.0355 0.0201 26 6 2.3110 -6.6754 0.0129 27 7 2.0125 -3.7258 0.0091 28 1 -0.3633 0.0039 1.0276 29 1 -0.3633 0.8881 -0.5171 30 1 -0.3632 -0.8919 -0.5105 31 1 4.1235 2.1326 -0.0091 32 1 5.3609 0.0065 -0.0108 33 1 4.1434 -2.1306 -0.0013 34 1 -1.0749 -6.2985 0.0289 35 1 -0.9628 -8.7380 0.0310 36 1 4.0002 -10.6599 -1.6399 37 1 3.3446 -8.5265 0.0208 38 1 3.2171 -6.0877 0.0073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216639352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:19 Heat of formation + Delta-G solvation = 60.570672 kcal Electronic energy + Delta-G solvation = -25074.531420 eV Core-core repulsion = 21185.060320 eV Total energy + Delta-G solvation = -3889.471100 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.03457 -44.70985 -39.31802 -37.87399 -35.21508 -34.37494 -33.38602 -31.90465 -30.56081 -29.90510 -29.48752 -27.24289 -26.06287 -24.48460 -23.04095 -22.07319 -21.68876 -20.76757 -20.25937 -17.91872 -17.69878 -17.40688 -16.69820 -16.57949 -15.84019 -15.81858 -15.59772 -15.18699 -14.49267 -14.15855 -13.73654 -13.52562 -13.48146 -13.30037 -12.92055 -12.78051 -12.34352 -12.27636 -12.18376 -11.87456 -11.70883 -11.41828 -11.35132 -11.31686 -11.25983 -11.15908 -10.88943 -10.36565 -10.08210 -10.00272 -9.70398 -9.42020 -8.80300 -8.70122 -7.89637 -7.60659 -7.22486 -4.76799 0.63666 1.01699 1.45616 2.46546 2.76710 2.85623 2.89297 2.91104 3.21465 3.51093 3.60859 3.62459 3.72219 4.16824 4.28961 4.43611 4.67230 4.73267 4.91520 5.15403 5.35659 5.38230 5.54932 5.61805 5.69104 5.85127 5.95479 6.01407 6.08453 6.10074 6.27777 6.30533 6.42654 6.55795 6.62165 6.68727 6.73661 6.84576 6.96919 7.26399 7.47096 7.65804 7.72625 7.85763 8.21047 8.41780 8.53886 8.77790 9.67886 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.029815 B = 0.002369 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.885183 B =11815.062301 C =12667.382302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C 0.089 3.911 4 F -0.137 7.137 5 C -0.139 4.139 6 C -0.102 4.102 7 C -0.083 4.083 8 C 0.017 3.983 9 C 0.208 3.792 10 N -0.400 5.400 11 O 0.049 5.951 12 C 0.288 3.712 13 C -0.202 4.202 14 C -0.035 4.035 15 C -0.229 4.229 16 C 0.128 3.872 17 C -0.424 4.424 18 H 0.090 0.910 19 C 0.071 3.929 20 N -0.757 5.757 21 Si 0.916 3.084 22 H -0.265 1.265 23 H -0.271 1.271 24 H -0.255 1.255 25 C -0.179 4.179 26 C -0.032 4.032 27 N -0.518 5.518 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.291 0.709 37 H 0.123 0.877 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 11.611 1.494 11.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.090 4.090 3 C 0.070 3.930 4 F -0.116 7.116 5 C -0.159 4.159 6 C -0.120 4.120 7 C -0.103 4.103 8 C 0.015 3.985 9 C -0.062 4.062 10 N -0.117 5.117 11 O -0.004 6.004 12 C 0.080 3.920 13 C -0.207 4.207 14 C -0.055 4.055 15 C -0.249 4.249 16 C 0.124 3.876 17 C -0.451 4.451 18 H 0.108 0.892 19 C -0.152 4.152 20 N -0.379 5.379 21 Si 0.739 3.261 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.179 1.179 25 C -0.199 4.199 26 C -0.052 4.052 27 N -0.253 5.253 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.141 0.859 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.826 12.392 1.336 12.597 hybrid contribution 0.111 -0.616 0.029 0.626 sum 1.937 11.776 1.365 12.012 Atomic orbital electron populations 1.21096 0.89321 1.04564 1.03454 1.19966 0.97694 0.90738 1.00581 1.17285 0.89922 0.80653 1.05179 1.91478 1.80482 1.45543 1.94084 1.21234 0.92029 1.00036 1.02563 1.20937 1.00444 0.90920 0.99721 1.21347 0.92494 0.99449 0.96973 1.17110 0.92229 0.86883 1.02298 1.23480 0.87478 0.93316 1.01902 1.74757 1.15831 0.96418 1.24735 1.85313 1.35345 1.11669 1.68089 1.26639 0.78758 0.95998 0.90644 1.16649 0.95331 0.81119 1.27598 1.20380 0.95288 0.94189 0.95649 1.20667 0.97126 0.93134 1.13944 1.17857 0.91153 0.93411 0.85150 1.19953 1.01883 0.92015 1.31204 0.89214 1.26193 0.94695 1.01813 0.92540 1.69755 1.10421 1.39124 1.18631 0.86146 0.78892 0.80497 0.80589 1.19030 1.19525 1.17887 1.20960 0.99032 0.91826 1.08043 1.20398 0.94496 0.94654 0.95669 1.72233 1.28557 0.97727 1.26738 0.90622 0.91509 0.87936 0.84496 0.84326 0.83800 0.88050 0.87819 0.89756 0.85886 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.00 36.01 0.32 -1.43 16 2 C -0.09 -1.25 5.91 -104.22 -0.62 -1.86 16 3 C 0.09 1.12 7.24 -39.46 -0.29 0.84 16 4 F -0.14 -1.73 16.48 2.25 0.04 -1.69 16 5 C -0.14 -1.45 10.02 -39.45 -0.40 -1.85 16 6 C -0.10 -1.06 10.03 -39.64 -0.40 -1.46 16 7 C -0.08 -1.10 9.70 -39.26 -0.38 -1.48 16 8 C 0.02 0.26 5.88 -104.90 -0.62 -0.36 16 9 C 0.21 3.87 7.66 -156.34 -1.20 2.68 16 10 N -0.40 -7.54 8.70 31.25 0.27 -7.26 16 11 O 0.05 0.97 11.09 16.39 0.18 1.15 16 12 C 0.29 5.94 7.98 -13.88 -0.11 5.83 16 13 C -0.20 -4.34 5.89 -104.73 -0.62 -4.95 16 14 C -0.03 -0.72 9.65 -39.61 -0.38 -1.10 16 15 C -0.23 -4.95 9.73 -39.28 -0.38 -5.33 16 16 C 0.13 3.01 5.57 -106.80 -0.59 2.42 16 17 C -0.42 -9.66 9.03 -37.83 -0.34 -10.01 16 18 H 0.09 1.92 7.91 -52.49 -0.42 1.51 16 19 C 0.07 1.53 5.12 -17.31 -0.09 1.45 16 20 N -0.76 -17.02 11.01 55.56 0.61 -16.41 16 21 Si 0.92 15.98 29.60 -169.99 -5.03 10.95 16 22 H -0.27 -4.60 7.11 56.52 0.40 -4.20 16 23 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16 24 H -0.26 -4.44 7.11 56.52 0.40 -4.04 16 25 C -0.18 -4.17 8.63 -39.28 -0.34 -4.51 16 26 C -0.03 -0.71 9.63 -39.60 -0.38 -1.09 16 27 N -0.52 -10.46 10.92 -10.22 -0.11 -10.57 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.81 7.65 -51.93 -0.40 0.41 16 30 H 0.10 1.58 5.18 -51.93 -0.27 1.31 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.14 1.91 7.87 -52.48 -0.41 1.50 16 34 H 0.10 1.85 7.92 -52.49 -0.42 1.43 16 35 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 36 H 0.29 5.86 8.29 -40.82 -0.34 5.52 16 37 H 0.12 2.91 6.21 -52.49 -0.33 2.59 16 38 H 0.10 2.20 7.85 -52.49 -0.41 1.79 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -24.76 336.98 -9.24 -34.00 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -3.47 Total: 6.99 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -6.80 Total: -22.22 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.77 Total: -34.25 kcal Atomic # 8 Polarization: 0.97 SS G_CDS: 0.18 Total: 1.15 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 15.98 SS G_CDS: -5.03 Total: 10.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -24.76 -9.24 -34.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216639352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.568 kcal (2) G-P(sol) polarization free energy of solvation -24.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds