Wall clock time and date at job start Tue Mar 31 2020 13:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38275 * 120.07493 * 2 1 4 4 F 1.35101 * 119.96754 * 0.02562 * 3 2 1 5 5 C 1.38521 * 120.06929 * 180.25587 * 3 2 1 6 6 C 1.38300 * 120.21064 * 359.78197 * 5 3 2 7 7 C 1.38014 * 120.14702 * 359.97438 * 6 5 3 8 8 C 1.39271 * 120.07428 * 179.78833 * 2 1 3 9 9 C 1.48444 * 120.10396 * 359.97438 * 8 2 1 10 10 N 1.30916 * 126.29530 * 359.70432 * 9 8 2 11 11 O 1.21280 * 110.36157 * 179.72334 * 10 9 8 12 12 C 1.34300 * 109.88421 * 0.46901 * 11 10 9 13 13 C 1.47447 * 126.58496 * 179.80189 * 12 11 10 14 14 C 1.40127 * 119.90033 * 359.68698 * 13 12 11 15 15 C 1.36202 * 120.10138 * 179.97438 * 14 13 12 16 16 C 1.40960 * 119.90019 * 0.02562 * 15 14 13 17 17 C 1.40966 * 120.09901 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00261 * 334.82916 * 17 16 15 19 19 C 1.40158 * 119.99647 * 155.10991 * 17 16 15 20 20 N 1.30696 * 120.00098 * 341.76665 * 19 17 16 21 21 Si 1.86799 * 119.99719 * 161.77371 * 19 17 16 22 22 H 1.48500 * 109.47198 * 94.52461 * 21 19 17 23 23 H 1.48501 * 109.47058 * 214.51850 * 21 19 17 24 24 H 1.48490 * 109.47256 * 334.52076 * 21 19 17 25 25 C 1.40971 * 119.80069 * 0.25517 * 16 15 14 26 26 C 1.36208 * 119.89455 * 359.46557 * 25 16 15 27 27 N 1.32165 * 106.83352 * 359.53587 * 12 11 10 28 28 H 1.08999 * 109.47104 * 270.21467 * 1 2 3 29 29 H 1.08997 * 109.46976 * 30.21219 * 1 2 3 30 30 H 1.08996 * 109.46677 * 150.21342 * 1 2 3 31 31 H 1.07991 * 119.89773 * 179.76788 * 5 3 2 32 32 H 1.08000 * 119.92660 * 179.97438 * 6 5 3 33 33 H 1.08007 * 120.03597 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.94682 * 359.97438 * 14 13 12 35 35 H 1.08001 * 120.05073 * 180.02562 * 15 14 13 36 36 H 0.97001 * 120.00404 * 180.02562 * 20 19 17 37 37 H 1.08000 * 120.05253 * 179.72134 * 25 16 15 38 38 H 1.07995 * 119.95298 * 180.29565 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1966 0.0000 4 9 1.5253 2.3671 0.0005 5 6 3.5851 1.1965 -0.0054 6 6 4.2809 0.0012 -0.0062 7 6 3.5982 -1.1982 -0.0011 8 6 2.2049 -1.2052 0.0045 9 6 1.4667 -2.4931 0.0098 10 7 0.1659 -2.6406 0.0163 11 8 -0.1252 -3.8180 0.0138 12 6 0.9911 -4.5646 0.0156 13 6 1.0634 -6.0373 0.0177 14 6 -0.1156 -6.7945 0.0246 15 6 -0.0536 -8.1551 0.0261 16 6 1.1991 -8.8014 0.0211 17 6 1.2682 -10.2094 0.0231 18 1 0.4511 -10.7896 0.4258 19 6 2.3998 -10.8562 -0.4922 20 7 3.2172 -10.2122 -1.2829 21 14 2.7395 -12.6387 -0.0490 22 1 2.1790 -13.5256 -1.1000 23 1 4.2056 -12.8535 0.0497 24 1 2.1041 -12.9542 1.2555 25 6 2.3826 -8.0355 0.0201 26 6 2.3110 -6.6754 0.0129 27 7 2.0125 -3.7258 0.0091 28 1 -0.3633 0.0039 1.0276 29 1 -0.3633 0.8881 -0.5171 30 1 -0.3632 -0.8919 -0.5105 31 1 4.1235 2.1326 -0.0091 32 1 5.3609 0.0065 -0.0108 33 1 4.1434 -2.1306 -0.0013 34 1 -1.0749 -6.2985 0.0289 35 1 -0.9628 -8.7380 0.0310 36 1 4.0002 -10.6599 -1.6399 37 1 3.3446 -8.5265 0.0208 38 1 3.2171 -6.0877 0.0073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216639352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:18 Heat of formation + Delta-G solvation = 50.861159 kcal Electronic energy + Delta-G solvation = -25074.952456 eV Core-core repulsion = 21185.060320 eV Total energy + Delta-G solvation = -3889.892136 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.00022 -46.23205 -40.33498 -39.57297 -36.69430 -35.98098 -34.61727 -33.27441 -31.73014 -31.60880 -31.05753 -28.29371 -27.71167 -25.78103 -24.56276 -23.43033 -22.85790 -22.42105 -21.65933 -19.39952 -19.17686 -18.93844 -17.96237 -17.74356 -17.18662 -16.81516 -16.79055 -16.60008 -15.84022 -15.66329 -15.26489 -14.62753 -14.53615 -14.51342 -14.26691 -14.09057 -13.97312 -13.80227 -13.46062 -13.34814 -12.99737 -12.92779 -12.77313 -12.64188 -12.53989 -12.36994 -12.25231 -11.86783 -11.66374 -11.53221 -11.38261 -11.01747 -9.87764 -9.74492 -9.62295 -9.30009 -8.85019 -6.49943 -0.50578 -0.09859 0.04531 1.00860 1.15137 1.39372 1.43480 1.57045 1.71190 1.93951 2.15595 2.44220 2.52705 2.64283 3.01539 3.24527 3.61801 3.63540 3.76892 3.89161 4.14340 4.24044 4.38158 4.38887 4.49612 4.55465 4.60650 4.75034 4.90210 4.91456 4.95639 5.01409 5.02419 5.13744 5.18899 5.21547 5.29881 5.35521 5.56125 5.75570 5.76891 5.94938 5.99208 6.14228 6.49093 6.70277 6.81487 7.23480 8.08905 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.029815 B = 0.002369 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.885183 B =11815.062301 C =12667.382302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 C 0.081 3.919 4 F -0.137 7.137 5 C -0.119 4.119 6 C -0.087 4.087 7 C -0.089 4.089 8 C -0.018 4.018 9 C 0.210 3.790 10 N -0.403 5.403 11 O 0.045 5.955 12 C 0.279 3.721 13 C -0.209 4.209 14 C -0.033 4.033 15 C -0.239 4.239 16 C 0.103 3.897 17 C -0.450 4.450 18 H 0.097 0.903 19 C 0.035 3.965 20 N -0.789 5.789 21 Si 0.988 3.012 22 H -0.260 1.260 23 H -0.265 1.265 24 H -0.253 1.253 25 C -0.197 4.197 26 C -0.035 4.035 27 N -0.527 5.527 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.174 0.826 32 H 0.179 0.821 33 H 0.139 0.861 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.300 0.700 37 H 0.112 0.888 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 12.920 1.688 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.102 4.102 3 C 0.062 3.938 4 F -0.116 7.116 5 C -0.139 4.139 6 C -0.104 4.104 7 C -0.109 4.109 8 C -0.020 4.020 9 C -0.060 4.060 10 N -0.121 5.121 11 O -0.006 6.006 12 C 0.070 3.930 13 C -0.214 4.214 14 C -0.053 4.053 15 C -0.258 4.258 16 C 0.099 3.901 17 C -0.476 4.476 18 H 0.115 0.885 19 C -0.186 4.186 20 N -0.412 5.412 21 Si 0.808 3.192 22 H -0.184 1.184 23 H -0.190 1.190 24 H -0.177 1.177 25 C -0.216 4.216 26 C -0.055 4.055 27 N -0.262 5.262 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.192 0.808 32 H 0.196 0.804 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.882 13.711 1.527 14.093 hybrid contribution -0.177 -0.774 -0.053 0.796 sum 2.704 12.937 1.475 13.299 Atomic orbital electron populations 1.21031 0.89557 1.04205 1.03354 1.20029 0.97829 0.91144 1.01192 1.17429 0.90875 0.80003 1.05514 1.91481 1.80707 1.45289 1.94118 1.21679 0.91028 1.01626 0.99523 1.21342 1.02241 0.89455 0.97407 1.21480 0.91596 1.00745 0.97060 1.17264 0.93242 0.85923 1.05544 1.24044 0.87424 0.94002 1.00491 1.74805 1.16178 0.95795 1.25364 1.85307 1.35114 1.11997 1.68194 1.26545 0.79374 0.95847 0.91226 1.16770 0.95419 0.81784 1.27457 1.20616 0.96088 0.93965 0.94602 1.20881 0.97184 0.93717 1.14036 1.18192 0.91826 0.94232 0.85846 1.20255 1.03157 0.92120 1.32114 0.88485 1.27029 0.93915 1.05856 0.91767 1.69790 1.11032 1.41055 1.19282 0.85076 0.78802 0.75117 0.80242 1.18403 1.18959 1.17670 1.20923 0.98802 0.92296 1.09585 1.20454 0.95098 0.94386 0.95548 1.72219 1.28786 0.98486 1.26716 0.90632 0.90118 0.89856 0.80809 0.80392 0.84351 0.85645 0.86228 0.88899 0.86981 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.00 71.24 0.64 -2.76 16 2 C -0.10 -2.74 5.91 -19.61 -0.12 -2.86 16 3 C 0.08 1.85 7.24 22.35 0.16 2.01 16 4 F -0.14 -3.13 16.48 44.97 0.74 -2.38 16 5 C -0.12 -2.00 10.02 22.35 0.22 -1.78 16 6 C -0.09 -1.47 10.03 22.23 0.22 -1.24 16 7 C -0.09 -2.22 9.70 22.48 0.22 -2.00 16 8 C -0.02 -0.55 5.88 -20.04 -0.12 -0.67 16 9 C 0.21 7.90 7.66 137.38 1.05 8.95 16 10 N -0.40 -15.41 8.70 -57.43 -0.50 -15.91 16 11 O 0.04 1.79 11.09 68.70 0.76 2.55 16 12 C 0.28 11.74 7.98 87.15 0.70 12.43 16 13 C -0.21 -9.17 5.89 -19.93 -0.12 -9.29 16 14 C -0.03 -1.36 9.65 22.25 0.21 -1.15 16 15 C -0.24 -10.44 9.73 22.46 0.22 -10.22 16 16 C 0.10 4.96 5.57 -21.27 -0.12 4.84 16 17 C -0.45 -20.87 9.03 23.41 0.21 -20.66 16 18 H 0.10 4.19 7.91 -2.91 -0.02 4.17 16 19 C 0.04 1.52 5.12 85.33 0.44 1.96 16 20 N -0.79 -36.14 11.01 21.86 0.24 -35.90 16 21 Si 0.99 32.43 29.60 68.60 2.03 34.46 16 22 H -0.26 -8.23 7.11 99.48 0.71 -7.52 16 23 H -0.27 -8.39 7.11 99.48 0.71 -7.69 16 24 H -0.25 -8.15 7.11 99.48 0.71 -7.45 16 25 C -0.20 -9.50 8.63 22.47 0.19 -9.31 16 26 C -0.03 -1.59 9.63 22.26 0.21 -1.38 16 27 N -0.53 -21.61 10.92 -302.01 -3.30 -24.91 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.08 1.89 7.65 -2.39 -0.02 1.88 16 30 H 0.08 2.60 5.18 -2.39 -0.01 2.59 16 31 H 0.17 1.68 8.06 -2.92 -0.02 1.66 16 32 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.14 3.57 7.87 -2.91 -0.02 3.55 16 34 H 0.13 4.50 7.92 -2.91 -0.02 4.48 16 35 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 36 H 0.30 12.20 8.29 -92.71 -0.77 11.43 16 37 H 0.11 5.56 6.21 -2.91 -0.02 5.54 16 38 H 0.11 4.71 7.85 -2.91 -0.02 4.69 16 Total: -1.00 -54.94 336.98 5.33 -49.60 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 1.12 Total: 25.60 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 4.24 Total: -33.11 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -3.56 Total: -76.72 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.76 Total: 2.55 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.74 Total: -2.38 kcal Atomic # 14 Polarization: 32.43 SS G_CDS: 2.03 Total: 34.46 kcal Total: -54.94 5.33 -49.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216639352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.462 kcal (2) G-P(sol) polarization free energy of solvation -54.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds