Wall clock time and date at job start Tue Mar 31 2020 14:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30387 * 126.17843 * 2 1 4 4 N 1.28666 * 109.53274 * 179.88705 * 3 2 1 5 5 C 1.31289 * 109.23951 * 0.38082 * 4 3 2 6 6 C 1.47739 * 126.38054 * 179.73653 * 5 4 3 7 7 C 1.39683 * 120.01950 * 179.77044 * 6 5 4 8 8 C 1.37678 * 119.97415 * 179.67345 * 7 6 5 9 9 C 1.39492 * 120.02591 * 0.61591 * 8 7 6 10 10 C 1.48272 * 119.98023 * 179.69767 * 9 8 7 11 11 C 1.39653 * 120.02276 * 129.98203 * 10 9 8 12 12 C 1.38438 * 120.41909 * 180.02562 * 11 10 9 13 13 C 1.37674 * 120.46135 * 359.97438 * 12 11 10 14 14 C 1.40758 * 120.03049 * 0.02562 * 13 12 11 15 15 C 1.41315 * 120.20504 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99819 * 150.11081 * 15 14 13 17 17 C 1.39934 * 120.00340 * 330.11103 * 15 14 13 18 18 N 1.30846 * 120.00325 * 161.78260 * 17 15 14 19 19 Si 1.86802 * 119.99546 * 341.78342 * 17 15 14 20 20 H 1.48502 * 109.47374 * 95.40927 * 19 17 15 21 21 H 1.48499 * 109.47223 * 215.41352 * 19 17 15 22 22 H 1.48510 * 109.47279 * 335.41031 * 19 17 15 23 23 C 1.39125 * 120.02339 * 309.70603 * 10 9 8 24 24 F 1.35100 * 120.22827 * 359.97438 * 23 10 9 25 25 C 1.39499 * 120.04141 * 359.68262 * 9 8 7 26 26 C 1.37677 * 120.02298 * 359.97438 * 25 9 8 27 27 O 1.34423 * 126.18441 * 180.30996 * 2 1 3 28 28 H 1.08998 * 109.47291 * 269.68657 * 1 2 3 29 29 H 1.09009 * 109.46746 * 149.68867 * 1 2 3 30 30 H 1.08996 * 109.47163 * 29.69617 * 1 2 3 31 31 H 1.08004 * 120.01214 * 359.97438 * 7 6 5 32 32 H 1.08002 * 119.98964 * 180.33989 * 8 7 6 33 33 H 1.08000 * 119.78731 * 0.02562 * 11 10 9 34 34 H 1.08000 * 119.77343 * 180.02562 * 12 11 10 35 35 H 1.07993 * 119.98781 * 180.02562 * 13 12 11 36 36 H 0.96996 * 119.99871 * 179.97438 * 18 17 15 37 37 H 1.07997 * 119.99029 * 180.02562 * 25 9 8 38 38 H 1.08000 * 120.01536 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2767 1.0525 0.0000 4 7 3.5094 0.6839 0.0024 5 6 3.5688 -0.6276 -0.0042 6 6 4.7967 -1.4492 -0.0097 7 6 4.7050 -2.8430 -0.0117 8 6 5.8498 -3.6077 -0.0236 9 6 7.1011 -2.9911 -0.0206 10 6 8.3334 -3.8157 -0.0266 11 6 9.3455 -3.5528 -0.9522 12 6 10.4992 -4.3178 -0.9655 13 6 10.6644 -5.3473 -0.0665 14 6 9.6565 -5.6291 0.8748 15 6 9.8224 -6.6845 1.7997 16 1 9.3572 -6.6280 2.7727 17 6 10.5895 -7.8030 1.4549 18 7 11.0427 -8.5989 2.3893 19 14 10.9664 -8.1596 -0.3396 20 1 12.2945 -7.5940 -0.6884 21 1 10.9804 -9.6281 -0.5602 22 1 9.9240 -7.5403 -1.1971 23 6 8.4846 -4.8481 0.8935 24 9 7.5116 -5.1034 1.7954 25 6 7.1938 -1.5992 -0.0123 26 6 6.0502 -0.8327 -0.0076 27 8 2.3006 -1.0849 -0.0059 28 1 -0.3634 -0.0056 1.0276 29 1 -0.3633 -0.8873 -0.5187 30 1 -0.3633 0.8927 -0.5091 31 1 3.7363 -3.3206 -0.0089 32 1 5.7791 -4.6853 -0.0307 33 1 9.2274 -2.7475 -1.6622 34 1 11.2755 -4.1051 -1.6856 35 1 11.5677 -5.9389 -0.0834 36 1 11.5740 -9.3743 2.1502 37 1 8.1630 -1.1228 -0.0104 38 1 6.1221 0.2449 -0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239018152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:38 Heat of formation + Delta-G solvation = 30.049951 kcal Electronic energy + Delta-G solvation = -25203.558973 eV Core-core repulsion = 21312.764395 eV Total energy + Delta-G solvation = -3890.794577 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.57341 -44.26951 -39.30204 -37.53399 -36.31636 -34.22366 -33.47231 -32.05939 -31.07736 -30.32762 -29.28609 -27.51340 -25.41624 -24.41165 -23.27393 -22.30445 -22.00085 -20.74999 -20.66247 -17.95810 -17.59419 -17.57709 -16.66069 -16.34717 -15.60684 -15.48279 -15.11471 -14.83075 -14.55264 -14.19357 -14.07586 -13.74472 -13.59174 -13.41247 -13.23149 -13.03413 -12.81198 -12.54107 -12.38003 -12.15793 -12.04391 -11.96623 -11.61461 -11.35440 -11.07251 -10.94090 -10.91805 -10.54341 -10.16649 -10.02379 -9.89472 -9.35906 -8.97928 -8.63043 -7.81863 -7.56139 -7.14233 -4.68135 0.34475 1.43354 1.46455 2.01206 2.14997 2.31105 2.49104 2.96871 3.08205 3.17499 3.59420 3.79177 3.82426 4.14530 4.23971 4.59420 4.87800 4.89059 4.92943 4.97161 5.03925 5.11220 5.22470 5.23865 5.39978 5.49514 5.50639 5.59844 5.78102 5.85271 6.06221 6.13322 6.27345 6.33149 6.35341 6.52374 6.68721 6.82498 6.91468 7.11777 7.25104 7.38499 7.53761 7.75704 8.11926 8.14515 8.35366 8.53713 9.87128 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.028709 B = 0.002597 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.067129 B =10779.046033 C =11266.363950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.151 3.849 3 N -0.286 5.286 4 N -0.285 5.285 5 C 0.227 3.773 6 C -0.051 4.051 7 C -0.079 4.079 8 C -0.107 4.107 9 C 0.014 3.986 10 C -0.065 4.065 11 C -0.205 4.205 12 C -0.083 4.083 13 C -0.216 4.216 14 C 0.065 3.935 15 C -0.434 4.434 16 H 0.096 0.904 17 C 0.084 3.916 18 N -0.795 5.795 19 Si 0.911 3.089 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.242 1.242 23 C 0.012 3.988 24 F -0.149 7.149 25 C -0.112 4.112 26 C -0.063 4.063 27 O -0.222 6.222 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.289 0.711 37 H 0.137 0.863 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.205 9.887 -6.412 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.059 4.059 3 N -0.134 5.134 4 N -0.132 5.132 5 C 0.020 3.980 6 C -0.053 4.053 7 C -0.098 4.098 8 C -0.125 4.125 9 C 0.013 3.987 10 C -0.066 4.066 11 C -0.224 4.224 12 C -0.101 4.101 13 C -0.235 4.235 14 C 0.061 3.939 15 C -0.462 4.462 16 H 0.114 0.886 17 C -0.137 4.137 18 N -0.418 5.418 19 Si 0.737 3.263 20 H -0.193 1.193 21 H -0.214 1.214 22 H -0.165 1.165 23 C -0.008 4.008 24 F -0.128 7.128 25 C -0.130 4.130 26 C -0.083 4.083 27 O -0.102 6.102 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.155 0.845 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.792 10.899 -6.213 17.917 hybrid contribution -0.247 -1.604 -0.409 1.674 sum -13.039 9.294 -6.622 17.328 Atomic orbital electron populations 1.20336 0.80189 1.05639 1.05206 1.27983 0.97771 0.79574 1.00550 1.74361 0.96213 1.25633 1.17188 1.74743 1.11732 1.08348 1.18411 1.25608 0.83398 0.90394 0.98614 1.17198 0.86477 0.91417 1.10217 1.21089 0.99274 0.91576 0.97899 1.21243 0.90858 1.00702 0.99648 1.19204 0.92985 0.93012 0.93499 1.18372 0.93941 0.95937 0.98359 1.20240 0.94964 1.04305 1.02896 1.20573 0.96424 0.95484 0.97660 1.20941 0.99280 1.01690 1.01621 1.17639 0.89606 0.93475 0.93171 1.19431 1.25295 1.00100 1.01358 0.88573 1.26189 0.91758 0.95273 1.00459 1.69684 1.23903 1.12382 1.35795 0.86300 0.80706 0.76961 0.82367 1.19258 1.21417 1.16517 1.17737 0.87945 1.01274 0.93828 1.91326 1.61296 1.93929 1.66281 1.21201 0.98473 0.92619 1.00719 1.21023 0.89911 1.00567 0.96772 1.84835 1.17276 1.37987 1.70098 0.88348 0.88902 0.87585 0.85290 0.84670 0.87518 0.87815 0.87295 0.90034 0.84493 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.01 0.38 0.09 16 2 C 0.15 1.68 8.47 -12.89 -0.11 1.57 16 3 N -0.29 -4.02 12.22 32.58 0.40 -3.63 16 4 N -0.29 -4.39 11.91 32.06 0.38 -4.01 16 5 C 0.23 3.26 7.98 -13.90 -0.11 3.14 16 6 C -0.05 -0.72 5.88 -104.94 -0.62 -1.34 16 7 C -0.08 -1.09 9.71 -39.25 -0.38 -1.47 16 8 C -0.11 -1.68 8.84 -39.32 -0.35 -2.03 16 9 C 0.01 0.23 5.31 -104.83 -0.56 -0.32 16 10 C -0.07 -1.29 5.47 -104.91 -0.57 -1.86 16 11 C -0.20 -3.81 9.50 -38.98 -0.37 -4.18 16 12 C -0.08 -1.61 10.00 -39.71 -0.40 -2.01 16 13 C -0.22 -4.79 7.17 -38.84 -0.28 -5.07 16 14 C 0.06 1.57 5.11 -106.79 -0.55 1.03 16 15 C -0.43 -11.37 9.26 -37.78 -0.35 -11.72 16 16 H 0.10 2.70 7.97 -52.49 -0.42 2.28 16 17 C 0.08 2.10 5.40 -17.34 -0.09 2.00 16 18 N -0.79 -20.25 13.93 55.55 0.77 -19.48 16 19 Si 0.91 19.45 24.52 -169.99 -4.17 15.28 16 20 H -0.27 -5.43 6.71 56.52 0.38 -5.05 16 21 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.24 -5.27 6.86 56.52 0.39 -4.88 16 23 C 0.01 0.28 7.16 -38.27 -0.27 0.01 16 24 F -0.15 -3.45 15.40 2.25 0.03 -3.42 16 25 C -0.11 -1.64 9.48 -39.32 -0.37 -2.01 16 26 C -0.06 -0.87 9.68 -39.25 -0.38 -1.25 16 27 O -0.22 -2.84 10.66 3.96 0.04 -2.80 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.33 8.14 -51.92 -0.42 -0.10 16 30 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.13 1.51 7.92 -52.48 -0.42 1.10 16 32 H 0.14 2.14 7.79 -52.49 -0.41 1.73 16 33 H 0.11 1.70 8.03 -52.49 -0.42 1.28 16 34 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.11 2.38 4.73 -52.49 -0.25 2.14 16 36 H 0.29 6.60 8.30 -40.82 -0.34 6.26 16 37 H 0.14 1.79 8.03 -52.49 -0.42 1.37 16 38 H 0.14 1.69 7.85 -52.49 -0.41 1.28 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -28.86 337.33 -6.44 -35.30 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.61 Total: 3.07 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -5.38 Total: -25.41 kcal Atomic # 7 Polarization: -28.66 SS G_CDS: 1.55 Total: -27.11 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.03 Total: -3.42 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.17 Total: 15.28 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.86 -6.44 -35.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239018152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.353 kcal (2) G-P(sol) polarization free energy of solvation -28.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds