Wall clock time and date at job start Tue Mar 31 2020 14:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30387 * 126.17843 * 2 1 4 4 N 1.28666 * 109.53274 * 179.88705 * 3 2 1 5 5 C 1.31289 * 109.23951 * 0.38082 * 4 3 2 6 6 C 1.47739 * 126.38054 * 179.73653 * 5 4 3 7 7 C 1.39683 * 120.01950 * 179.77044 * 6 5 4 8 8 C 1.37678 * 119.97415 * 179.67345 * 7 6 5 9 9 C 1.39492 * 120.02591 * 0.61591 * 8 7 6 10 10 C 1.48272 * 119.98023 * 179.69767 * 9 8 7 11 11 C 1.39653 * 120.02276 * 129.98203 * 10 9 8 12 12 C 1.38438 * 120.41909 * 180.02562 * 11 10 9 13 13 C 1.37674 * 120.46135 * 359.97438 * 12 11 10 14 14 C 1.40758 * 120.03049 * 0.02562 * 13 12 11 15 15 C 1.41315 * 120.20504 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99819 * 150.11081 * 15 14 13 17 17 C 1.39934 * 120.00340 * 330.11103 * 15 14 13 18 18 N 1.30846 * 120.00325 * 161.78260 * 17 15 14 19 19 Si 1.86802 * 119.99546 * 341.78342 * 17 15 14 20 20 H 1.48502 * 109.47374 * 95.40927 * 19 17 15 21 21 H 1.48499 * 109.47223 * 215.41352 * 19 17 15 22 22 H 1.48510 * 109.47279 * 335.41031 * 19 17 15 23 23 C 1.39125 * 120.02339 * 309.70603 * 10 9 8 24 24 F 1.35100 * 120.22827 * 359.97438 * 23 10 9 25 25 C 1.39499 * 120.04141 * 359.68262 * 9 8 7 26 26 C 1.37677 * 120.02298 * 359.97438 * 25 9 8 27 27 O 1.34423 * 126.18441 * 180.30996 * 2 1 3 28 28 H 1.08998 * 109.47291 * 269.68657 * 1 2 3 29 29 H 1.09009 * 109.46746 * 149.68867 * 1 2 3 30 30 H 1.08996 * 109.47163 * 29.69617 * 1 2 3 31 31 H 1.08004 * 120.01214 * 359.97438 * 7 6 5 32 32 H 1.08002 * 119.98964 * 180.33989 * 8 7 6 33 33 H 1.08000 * 119.78731 * 0.02562 * 11 10 9 34 34 H 1.08000 * 119.77343 * 180.02562 * 12 11 10 35 35 H 1.07993 * 119.98781 * 180.02562 * 13 12 11 36 36 H 0.96996 * 119.99871 * 179.97438 * 18 17 15 37 37 H 1.07997 * 119.99029 * 180.02562 * 25 9 8 38 38 H 1.08000 * 120.01536 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2767 1.0525 0.0000 4 7 3.5094 0.6839 0.0024 5 6 3.5688 -0.6276 -0.0042 6 6 4.7967 -1.4492 -0.0097 7 6 4.7050 -2.8430 -0.0117 8 6 5.8498 -3.6077 -0.0236 9 6 7.1011 -2.9911 -0.0206 10 6 8.3334 -3.8157 -0.0266 11 6 9.3455 -3.5528 -0.9522 12 6 10.4992 -4.3178 -0.9655 13 6 10.6644 -5.3473 -0.0665 14 6 9.6565 -5.6291 0.8748 15 6 9.8224 -6.6845 1.7997 16 1 9.3572 -6.6280 2.7727 17 6 10.5895 -7.8030 1.4549 18 7 11.0427 -8.5989 2.3893 19 14 10.9664 -8.1596 -0.3396 20 1 12.2945 -7.5940 -0.6884 21 1 10.9804 -9.6281 -0.5602 22 1 9.9240 -7.5403 -1.1971 23 6 8.4846 -4.8481 0.8935 24 9 7.5116 -5.1034 1.7954 25 6 7.1938 -1.5992 -0.0123 26 6 6.0502 -0.8327 -0.0076 27 8 2.3006 -1.0849 -0.0059 28 1 -0.3634 -0.0056 1.0276 29 1 -0.3633 -0.8873 -0.5187 30 1 -0.3633 0.8927 -0.5091 31 1 3.7363 -3.3206 -0.0089 32 1 5.7791 -4.6853 -0.0307 33 1 9.2274 -2.7475 -1.6622 34 1 11.2755 -4.1051 -1.6856 35 1 11.5677 -5.9389 -0.0834 36 1 11.5740 -9.3743 2.1502 37 1 8.1630 -1.1228 -0.0104 38 1 6.1221 0.2449 -0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239018152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:37 Heat of formation + Delta-G solvation = 11.117895 kcal Electronic energy + Delta-G solvation = -25204.379928 eV Core-core repulsion = 21312.764395 eV Total energy + Delta-G solvation = -3891.615533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.34527 -45.25919 -40.54911 -39.11820 -37.32532 -35.83642 -34.68128 -33.22651 -32.24119 -31.89593 -30.54026 -28.56109 -27.17615 -25.61713 -24.32495 -23.57232 -23.11676 -22.30277 -22.09635 -19.44103 -18.88221 -18.56179 -18.32572 -17.43857 -17.21548 -16.95871 -16.46093 -16.30214 -15.95100 -15.48126 -15.37013 -15.03497 -14.73255 -14.52384 -14.32731 -14.03798 -13.91170 -13.77195 -13.68621 -13.56326 -13.44965 -13.19633 -13.04168 -12.81580 -12.56699 -12.27048 -12.17536 -12.00685 -11.78732 -11.61440 -11.26396 -11.02504 -10.10409 -9.93803 -9.51263 -9.06497 -8.96563 -6.59022 -0.76341 0.29969 0.31235 0.62409 0.76387 1.09303 1.24949 1.33764 1.39586 1.48713 2.08370 2.45970 2.67070 2.69101 3.27464 3.29110 3.57155 3.70957 3.80363 3.87053 3.99179 4.13763 4.25842 4.32949 4.34611 4.43029 4.49187 4.56385 4.69093 4.70780 4.71883 4.87510 4.96355 5.03152 5.05387 5.22125 5.23709 5.37130 5.54341 5.58401 5.68951 5.74799 5.83626 6.01539 6.25802 6.57339 6.67341 7.11787 8.12005 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.028709 B = 0.002597 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.067129 B =10779.046033 C =11266.363950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.172 3.828 3 N -0.323 5.323 4 N -0.303 5.303 5 C 0.213 3.787 6 C -0.046 4.046 7 C -0.074 4.074 8 C -0.114 4.114 9 C -0.015 4.015 10 C -0.057 4.057 11 C -0.180 4.180 12 C -0.080 4.080 13 C -0.223 4.223 14 C 0.046 3.954 15 C -0.481 4.481 16 H 0.049 0.951 17 C 0.046 3.954 18 N -0.843 5.843 19 Si 0.967 3.033 20 H -0.245 1.245 21 H -0.277 1.277 22 H -0.249 1.249 23 C -0.019 4.019 24 F -0.162 7.162 25 C -0.103 4.103 26 C -0.060 4.060 27 O -0.226 6.226 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.149 0.851 32 H 0.126 0.874 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.111 0.889 36 H 0.297 0.703 37 H 0.156 0.844 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.427 12.329 -9.447 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.038 4.038 3 N -0.170 5.170 4 N -0.149 5.149 5 C 0.004 3.996 6 C -0.048 4.048 7 C -0.093 4.093 8 C -0.132 4.132 9 C -0.016 4.016 10 C -0.058 4.058 11 C -0.199 4.199 12 C -0.098 4.098 13 C -0.242 4.242 14 C 0.042 3.958 15 C -0.510 4.510 16 H 0.067 0.933 17 C -0.169 4.169 18 N -0.468 5.468 19 Si 0.788 3.212 20 H -0.169 1.169 21 H -0.203 1.203 22 H -0.172 1.172 23 C -0.039 4.039 24 F -0.141 7.141 25 C -0.120 4.120 26 C -0.079 4.079 27 O -0.106 6.106 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.166 0.834 32 H 0.144 0.856 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.174 0.826 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.020 13.369 -9.245 21.466 hybrid contribution -0.161 -2.033 0.468 2.092 sum -14.181 11.336 -8.778 20.166 Atomic orbital electron populations 1.20778 0.76043 1.07562 1.07104 1.29189 0.99469 0.78407 0.96776 1.74325 0.96136 1.26874 1.19673 1.74665 1.12852 1.08863 1.18569 1.25541 0.83959 0.90258 0.99796 1.17345 0.86901 0.91518 1.09058 1.21193 0.99485 0.91491 0.97135 1.21225 0.91337 1.00515 1.00116 1.19160 0.92116 0.93824 0.96478 1.18684 0.95397 0.94810 0.96949 1.20846 0.93559 1.03828 1.01657 1.21062 0.97679 0.93823 0.97255 1.21128 0.98722 1.02715 1.01637 1.17830 0.90838 0.93365 0.93726 1.19294 1.28163 1.02800 1.00731 0.93286 1.26921 0.91239 0.94464 1.04270 1.69720 1.25921 1.13635 1.37566 0.85470 0.81072 0.77340 0.77272 1.16925 1.20341 1.17222 1.18109 0.87850 1.02977 0.94957 1.91281 1.61640 1.94227 1.66940 1.21321 0.99648 0.91437 0.99611 1.21183 0.89450 1.01275 0.96032 1.84858 1.16944 1.38595 1.70200 0.86181 0.86655 0.85887 0.83365 0.85621 0.83429 0.83496 0.87132 0.89234 0.82628 0.82940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 71.24 0.75 0.37 16 2 C 0.17 3.37 8.47 88.32 0.75 4.12 16 3 N -0.32 -8.53 12.22 -165.32 -2.02 -10.55 16 4 N -0.30 -8.85 11.91 -166.32 -1.98 -10.83 16 5 C 0.21 5.72 7.98 87.29 0.70 6.42 16 6 C -0.05 -1.22 5.88 -20.07 -0.12 -1.34 16 7 C -0.07 -1.93 9.71 22.49 0.22 -1.71 16 8 C -0.11 -3.50 8.84 22.44 0.20 -3.31 16 9 C -0.02 -0.49 5.31 -20.00 -0.11 -0.59 16 10 C -0.06 -2.19 5.47 -20.05 -0.11 -2.30 16 11 C -0.18 -5.99 9.50 22.66 0.22 -5.78 16 12 C -0.08 -2.80 10.00 22.18 0.22 -2.58 16 13 C -0.22 -9.64 7.17 22.75 0.16 -9.47 16 14 C 0.05 2.28 5.11 -21.27 -0.11 2.18 16 15 C -0.48 -27.13 9.26 23.44 0.22 -26.91 16 16 H 0.05 3.08 7.97 -2.91 -0.02 3.06 16 17 C 0.05 2.44 5.40 85.25 0.46 2.91 16 18 N -0.84 -45.65 13.93 21.83 0.30 -45.35 16 19 Si 0.97 40.44 24.52 68.60 1.68 42.12 16 20 H -0.24 -9.27 6.71 99.48 0.67 -8.60 16 21 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.25 -10.51 6.86 99.48 0.68 -9.83 16 23 C -0.02 -0.88 7.16 23.12 0.17 -0.72 16 24 F -0.16 -7.94 15.40 44.97 0.69 -7.25 16 25 C -0.10 -2.72 9.48 22.44 0.21 -2.51 16 26 C -0.06 -1.50 9.68 22.49 0.22 -1.29 16 27 O -0.23 -5.28 10.66 -8.75 -0.09 -5.37 16 28 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.15 3.22 7.92 -2.91 -0.02 3.20 16 32 H 0.13 4.04 7.79 -2.91 -0.02 4.02 16 33 H 0.15 3.79 8.03 -2.91 -0.02 3.77 16 34 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 35 H 0.11 4.70 4.73 -2.91 -0.01 4.68 16 36 H 0.30 14.28 8.30 -92.71 -0.77 13.51 16 37 H 0.16 3.48 8.03 -2.91 -0.02 3.46 16 38 H 0.15 3.35 7.85 -2.91 -0.02 3.33 16 Total: -1.00 -68.06 337.33 3.68 -64.38 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.05 Total: 15.37 kcal Atomic # 6 Polarization: -46.56 SS G_CDS: 4.04 Total: -42.52 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -3.70 Total: -66.73 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.09 Total: -5.37 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 0.69 Total: -7.25 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.68 Total: 42.12 kcal Total: -68.06 3.68 -64.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239018152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.501 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds