Wall clock time and date at job start Tue Mar 31 2020 14:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30455 * 126.17610 * 2 1 4 4 N 1.28666 * 109.52485 * 179.69157 * 3 2 1 5 5 C 1.31347 * 109.23210 * 0.44864 * 4 3 2 6 6 C 1.47635 * 126.38449 * 179.82537 * 5 4 3 7 7 C 1.39806 * 119.99703 * 359.68731 * 6 5 4 8 8 C 1.36577 * 120.00899 * 180.02562 * 7 6 5 9 9 C 1.39851 * 119.99257 * 359.97438 * 8 7 6 10 10 C 1.47685 * 120.00681 * 179.97438 * 9 8 7 11 11 C 1.39183 * 120.32945 * 310.25623 * 10 9 8 12 12 C 1.38303 * 119.94988 * 180.32028 * 11 10 9 13 13 F 1.35102 * 119.69100 * 179.71868 * 12 11 10 14 14 C 1.39257 * 120.62843 * 359.69373 * 12 11 10 15 15 C 1.36321 * 120.67544 * 359.97438 * 14 12 11 16 16 C 1.40813 * 120.01909 * 0.02562 * 15 14 12 17 17 C 1.40756 * 120.30401 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99338 * 152.76968 * 17 16 15 19 19 C 1.40038 * 120.00026 * 333.05311 * 17 16 15 20 20 N 1.30798 * 120.00308 * 344.27911 * 19 17 16 21 21 Si 1.86803 * 119.99930 * 164.28152 * 19 17 16 22 22 H 1.48505 * 109.46920 * 59.99743 * 21 19 17 23 23 H 1.48504 * 109.47278 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47338 * 299.99911 * 21 19 17 25 25 C 1.39850 * 119.98813 * 0.25327 * 9 8 7 26 26 C 1.36576 * 119.99896 * 359.50915 * 25 9 8 27 27 O 1.34388 * 126.17967 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47158 * 270.04148 * 1 2 3 29 29 H 1.09005 * 109.47175 * 30.03760 * 1 2 3 30 30 H 1.08998 * 109.47378 * 150.04213 * 1 2 3 31 31 H 1.08004 * 119.99839 * 0.02562 * 7 6 5 32 32 H 1.07998 * 120.00672 * 180.02562 * 8 7 6 33 33 H 1.08005 * 120.02635 * 359.97438 * 11 10 9 34 34 H 1.08004 * 119.66671 * 179.97438 * 14 12 11 35 35 H 1.07999 * 119.99113 * 179.97438 * 15 14 12 36 36 H 0.97003 * 119.99900 * 180.02562 * 20 19 17 37 37 H 1.07999 * 119.99835 * 179.74782 * 25 9 8 38 38 H 1.07993 * 120.00137 * 180.20689 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2770 1.0530 0.0000 4 7 3.5097 0.6844 0.0065 5 6 3.5689 -0.6278 0.0012 6 6 4.7957 -1.4491 0.0022 7 6 6.0501 -0.8318 0.0026 8 6 7.1852 -1.5914 0.0029 9 6 7.0925 -2.9868 0.0033 10 6 8.3197 -3.8085 0.0031 11 6 9.3353 -3.5547 -0.9142 12 6 10.4783 -4.3333 -0.9118 13 9 11.4584 -4.0860 -1.8082 14 6 10.6290 -5.3695 0.0063 15 6 9.6534 -5.6362 0.9204 16 6 8.4781 -4.8609 0.9427 17 6 7.4667 -5.1314 1.8836 18 1 6.8079 -4.3404 2.2105 19 6 7.3185 -6.4245 2.4002 20 7 7.8937 -7.4368 1.8041 21 14 6.2993 -6.7039 3.9405 22 1 4.9054 -6.2514 3.7004 23 1 6.2986 -8.1500 4.2782 24 1 6.8830 -5.9323 5.0670 25 6 5.8376 -3.6041 -0.0019 26 6 4.7028 -2.8441 0.0027 27 8 2.3003 -1.0847 0.0005 28 1 -0.3633 0.0007 1.0277 29 1 -0.3634 0.8897 -0.5144 30 1 -0.3634 -0.8903 -0.5132 31 1 6.1216 0.2459 0.0027 32 1 8.1542 -1.1145 0.0036 33 1 9.2284 -2.7539 -1.6310 34 1 11.5279 -5.9681 -0.0059 35 1 9.7816 -6.4428 1.6270 36 1 7.7907 -8.3326 2.1618 37 1 5.7659 -4.6817 -0.0057 38 1 3.7338 -3.3207 0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239019124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:12 Heat of formation + Delta-G solvation = 25.705485 kcal Electronic energy + Delta-G solvation = -25433.601674 eV Core-core repulsion = 21542.618706 eV Total energy + Delta-G solvation = -3890.982968 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.61254 -44.04469 -39.16395 -37.32666 -36.10058 -33.92831 -33.45083 -31.80934 -30.88474 -29.61703 -29.30324 -27.38461 -25.43197 -24.02455 -23.02109 -22.00325 -21.73182 -20.95435 -20.13711 -17.77339 -17.47102 -17.36802 -16.60421 -16.03470 -15.62231 -15.06803 -14.78214 -14.60715 -14.38386 -14.13049 -14.06864 -13.59402 -13.40614 -13.14482 -13.00602 -12.81075 -12.71375 -12.37088 -12.16016 -12.04403 -11.83496 -11.57356 -11.40285 -11.31384 -11.06836 -10.94804 -10.65033 -10.54149 -10.25140 -9.83324 -9.70979 -9.43158 -8.68317 -8.35806 -7.63866 -7.46101 -7.08026 -4.64732 0.62214 1.71448 1.86268 2.23930 2.38141 2.51659 2.79640 2.90599 2.92339 2.98627 3.69252 3.82618 4.17469 4.29307 4.36837 4.79999 5.00566 5.13589 5.21574 5.24995 5.34072 5.37369 5.41793 5.52506 5.67473 5.77777 5.82581 5.91048 5.99592 6.05075 6.34079 6.43726 6.66970 6.68165 6.72411 6.84247 6.90943 7.07628 7.18509 7.26285 7.47089 7.61208 7.70909 7.89695 8.23852 8.33073 8.49098 8.56597 9.82418 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.003730 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.654566 B = 7505.441795 C = 9527.620472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.143 3.857 3 N -0.287 5.287 4 N -0.295 5.295 5 C 0.236 3.764 6 C -0.074 4.074 7 C -0.059 4.059 8 C -0.137 4.137 9 C 0.059 3.941 10 C -0.183 4.183 11 C -0.090 4.090 12 C -0.044 4.044 13 F -0.172 7.172 14 C -0.121 4.121 15 C -0.133 4.133 16 C 0.126 3.874 17 C -0.441 4.441 18 H 0.088 0.912 19 C 0.076 3.924 20 N -0.779 5.779 21 Si 0.909 3.091 22 H -0.261 1.261 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.104 4.104 26 C -0.081 4.081 27 O -0.223 6.223 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.288 0.712 37 H 0.141 0.859 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.905 5.072 -0.642 11.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.068 4.068 3 N -0.135 5.135 4 N -0.141 5.141 5 C 0.030 3.970 6 C -0.076 4.076 7 C -0.078 4.078 8 C -0.156 4.156 9 C 0.058 3.942 10 C -0.185 4.185 11 C -0.109 4.109 12 C -0.064 4.064 13 F -0.151 7.151 14 C -0.141 4.141 15 C -0.152 4.152 16 C 0.123 3.877 17 C -0.468 4.468 18 H 0.106 0.894 19 C -0.144 4.144 20 N -0.403 5.403 21 Si 0.732 3.268 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.185 1.185 25 C -0.122 4.122 26 C -0.100 4.100 27 O -0.103 6.103 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.146 0.854 36 H 0.099 0.901 37 H 0.159 0.841 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.521 6.071 -0.658 11.311 hybrid contribution -0.648 -1.467 0.527 1.688 sum -10.169 4.604 -0.131 11.163 Atomic orbital electron populations 1.20287 0.80441 1.05445 1.05007 1.27902 0.97686 0.79745 1.01426 1.74344 0.96365 1.25724 1.17038 1.74754 1.11519 1.08461 1.19408 1.25729 0.83362 0.90336 0.97603 1.17174 0.86204 0.91439 1.12795 1.20681 0.90134 1.00160 0.96853 1.21036 0.98067 0.93270 1.03178 1.19051 0.93147 0.91960 0.90006 1.18309 0.94182 1.04298 1.01678 1.20544 0.92504 0.98639 0.99175 1.17165 0.89057 1.03552 0.96595 1.91302 1.61879 1.94577 1.67378 1.20540 0.99811 0.97030 0.96692 1.20968 0.92416 1.01997 0.99816 1.17551 0.91864 0.88605 0.89640 1.19610 1.13165 0.95055 1.19013 0.89435 1.25999 0.95339 0.95646 0.97460 1.69757 1.34347 1.00724 1.35454 0.86322 0.80749 0.78218 0.81490 1.18583 1.20030 1.18465 1.21136 0.90695 1.01161 0.99176 1.20838 0.99338 0.91505 0.98366 1.84829 1.17398 1.37888 1.70215 0.88562 0.87768 0.89049 0.85191 0.85332 0.87642 0.87952 0.85375 0.90104 0.84147 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.36 10.51 36.00 0.38 0.02 16 2 C 0.14 1.83 8.47 -12.86 -0.11 1.72 16 3 N -0.29 -4.51 12.22 32.59 0.40 -4.12 16 4 N -0.29 -5.08 11.91 32.04 0.38 -4.70 16 5 C 0.24 3.87 7.98 -13.93 -0.11 3.76 16 6 C -0.07 -1.22 5.88 -104.89 -0.62 -1.83 16 7 C -0.06 -0.94 9.64 -39.59 -0.38 -1.32 16 8 C -0.14 -2.32 9.45 -39.58 -0.37 -2.70 16 9 C 0.06 1.13 4.93 -104.83 -0.52 0.61 16 10 C -0.18 -3.92 5.52 -104.26 -0.58 -4.49 16 11 C -0.09 -1.88 9.47 -39.21 -0.37 -2.25 16 12 C -0.04 -0.97 7.30 -39.18 -0.29 -1.25 16 13 F -0.17 -3.68 17.26 2.25 0.04 -3.64 16 14 C -0.12 -2.65 9.94 -39.89 -0.40 -3.05 16 15 C -0.13 -3.06 8.61 -39.30 -0.34 -3.40 16 16 C 0.13 2.92 5.55 -106.54 -0.59 2.33 16 17 C -0.44 -9.97 7.09 -37.96 -0.27 -10.24 16 18 H 0.09 1.95 6.69 -52.48 -0.35 1.60 16 19 C 0.08 1.65 5.16 -17.32 -0.09 1.56 16 20 N -0.78 -17.51 10.99 55.55 0.61 -16.90 16 21 Si 0.91 16.64 29.59 -169.99 -5.03 11.61 16 22 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 23 H -0.28 -4.94 7.11 56.52 0.40 -4.54 16 24 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 25 C -0.10 -1.88 7.97 -39.58 -0.32 -2.19 16 26 C -0.08 -1.31 9.67 -39.59 -0.38 -1.70 16 27 O -0.22 -3.29 10.65 3.99 0.04 -3.25 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.13 1.91 7.85 -52.48 -0.41 1.49 16 32 H 0.13 2.00 8.03 -52.49 -0.42 1.58 16 33 H 0.11 2.00 8.04 -52.48 -0.42 1.58 16 34 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 35 H 0.13 2.99 6.25 -52.49 -0.33 2.66 16 36 H 0.29 5.91 8.30 -40.82 -0.34 5.57 16 37 H 0.14 2.66 7.32 -52.49 -0.38 2.27 16 38 H 0.12 1.75 7.92 -52.49 -0.42 1.34 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -26.38 339.95 -7.34 -33.72 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -3.56 Total: 6.58 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -5.35 Total: -24.42 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 1.39 Total: -25.72 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: 0.04 Total: -3.25 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.04 Total: -3.64 kcal Atomic # 14 Polarization: 16.64 SS G_CDS: -5.03 Total: 11.61 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.38 -7.34 -33.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239019124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.424 kcal (2) G-P(sol) polarization free energy of solvation -26.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds